https://github.com/lczech/grenepilot-paper
Scripts and analyses for the GrENE-net pilot dataset
Science Score: 36.0%
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Repository
Scripts and analyses for the GrENE-net pilot dataset
Basic Info
- Host: GitHub
- Owner: lczech
- License: gpl-3.0
- Language: R
- Default Branch: master
- Homepage: http://grene-net.org/
- Size: 159 MB
Statistics
- Stars: 0
- Watchers: 4
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
grenepilot-paper
This repository contains the scripts and analyses for the GrENE-net pilot study
Monitoring rapid evolution of plant populations at scale with Pool-Sequencing. Lucas Czech, Yunru Peng, Jeffrey P. Spence, Patricia L.M. Lang, Tatiana Bellagio, Julia Hildebrandt, Katrin Fritschi, Rebecca Schwab, Beth A. Rowan, GrENE-net consortium, Detlef Weigel, J.F. Scheepens, Franois Vasseur, Moises Exposito-Alonso. bioRxiv, 2022.02.02.477408; doi:10.1101/2022.02.02.477408
This manuscript has also been submitted to eLife. We apologize that due to time constraints, we were not yet able to fully bring this repository up to our standards for reproducible science. If you have any problems or questions, please reach out to us by opening an issue.
Furthermore, see lczech/pool-seq-pop-gen-stats for our equations document, containing the pool-sequencing corrections for population genetic statistics, and see grenedalf for our implementation of these equations.
Owner
- Name: Lucas Czech
- Login: lczech
- Kind: user
- Location: Stanford, USA
- Company: Carnegie Institution for Science
- Website: http://lucas-czech.de
- Twitter: LucCzech
- Repositories: 29
- Profile: https://github.com/lczech
Postdoc in bioinformatics :seedling: and computer scientist :octocat: working on inter-disciplinary ways to save the planet :earth_africa:
GitHub Events
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Committers
Last synced: 9 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Lucas Czech | l****h@m****u | 41 |
| Lucas Czech | l****h@c****u | 16 |
| Moi | M****o | 5 |
| Jeffrey Spence | j****e@s****u | 1 |
Committer Domains (Top 20 + Academic)
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