single-cell-training
SIB course on single cell transcriptomics by mostly using the Seurat pipeline
Science Score: 59.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 3 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
✓Committers with academic emails
1 of 16 committers (6.3%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (8.6%) to scientific vocabulary
Keywords
bioinformatics
course
rna-seq
single-cell
teaching
tutorial
Last synced: 6 months ago
·
JSON representation
Repository
SIB course on single cell transcriptomics by mostly using the Seurat pipeline
Basic Info
- Host: GitHub
- Owner: sib-swiss
- License: cc-by-4.0
- Language: R
- Default Branch: master
- Homepage: https://sib-swiss.github.io/single-cell-training/
- Size: 278 MB
Statistics
- Stars: 84
- Watchers: 6
- Forks: 40
- Open Issues: 2
- Releases: 18
Topics
bioinformatics
course
rna-seq
single-cell
teaching
tutorial
Created over 4 years ago
· Last pushed 7 months ago
Metadata Files
Readme
Contributing
License
Zenodo
README.md
This website is hosted at: https://sib-swiss.github.io/single-cell-training/
Please refer to issues for improvements/bugs for course material or the website.
Any contribution to this course material is highly appreciated :+1:. Please have a look at the CONTRIBUTING.md file to learn more on how to contribute.
Course website single cell transcriptomics
Authors
How reuse this material
This website is generated with quarto. To re-build the website, download and install Rstudio and Quarto CLI. Also make sure you have installed the required packages. After that, clone this repository:
sh
git clone https://github.com/sib-swiss/single-cell-training.git
Open the project in Rstudio, and run in the terminal:
R
quarto preview
Owner
- Name: SIB Swiss Institute of Bioinformatics
- Login: sib-swiss
- Kind: organization
- Location: Switzerland
- Website: https://www.sib.swiss
- Repositories: 102
- Profile: https://github.com/sib-swiss
GitHub Events
Total
- Create event: 2
- Issues event: 1
- Release event: 2
- Watch event: 7
- Member event: 1
- Push event: 20
- Pull request event: 4
- Fork event: 6
Last Year
- Create event: 2
- Issues event: 1
- Release event: 2
- Watch event: 7
- Member event: 1
- Push event: 20
- Pull request event: 4
- Fork event: 6
Committers
Last synced: 9 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Geert van Geest | g****t@b****h | 236 |
| Geert van Geest | g****t@s****s | 69 |
| TaniaW | 3****s | 27 |
| jeitziner | r****r@e****h | 5 |
| jeitziner | 3****r | 1 |
| geertvangeest | r****r@f****t | 1 |
| geertvangeest | r****r@f****t | 1 |
| geertvangeest | r****r@f****t | 1 |
| geertvangeest | r****r@f****t | 1 |
| geertvangeest | r****r@f****t | 1 |
| geertvangeest | r****r@f****t | 1 |
| geertvangeest | r****r@f****t | 1 |
| geertvangeest | r****r@f****t | 1 |
| geertvangeest | r****r@f****t | 1 |
| geertvangeest | r****r@f****t | 1 |
| geertvangeest | r****r@f****t | 1 |
Committer Domains (Top 20 + Academic)
fv-az646-379.bnyr55kgab5uhfdhcgffazkscg.bx.internal.cloudapp.net: 1
fv-az457-930.3faczmgjfduuxnksfsdf43hgfa.dx.internal.cloudapp.net: 1
fv-az42-349.3csc2ma1nphezdks0klgwm0etd.gx.internal.cloudapp.net: 1
fv-az400-930.4sktce1ui1juvaou3g2cooit5e.bx.internal.cloudapp.net: 1
fv-az296-18.ie1vkwtfhimuhe55j3he1m2lab.gx.internal.cloudapp.net: 1
fv-az28-403.ycjfjujedjyu5lezsnvlijijec.cx.internal.cloudapp.net: 1
fv-az278-912.nowaiimkoolevpdf3f3lgehyfh.jx.internal.cloudapp.net: 1
fv-az249-465.ubt5suc3ufjutoeqyo4zsso0he.gx.internal.cloudapp.net: 1
fv-az241-670.2tfxs3cvuluejhi1wdm4o5ef4c.bx.internal.cloudapp.net: 1
fv-az208-691.kmgg0fu2myoezeajip4j0sfi3d.cx.internal.cloudapp.net: 1
fv-az127-887.h3uyzbqov44edfyrgkjongjtha.bx.internal.cloudapp.net: 1
epfl.ch: 1
sib.swiss: 1
bioinformatics.unibe.ch: 1
Issues and Pull Requests
Last synced: 9 months ago
All Time
- Total issues: 78
- Total pull requests: 59
- Average time to close issues: 2 months
- Average time to close pull requests: about 3 hours
- Total issue authors: 5
- Total pull request authors: 3
- Average comments per issue: 0.91
- Average comments per pull request: 0.03
- Merged pull requests: 56
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 4
- Pull requests: 5
- Average time to close issues: about 1 hour
- Average time to close pull requests: 12 minutes
- Issue authors: 2
- Pull request authors: 2
- Average comments per issue: 2.0
- Average comments per pull request: 0.0
- Merged pull requests: 4
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- GeertvanGeest (29)
- taniawyss (8)
- jeitziner (2)
- shameem356 (1)
- vmkalbskopf (1)
Pull Request Authors
- taniawyss (25)
- GeertvanGeest (8)
- dktanwar (3)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
.github/workflows/docker-image-manual.yml
actions
- actions/checkout v3 composite
- docker/build-push-action v3 composite
- docker/login-action v2 composite
- docker/metadata-action v4 composite
.github/workflows/docker-image.yml
actions
- actions/checkout v2 composite
- docker/build-push-action v2 composite
- docker/login-action v1 composite
- docker/metadata-action v3 composite
- docker/setup-buildx-action v1 composite
- docker/setup-qemu-action v1 composite
Docker/Dockerfile
docker
- rocker/rstudio 4.1.2 build
.github/workflows/render-page.yml
actions
- actions/checkout v4 composite
- actions/configure-pages v4 composite
- actions/upload-pages-artifact v3 composite
- peaceiris/actions-gh-pages v3 composite