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training-resources

Resources for teaching/preparing to teach bioimage analysis

https://github.com/neubias/training-resources

Science Score: 49.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (11.1%) to scientific vocabulary
Last synced: 6 months ago · JSON representation

Repository

Resources for teaching/preparing to teach bioimage analysis

Basic Info
Statistics
  • Stars: 58
  • Watchers: 11
  • Forks: 26
  • Open Issues: 297
  • Releases: 7
Created almost 6 years ago · Last pushed 6 months ago
Metadata Files
Readme Contributing License Code of conduct Citation Authors

README.md

Bioimage Analysis Training Resources

Gitpod ready-to-code

DOI

Module overview

Home page

This project is intended to collect together various resources that can be useful when planning/delivering training in image analysis.

About

Teach

The material in this repository can be flexibly used in many ways.

Some guidance and tips can be found in TEACHING_TIPS

Contribute

Detailed guidance for contributing can be found in CONTRIBUTING.md.

Repository

Current repository structure:

  • template things:
    • _includes/: among other things, contains folders holding activities and exercises specific to different platforms for image analysis, for each module
    • _layouts/, _sass/, Gemfile, _config.yml, Makefile, assets, .gitignore: material for building the webpages associated with this repository
  • content things:
    • _modules/: all of the individual module pages are collected here
    • _extras/: additional pages to complement the modules
    • figures/: a collection of illustrations/diagrams used to help explain the concepts in each module.
    • image_data/: image files used in activities and exercises
    • module_templates/: template file(s) as an example for module pages
    • src/: code for image analysis
    • workshops/: information on workshops taught using this material
    • example_images.md: intended to contain links to images that would make good examples when teaching
    • index.md: content for the website landing page
  • other pages (from Carpentries lesson template):
    • aio.md: an 'all-in-one' version of the material, combining all the modules into a single page
    • reference.md: currently blank but could be populated with a glossary/other reference material
    • setup.md: a page for setup instructions - currently blank but could be populated with instructions for relevant technical setup/installation

Owner

  • Name: NEUBIAS
  • Login: NEUBIAS
  • Kind: organization

GitHub Events

Total
  • Create event: 20
  • Release event: 7
  • Issues event: 56
  • Watch event: 9
  • Delete event: 38
  • Member event: 1
  • Issue comment event: 93
  • Push event: 213
  • Pull request event: 34
  • Fork event: 5
Last Year
  • Create event: 20
  • Release event: 7
  • Issues event: 56
  • Watch event: 9
  • Delete event: 38
  • Member event: 1
  • Issue comment event: 93
  • Push event: 213
  • Pull request event: 34
  • Fork event: 5

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 34
  • Total pull requests: 18
  • Average time to close issues: about 1 month
  • Average time to close pull requests: 5 months
  • Total issue authors: 7
  • Total pull request authors: 7
  • Average comments per issue: 1.59
  • Average comments per pull request: 0.94
  • Merged pull requests: 12
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 34
  • Pull requests: 12
  • Average time to close issues: about 1 month
  • Average time to close pull requests: 1 day
  • Issue authors: 7
  • Pull request authors: 5
  • Average comments per issue: 1.59
  • Average comments per pull request: 0.83
  • Merged pull requests: 7
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • tischi (83)
  • manerotoni (10)
  • k-dominik (5)
  • maulakhan (5)
  • ehudsivan (3)
  • galicae (1)
  • ssgpers (1)
  • felixS27 (1)
  • jhennies (1)
  • bevilacqc (1)
  • oanegros (1)
Pull Request Authors
  • manerotoni (10)
  • k-dominik (8)
  • bugraoezdemir (6)
  • tischi (6)
  • maulakhan (4)
  • felixS27 (3)
  • Charlotte1001 (2)
  • jhennies (2)
  • sunyi000 (2)
  • jluethi (1)
  • AnniekStok (1)
  • oanegros (1)
  • philipp-seidel1 (1)
Top Labels
Issue Labels
enhancement (36) new module (9) discussion (9) critical (7) bug (4) example data (2) new activity (2) data management (2) temporary fix (1) python (1) new implementation (1)
Pull Request Labels
enhancement (2) critical (1) discussion (1)

Dependencies

Gemfile rubygems
  • github-pages >= 0 development
  • webrick ~> 1.7
.github/workflows/template.yml actions
  • actions/cache v1 composite
  • actions/checkout master composite
  • actions/setup-python v2 composite
  • actions/setup-ruby v1 composite
  • r-lib/actions/setup-r master composite
.github/workflows/website.yml actions
  • actions/checkout master composite
  • actions/setup-python v2 composite
  • ruby/setup-ruby v1 composite