birdhouse-finch - v0.13.2

• Allow calculations of 30-year averages on ensemble processes
• Synchronized dependencies for xclim and xscen, placed pins on numcodecs to prevent issues with zarr and dask.

- Python
Published by Zeitsperre 9 months ago

birdhouse-finch - v0.13.1

• Allowed for the use of four (4) emissions scenarios in the ensemble_percentiles process.

- Python
Published by Zeitsperre about 1 year ago

birdhouse-finch - v0.13.0

• Added support for Birdhouse Helper Bot (for bumping versions).
• CI Actions and Python dependencies are now pinned to commit hashes.
• Permissions have been set and restricted as needed for all workflows.
• Pinned cf-xarray below v0.9.3.
• Reformatted and renamed CHANGES.rst to CHANGELOG.rst.
• Dropped support for Python 3.8 and 3.9. The supported versions are now Python 3.10, 3.11 and 3.12.
• black has been updated to v2024.10.0, and coding conventions have been updated to Python3.10+.
• Several dependencies now are pinned to baseline versions, including anyascii, dask, ipython, matplotlib, nbsphinx numpy, and sphinxcontrib-bibtex.
• Added xscen dependency. Now used in spatial averaging of ensemble processes.
• Updated the build system to use flit v3.9.0 (PEP 517 and PEP 621). Several configuration files have been migrated to pyproject.toml and .flake8.
• finch now uses a src-based layout for the package. The finch package is now located in the src directory.
• The pre-commit configuration has been updated to use pre-commit v3.5.0. Several hooks have been added, including pygrep-hooks (security fixes), ruff (code formatting), and vulture (dead code).
• Documentation examples now build without warnings. ReadTheDocs is now configured to fail_on_warning.
• xclim has been updated to v0.52.2.
• Modernized the documentation to reflect recent changes.
• Added pylint to the linting checks and pre-commit steps.
• Added deployment workflows for PyPI and TestPyPI.
• Synchronized more dependencies.

- Python
Published by Zeitsperre about 1 year ago

birdhouse-finch - v0.12.1

• Replaced unidecode with anyascii due to a licensing issue.
• Synchronized some dependencies across build systems.
• Added a workaround in wps_geoseries_to_netcdf to handle a pandas v2.0 behaviour change.

- Python
Published by Zeitsperre over 1 year ago

birdhouse-finch - v0.12.0

• Renamed the installed package from finch to birdhouse-finch.
• First release of the birdhouse-finch package on PyPI.
• Versioning now adheres to SemVer v2.0.0.
• Added a Makefile recipe to the repository to evaluate notebooks while ignoring the output cells.
• Cleaned up documentation to facilitate easier navigation.
• Slightly reorganized the documentation for easier navigation.
• Fast-forwarded the cookiecutter.
• Fixed the Manifest.in to add all necessary files to wheel.
• Removed references to files that have never existed (apidoc).
• Cleaned up the setup code.
• Added more files to be ignored in the .gitignore and in the Manifest.in.

- Python
Published by Zeitsperre almost 2 years ago

birdhouse-finch - v0.11.4

• Fixed a bug that occurred when fixing a broken cftime-index with newer cftime versions.
• Placed pins on xarray and pandas to prevent future errors from changes to frequency codes.

- Python
Published by Zeitsperre about 2 years ago

birdhouse-finch - v0.11.3

• Updated ReadTheDocs to use the new mambaforge version (2022.9).
• Addressed calls in GitHub Action usage that were emitting warnings.
• Updated MANIFEST.in to include and exclude the relevant files for the source distribution.
• Modified the setup.py to only include the files necessary in the wheel.
• Updated AUTHORS.rst to list more contributors.
• Removed namespace file (__init__.py) from tests to ensure that they aren't treated like an importable package.
• Updated pre-commit hooks.
• Sorted software requirements for legibility.
• Removed Travis-CI shell script.

- Python
Published by Zeitsperre over 2 years ago

birdhouse-finch - v0.11.2

• Added a Docker-based testing suite to the GitHub Workflows.
• Added a wider range of Python versions to test against in the GitHub Workflows.
• Migrated conda-build action from mamba-org/provision-with-micromamba to mamba-org/setup-micromamba.
• Cleaned up the Dockerfile. Docker now pip-installs finch directly from the GitHub repository.
• Finch now explicitly supports Python3.11.
• Pinned Python below 3.12 on conda and removed pin on pint for ReadTheDocs builds.
• Added a GitHub Workflow to bump the version number and to create tags from the version bumping process on dispatch.
• Added a pre-commit hook for validating the ReadTheDocs configuration and GitHub Workflows.

- Python
Published by Zeitsperre over 2 years ago

birdhouse-finch - v0.11.1

• Update to xclim 0.43.0.
• Added xclim yml module support
  • Added humidex days above calculation via yml module
  • Reimplmented streamflow indicators via yml module (adjust for xclim 0.41 breaking changes)
• Fixed bug for CanDCS-U6 ensemble "26models" list
• Passing an empty string to ensemble_percentiles in ensemble processes will return the merged un-reduced ensemble. The different members are listed along the realization coordinates through raw names allowing for basic distinction between the input members.

- Python
Published by tlogan2000 over 2 years ago

birdhouse-finch - v0.10.0

• Generalize ensemble datasets configuration.
  • Datasets usable by ensemble processes are now specified through a YAML file which is pointed to in the configuration.
  • As a consequence processes are generated according to the available variables. Similarly for the allowed values of some inputs on these processes.
  • The output name now includes the dataset name (if a custom name was not specified).
  • finch.processes.xclim was removed, there is no static module of processes.
  • Input "rcp" has been renamed to "scenario".
  • Input "dataset_name" has been fixed and renamed to "dataset".
• Update to xclim 0.38.0.
• Improved subsetgridpointdataset & subsetbbox_dataset performance when using local files.

- Python
Published by aulemahal over 3 years ago

birdhouse-finch - v0.9.1

Bug fix release.

• Avoid using a broken version of libarchive in the Docker image.

- Python
Published by aulemahal over 3 years ago

birdhouse-finch - v0.9.0

• Fix use of output_name, add output_format to xclim indicators.
• Change all outputs to use output as the main output field name (instead of output_netcdf).

• Updated to xclim 0.37:

  • Percentile inputs of xclim indicators have been renamed with generic names, excluding an explicit mention to the target percentile.
  • In ensemble processes, these percentiles can now be chosen through perc_[var] inputs. The default values are inherited from earlier versions of xclim.

• Average shape process downgraded to be single-threaded, as ESMF seems to have issues with multithreading.

• Removed deprecated processes subset_ensemble_bbox_BCCAQv2, subset_ensemble_BCCAQv2 and BCCAQv2_heat_wave_frequency_gridpoint.

• Added csv_precision to all processes allowing CSV output. When given, it controls the number of decimal places in the output.

- Python
Published by aulemahal over 3 years ago

birdhouse-finch - v0.8.2

This is a patch release to add awaited functionality and avoid some performance issues with the latest dask version.

• Add geoseries_to_netcdf process, converting a geojson (like a OGC-API request) to a CF-compliant netCDF.
• Add output_name argument to most processes (excepted subsetting and averaging processes), to control the name (or prefix) of the output file.
• New dependency python-slugify to ensure filenames are safe and valid.
• Pinning dask to <=2022.1.0 to avoid a performance issue with 2022.1.1.

- Python
Published by aulemahal about 4 years ago

birdhouse-finch - v0.8.0

What's Changed

• Updated changelog by @matprov in https://github.com/bird-house/finch/pull/214
• Add hourlytodaily process by @huard in https://github.com/bird-house/finch/pull/215
• Avoid annoying warnings by updating birdy (environment-docs) by @huard in https://github.com/bird-house/finch/pull/216
• Upgrade to clisops 0.8.0 to accelerate spatial averages over regions.
• Upgrade to xesmf 0.6.2 to fix spatial averaging bug not weighing correctly cells with varing areas.
• Update to PyWPS 4.5.1 to allow the creation of recursive directories for outputs.

Full Changelog: https://github.com/bird-house/finch/compare/v0.7.7...v0.8.0

- Python
Published by huard about 4 years ago

birdhouse-finch - v0.7.7

What's Changed

• Revert "added SENTRY_ENV environment variable" by @matprov in https://github.com/bird-house/finch/pull/213

Full Changelog: https://github.com/bird-house/finch/compare/v0.7.6...v0.7.7

- Python
Published by huard over 4 years ago

birdhouse-finch - v0.7.6

• Update to xclim 0.31
• Added SENTRY_ENV configuration
• Possibility to pass multiple "rcp" inputs for ensemble processes.
• Writing to netcdf is done only after calling load() to avoid locks occurring within dask calls to to_netcdf in multi-processing mode.
• Add an average parameter to ensemble processes. When true, a spatial average is returned.

What's Changed

• Refresh notebooks by @Zeitsperre in https://github.com/bird-house/finch/pull/201
• Add SENTRY_ENV param by @matprov in https://github.com/bird-house/finch/pull/203
• Multiple rcps for ensemble processes by @aulemahal in https://github.com/bird-house/finch/pull/202
• Remove bugging drop after geoserver upgrade by @aulemahal in https://github.com/bird-house/finch/pull/207
• Update to xclim 0.31 by @aulemahal in https://github.com/bird-house/finch/pull/209
• Fix xarray, dask and gunicorn related hang by @cjauvin in https://github.com/bird-house/finch/pull/204
• run load() before switching to single-threaded scheduler by @huard in https://github.com/bird-house/finch/pull/211
• Add average flag for ensemble processes by @aulemahal in https://github.com/bird-house/finch/pull/210

New Contributors

• @cjauvin made their first contribution in https://github.com/bird-house/finch/pull/204

Full Changelog: https://github.com/bird-house/finch/compare/v0.7.5...v0.7.6

- Python
Published by huard over 4 years ago

birdhouse-finch - v0.7.5

• Update to xclim 0.27
• Added empirical_quantile_mapping process calling xclim.sdba.EmpiricalQuantileMapping.
• Update to PyWPS 4.4.5, fixing the xml vulnerability.

- Python
Published by huard over 4 years ago

birdhouse-finch - v0.7.4

• Update to xclim 0.26.
• Default metadata attributes are given through configuration, instead of being hardcoded.
• Inclusion of a list of input dataset urls in ensemble processes.
• Correct ensemble statistics on day-of-year indicators.

- Python
Published by aulemahal almost 5 years ago

birdhouse-finch - v0.7.3

• Workaround for clisops shutting down logging
• More flexible chunking
• New subsetting & averaging notebook
• Require xESMF>=0.5.3

- Python
Published by huard almost 5 years ago

birdhouse-finch - v0.7.2

Changes: (Bug fix fix release)

• Add datavalidation and cfcompliance arguments for xclim ensemble processes.

- Python
Published by aulemahal almost 5 years ago

birdhouse-finch - v0.7.1

Changes: (Bug fix release)

• Add datavalidation and cfcompliance arguments for xclim processes.
• Skip data_validation checks for the BCCAQv2HeatWave process.

- Python
Published by aulemahal almost 5 years ago

birdhouse-finch - v0.7.0

Changes: * Add new process averaging gridded fields over a polygon using xESMF * Update to xclim 0.24, allowing for considerable simplification of the indicator process building mechanism * Update to PyWPS 4.4

- Python
Published by huard almost 5 years ago

birdhouse-finch - v0.6.1

Changes

• Add partial support for xclim 0.23 with new indicators
• Add support for land indicators
• Add support for multivariate indicators
• Upgrade PyWPS to 4.2.10
• Fix bug in variable name inference
• Add support for non-standard variable name (univariate case only)

- Python
Published by huard about 5 years ago

birdhouse-finch - v0.6.0

• Fix to chunk regions of subsetted files
• Use cruft to propagate changes from the birdhouse cookiecutter
• Catch documentation build error earlier since doc build is part of regular CI build
• Catch tutorial notebooks out of sync with code earlier since also part of regular CI build
• Use mock imports to facilitate building docs
• Add partial support for xclim v0.21
• Add support for shapefiles in subset_shape

- Python
Published by huard about 5 years ago

birdhouse-finch - v0.5.2 - Oxford

• Add support for process translations
• Add process for subset-shape
• Replace spaces in DRS filenames
• Run notebook tests from Makefile
• Refresh notebooks from Makefile
• Update to xclim 0.15.2
• Implement mid_date and before_date inputs
• Remove realization from csv output

- Python
Published by huard almost 6 years ago

birdhouse-finch -

Fixes

• drs_filename function fixes for unknown project and underscores in filename
• patch frequency attribute of computed indices

- Python
Published by davidcaron almost 6 years ago

birdhouse-finch - v0.4.0

• Add ensembles processes
• Allow ensemble process to specify which models are included
• Accept multiple files for processing
• Update from latest cookie-cutter template
• Add grid point indicator processes
• Add ensemble bbox processes
• Add support for percentiles inputs
• Update xclim to 0.14
• Pin PyWPS to 4.2.4
• Add DODS to supported formats for resources

- Python
Published by huard almost 6 years ago

birdhouse-finch - Bucharest

What's new: - Updated notebook examples - Added subsetting test - Updated dependencies to xclim

- Python
Published by huard over 6 years ago

birdhouse-finch -

- Python
Published by davidcaron over 6 years ago

birdhouse-finch - Version 0.2

Add support for grid point and bbox subsetting. This is a soft release, based on master branches or pywps, xarray and xclim.

- Python
Published by huard almost 7 years ago