sxs

Python code for manipulating data from the SXS collaboration

https://github.com/sxs-collaboration/sxs

Science Score: 64.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
    Found CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
  • Academic publication links
    Links to: arxiv.org
  • Committers with academic emails
    2 of 10 committers (20.0%) from academic institutions
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (18.3%) to scientific vocabulary

Keywords

python

Keywords from Contributors

astronomy gravitational-waves spacy-extension network-simulation hacking optim interactive projection generic sequences
Last synced: 6 months ago · JSON representation ·

Repository

Python code for manipulating data from the SXS collaboration

Basic Info
Statistics
  • Stars: 31
  • Watchers: 1
  • Forks: 22
  • Open Issues: 20
  • Releases: 117
Topics
python
Created over 8 years ago · Last pushed 6 months ago
Metadata Files
Readme License Citation

README.md

Test Status Documentation Status PyPI Version Conda Version MIT License Open with marimo

Simulating eXtreme Spacetimes package

[!NOTE] As described in our latest paper, our waveforms now include memory effects. Specifically, when using any simulation with version 3 or greater, you should expect to see memory effects, most visible in the $(\ell, 0)$ modes, and generally resulting in ringdowns that do not approach 0 at late times.

The sxs python package provides a high-level interface for using data produced by the SXS collaboration. In particular, the function sxs.load can automatically find, download, and load data, returning objects that provide common interfaces to the various types of data, without forcing the user to worry about details like data formats or where to find the data. It can also automatically select the newest or highest-resolution dataset for a given simulation, or return a range of versions or resolutions. Currently, the high-level objects encapsulate

  • Dataframe a catalog of all simulations produced by the SXS collaboration
  • Simulation an object encapsulating all data for a single simulation
  • Metadata data describing the simulation parameters
  • Horizons time-series data describing the apparent horizons
  • Waveform time-series data describing the extrapolated gravitational-wave modes

Installation

Because this package is pure python code, installation is very simple. In particular, with a reasonably modern installation, you can just run a command like

bash python -m pip install sxs

or

bash mamba install -c conda-forge sxs

Here, the first command assumes that you have an appropriate python environment set up in some other way; mamba is the newer replacement for conda, and is a convenient way to install python and manage environments. Either of these commands will download and install the sxs package and its most vital requirements.

You may also want to set some convenient defaults to automatically download and cache data:

bash python -c "import sxs; sxs.write_config(download=True, cache=True)"

This will write a configuration file in the directory returned by sxs.sxs_directory("config"), and downloaded data will be cached in the directory returned by sxs.sxs_directory("cache"). See that function's documentation for details.

Citing this package and/or data

If you use this package and/or the data it provides in your research, please cite them, including the specific version of the data that you use (see below). To help with this, we provide the function sxs.cite. Use print(sxs.cite()) to see BibTeX citations for the version of this package you are using, the most recent paper describing the catalog, and the catalog data itself. Use, e.g., print(sxs.cite("SXS:BBH:0001", "SXS:BBH:4001")) to include citations for those specific simulations and the papers that introduced them.

Usage

An extensive demonstration of this package's capabilities is available here, in the form of interactive jupyter notebooks that are actually running this code and some pre-downloaded data. The following is just a very brief overview of the sxs package's main components.

Loading a specific version of the catalog

For the purposes of reproducibility both reproducing your own results and allowing others to reproduce them it is important to be aware of which version of the catalog you are using, and to cite it when you publish results using SXS data. Whenever sxs tries to load data, it most first load some version of the catalog. If you do not specify a version, it will automatically find and load the most recent version available via github, and print out a message telling you which version it is using, like

python Loading SXS simulations using latest tag 'v3.0.0', published at 2025-05-12T10:00:00Z.

For the rest of that Python session, all data loaded will be from that version of the catalog. If you want to use a different version, you can specify it explicitly while loading the catalog preferably as

python sxs.load("dataframe", tag="3.0.0")

Even if you do not use the returned object from this command, it will ensure that all data will be loaded from the specified version of the catalog. Thus, it is best practice to make this call as soon as you import the sxs package.

Interacting with the data

There are four important objects to understand in this package:

```python import sxs

Load a specific version of the catalog for reproducibility

df = sxs.load("dataframe", tag="3.0.0")

Load a specific simulation

sim = sxs.load("SXS:BBH:4001")

Obtain data about the horizons

horizons = sim.horizons

Obtain data about the gravitational-wave strain

h = sim.h ```

Note that tag is optional, but is good to include because it sets the version of the catalog from which data is loaded, which ensures reproducibility. Leave it out to see the most recent version available, and then use that version consistently in any analysis. Be sure to cite the specific version of the catalog you used in any publications.

The "dataframe" df contains information about every simulation in the catalog, including all available data files, and information about how to get them. You probably don't need to actually know about details like where to get the data, but df can help you find the simulations you care about. It is a pandas.DataFrame object, where the rows are names of simulations (like "SXS:BBH:0123") and the columns include the metadata for the simulations things like mass ratio, spins, eccentricity, etc. in addition to extra refinements like spin magnitudes, etc.

Once you have found a simulation you want to work with, you can load it with, e.g., sxs.load("SXS:BBH:4001"), which will return a Simulation object, which contains metadata about the simulation, and allows you to load data from the simulation. By default, it uses the highest-resolution run of the simulation, though this lower resolutions can be specified.

The actual data itself is primarily contained in the next two objects. The horizons object has three attributes horizons.A, horizons.B, and horizons.C typically representing the original two horizons of the black-hole binary and the common horizon that forms at merger. In matter simulations, one or more of these may be None. Otherwise, each of these three is a HorizonQuantities object, containing several timeseries relating to mass, spin, and position.

Finally, the h waveform encapsulates the modes of the strain waveform and the corresponding time information, along with relevant metadata like data type, spin weight, etc., with useful features like numpy-array-style slicing.

There is also psi4 data available, which is computed with entirely different methods; h and psi4 are not just computed one from the other by a double integral or differentiation. As a result, we generally recommend using h instead of psi4 unless you have very specific requirements.

Contributing

Contributions are welcome! There are at least two ways to contribute to this codebase:

  1. If you find a bug or want to suggest an enhancement, use the issue tracker on GitHub. It's a good idea to look through past issues, too, to see if anybody has run into the same problem or made the same suggestion before.
  2. If you will write or edit the python code, we use the fork and pull request model.

You are also allowed to make use of this code for other purposes, as detailed in the MIT license. For any type of contribution, please follow the code of conduct.

Reporting catalog data issues

If you find an issue with our data or metadata, please let us know! Fill out an issue with the catalog data template and we will take a look as soon as possible.

Owner

  • Name: Simulating eXtreme Spacetimes
  • Login: sxs-collaboration
  • Kind: organization

Citation (CITATION.cff)

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
  - family-names: Boyle
    given-names: Michael
    orcid: https://orcid.org/0000-0002-5075-5116
  - family-names: "Mitman"
    given-names: "Keefe"
    orcid: "https://orcid.org/0000-0003-0276-3856"
  - family-names: "Scheel"
    given-names: "Mark"
    orcid: "https://orcid.org/0000-0001-6656-9134"
  - family-names: "Stein"
    given-names: "Leo"
    orcid: "https://orcid.org/0000-0001-7559-9597"
title: "The sxs package"
license: MIT
doi: 10.5281/zenodo.4034006
version: 2025.0.18
date-released: 2025-07-21

GitHub Events

Total
  • Create event: 62
  • Release event: 38
  • Issues event: 38
  • Watch event: 5
  • Delete event: 8
  • Issue comment event: 82
  • Push event: 128
  • Pull request review comment event: 31
  • Pull request review event: 21
  • Pull request event: 51
  • Fork event: 3
Last Year
  • Create event: 62
  • Release event: 38
  • Issues event: 38
  • Watch event: 5
  • Delete event: 8
  • Issue comment event: 82
  • Push event: 128
  • Pull request review comment event: 31
  • Pull request review event: 21
  • Pull request event: 51
  • Fork event: 3

Committers

Last synced: 9 months ago

All Time
  • Total Commits: 784
  • Total Committers: 10
  • Avg Commits per committer: 78.4
  • Development Distribution Score (DDS): 0.222
Past Year
  • Commits: 366
  • Committers: 8
  • Avg Commits per committer: 45.75
  • Development Distribution Score (DDS): 0.317
Top Committers
Name Email Commits
Mike Boyle m****e@g****m 610
github-actions g****s@g****m 114
Keefe Mitman k****n@c****u 40
Leo C. Stein l****n@g****m 7
dependabot[bot] 4****] 4
Mark Scheel s****l@t****u 4
Samson Leong 5****1 2
Yitian Chen 5****b 1
Prayush Kumar p****r@g****m 1
Nils Vu o****s@n****e 1
Committer Domains (Top 20 + Academic)

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 70
  • Total pull requests: 113
  • Average time to close issues: 4 months
  • Average time to close pull requests: 22 days
  • Total issue authors: 19
  • Total pull request authors: 10
  • Average comments per issue: 1.41
  • Average comments per pull request: 1.16
  • Merged pull requests: 95
  • Bot issues: 0
  • Bot pull requests: 5
Past Year
  • Issues: 27
  • Pull requests: 53
  • Average time to close issues: 27 days
  • Average time to close pull requests: 4 days
  • Issue authors: 11
  • Pull request authors: 6
  • Average comments per issue: 1.41
  • Average comments per pull request: 1.42
  • Merged pull requests: 44
  • Bot issues: 0
  • Bot pull requests: 1
Top Authors
Issue Authors
  • moble (32)
  • duetosymmetry (10)
  • keefemitman (6)
  • akhairna (4)
  • nilsvu (3)
  • Kanchan-05 (1)
  • vijayvarma392 (1)
  • nilsdeppe (1)
  • SSL32081 (1)
  • Sunnnsh (1)
  • AnujKankani (1)
  • mhycheung (1)
  • haraldp271 (1)
  • GitHimanshuc (1)
  • hrueter (1)
Pull Request Authors
  • moble (67)
  • keefemitman (17)
  • duetosymmetry (15)
  • markscheel (6)
  • dependabot[bot] (6)
  • dongzesun (5)
  • SSL32081 (4)
  • EthansGitHub (2)
  • nilsvu (2)
  • prayush (1)
Top Labels
Issue Labels
enhancement (4) bug (3) catalog-data (1)
Pull Request Labels
dependencies (6)

Packages

  • Total packages: 3
  • Total downloads:
    • pypi 5,469 last-month
  • Total dependent packages: 6
    (may contain duplicates)
  • Total dependent repositories: 6
    (may contain duplicates)
  • Total versions: 347
  • Total maintainers: 1
pypi.org: sxs

Interface to data produced by the Simulating eXtreme Spacetimes collaboration

  • Homepage: https://github.com/sxs-collaboration/sxs
  • Documentation: https://sxs.readthedocs.io/
  • License: The MIT License (MIT) Copyright (c) 2020 Michael Boyle Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
  • Latest release: 2025.0.18
    published 7 months ago
  • Versions: 295
  • Dependent Packages: 4
  • Dependent Repositories: 4
  • Downloads: 5,469 Last month
  • Docker Downloads: 0
Rankings
Dependent packages count: 1.9%
Docker downloads count: 4.3%
Downloads: 4.8%
Average: 6.9%
Dependent repos count: 7.5%
Forks count: 9.6%
Stargazers count: 13.3%
Maintainers (1)
Last synced: 6 months ago
conda-forge.org: sxs

This package provides a number of utilities for use by the SXS collaboration, and others who use our data. For example, the `metadata` subpackage provides functions for reading and analyzing the metadata files provided with SXS simulations for describing the physics they represent. Another important subpackage is `zenodo`, which provides handy functions for interacting with zenodo.org in general, and in particular our collection of simulation data on that site.

  • Versions: 33
  • Dependent Packages: 2
  • Dependent Repositories: 2
Rankings
Dependent packages count: 19.6%
Dependent repos count: 20.2%
Average: 33.4%
Forks count: 42.7%
Stargazers count: 51.2%
Last synced: 6 months ago
conda-forge.org: sxs-ecosystem

This package provides a number of utilities for use by the SXS collaboration, and others who use our data. For example, the `metadata` subpackage provides functions for reading and analyzing the metadata files provided with SXS simulations for describing the physics they represent. Another important subpackage is `zenodo`, which provides handy functions for interacting with zenodo.org in general, and in particular our collection of simulation data on that site.

  • Versions: 19
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent repos count: 34.0%
Forks count: 39.0%
Average: 42.9%
Stargazers count: 47.3%
Dependent packages count: 51.2%
Last synced: 6 months ago

Dependencies

pyproject.toml pypi
  • pytest ^7.0 develop
  • pytest-cov >=2.10.1 develop
  • black >=22.1
  • corner ^2.1.0
  • feedparser ^6.0.1
  • h5py ^3
  • inflection ^0.5.1
  • ipykernel ^5.3.4
  • ipywidgets ^7.5.1
  • jupyter_contrib_nbextensions ^0.5.1
  • jupyterlab ^2.2.8
  • line_profiler ^3.0.2
  • matplotlib >=2.1.1
  • memory_profiler ^0.57.0
  • mkapi 1.0.13
  • mkdocs >=1.1.2
  • numba >=0.55
  • numpy ^1.20
  • numpy-quaternion >=0.3.1
  • pandas ^1.1.2
  • pylatexenc ^2.7
  • pymdown-extensions ^8
  • pytest-forked ^1.3.0
  • python >=3.8,<3.11
  • pytz ^2020.1
  • qgrid ^1.3.1
  • quaternionic ^1.0
  • requests ^2.24.0
  • rise ^5.6.1
  • scipy ^1.0
  • scri >=2020.8.18
  • spherical ^1.0
  • spinsfast >=2022
  • sympy ^1.6.2
  • tqdm ^4.48.2, <4.61.2
  • urllib3 ^1.25.10
.github/workflows/build.yml actions
  • actions/checkout v2 composite
  • actions/create-release latest composite
  • actions/setup-python v2 composite
  • codecov/codecov-action v2 composite
.github/workflows/pr_rtd_link.yml actions
  • readthedocs/actions/preview v1 composite