Science Score: 59.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 12 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
✓Committers with academic emails
9 of 29 committers (31.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (15.8%) to scientific vocabulary
Keywords
Keywords from Contributors
Repository
Coordinate- and image-based meta-analysis in Python
Basic Info
- Host: GitHub
- Owner: neurostuff
- License: mit
- Language: Python
- Default Branch: main
- Homepage: https://nimare.readthedocs.io
- Size: 30.5 MB
Statistics
- Stars: 195
- Watchers: 6
- Forks: 59
- Open Issues: 96
- Releases: 66
Topics
Metadata Files
README.md
NiMARE: Neuroimaging Meta-Analysis Research Environment
A Python library for coordinate- and image-based meta-analysis.
Currently, NiMARE implements a range of image- and coordinate-based meta-analytic algorithms, as well as several methods for advanced meta-analytic methods, like automated annotation and functional decoding.
Installation
Please see our installation instructions for information on how to install NiMARE.
Installation with pip
pip install nimare
Local installation (development version)
pip install git+https://github.com/neurostuff/NiMARE.git
Citing NiMARE
If you use NiMARE in your research, we recommend citing the Zenodo DOI associated with the NiMARE version you used, as well as the Aperture Neuro journal article for the NiMARE Jupyter book. You can find the Zenodo DOI associated with each NiMARE release at https://zenodo.org/record/6642243#.YqiXNy-B1KM.
```BibTeX
This is the Aperture Neuro paper.
@article{Salo2023, doi = {10.52294/001c.87681}, url = {https://doi.org/10.52294/001c.87681}, year = {2023}, volume = {3}, pages = {1 - 32}, author = {Taylor Salo and Tal Yarkoni and Thomas E. Nichols and Jean-Baptiste Poline and Murat Bilgel and Katherine L. Bottenhorn and Dorota Jarecka and James D. Kent and Adam Kimbler and Dylan M. Nielson and Kendra M. Oudyk and Julio A. Peraza and Alexandre Pérez and Puck C. Reeders and Julio A. Yanes and Angela R. Laird}, title = {NiMARE: Neuroimaging Meta-Analysis Research Environment}, journal = {Aperture Neuro} }
This is the Zenodo citation for version 0.0.11.
@software{salotaylor2022_5826281, author = {Salo, Taylor and Yarkoni, Tal and Nichols, Thomas E. and Poline, Jean-Baptiste and Kent, James D. and Gorgolewski, Krzysztof J. and Glerean, Enrico and Bottenhorn, Katherine L. and Bilgel, Murat and Wright, Jessey and Reeders, Puck and Kimbler, Adam and Nielson, Dylan N. and Yanes, Julio A. and Pérez, Alexandre and Oudyk, Kendra M. and Jarecka, Dorota and Enge, Alexander and Peraza, Julio A. and Laird, Angela R.}, title = {neurostuff/NiMARE: 0.0.11}, month = jan, year = 2022, publisher = {Zenodo}, version = {0.0.11}, doi = {10.5281/zenodo.5826281}, url = {https://doi.org/10.5281/zenodo.5826281} } ```
To cite NiMARE in your manuscript, we recommend something like the following:
We used NiMARE v0.0.11 (RRID:SCR_017398; Salo et al., 2022a; Salo et al., 2022b).
Contributing
Please see our contributing guidelines for more information on contributing to NiMARE.
We ask that all contributions to NiMARE respect our code of conduct.
Owner
- Name: The NeuroStore Ecosystem
- Login: neurostuff
- Kind: organization
- Website: https://neurostuff.github.io
- Repositories: 11
- Profile: https://github.com/neurostuff
Tools for neuroimaging meta-analysis
GitHub Events
Total
- Create event: 17
- Release event: 16
- Issues event: 22
- Watch event: 19
- Delete event: 12
- Issue comment event: 47
- Push event: 23
- Pull request review comment event: 21
- Pull request review event: 22
- Pull request event: 37
Last Year
- Create event: 17
- Release event: 16
- Issues event: 22
- Watch event: 19
- Delete event: 12
- Issue comment event: 47
- Push event: 23
- Pull request review comment event: 21
- Pull request review event: 22
- Pull request event: 37
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Taylor Salo | t****6@f****u | 431 |
| James Kent | j****1@g****m | 110 |
| Tal Yarkoni | t****i@g****m | 101 |
| Julio A. Peraza | 5****a | 42 |
| Alejandro de la Vega | a****4@g****m | 34 |
| James Kent | j****t@u****u | 29 |
| JulioAPeraza | j****4@f****u | 27 |
| Chris Gorgolewski | k****i@g****m | 23 |
| 62442katieb | k****6@f****u | 22 |
| Dorota Jarecka | d****a@g****m | 15 |
| Shotgunosine | a****e@g****m | 6 |
| Taylor Salo | s****t@p****u | 4 |
| Yifan Yu | 4****0 | 4 |
| jdkent | j****t | 4 |
| Jessey Wright | j****5@s****u | 3 |
| Murat Bilgel | b****m@g****m | 2 |
| Zhen-Qi Liu | l****7@g****m | 2 |
| Enrico Glerean | e****n@a****i | 2 |
| tsalo | t****o | 2 |
| Alexander Enge | 6****e | 2 |
| Will Foran | w****n@g****m | 1 |
| Kendra Oudyk | 3****k | 1 |
| Puck Reeders | 3****r | 1 |
| Alexandre PEREZ | 3****z | 1 |
| Ghislain Vaillant | g****l | 1 |
| Ryan Hammonds | R****s@u****u | 1 |
| Adam Kimbler | a****r@f****u | 1 |
| Patrycja | 3****Z | 1 |
| Satrajit Ghosh | s****a@m****u | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 87
- Total pull requests: 160
- Average time to close issues: 4 months
- Average time to close pull requests: 24 days
- Total issue authors: 16
- Total pull request authors: 11
- Average comments per issue: 1.3
- Average comments per pull request: 2.58
- Merged pull requests: 134
- Bot issues: 0
- Bot pull requests: 1
Past Year
- Issues: 13
- Pull requests: 34
- Average time to close issues: 5 days
- Average time to close pull requests: 2 days
- Issue authors: 7
- Pull request authors: 3
- Average comments per issue: 0.54
- Average comments per pull request: 1.94
- Merged pull requests: 32
- Bot issues: 0
- Bot pull requests: 1
Top Authors
Issue Authors
- jdkent (25)
- tsalo (24)
- JulioAPeraza (10)
- adelavega (6)
- JohannesWiesner (4)
- yifan0330 (3)
- MaxKorbmacher (2)
- liuzhenqi77 (1)
- neurobot01 (1)
- dlevitas (1)
- Remi-Gau (1)
- tyarkoni (1)
- nicholst (1)
- araikes (1)
- poldrack (1)
Pull Request Authors
- jdkent (85)
- JulioAPeraza (65)
- tsalo (16)
- adelavega (11)
- yifan0330 (7)
- Remi-Gau (2)
- dependabot[bot] (2)
- liuzhenqi77 (2)
- WillForan (1)
- PTDZ (1)
- ghisvail (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- pypi 2,426 last-month
- Total dependent packages: 5
- Total dependent repositories: 11
- Total versions: 65
- Total maintainers: 4
pypi.org: nimare
NiMARE: Neuroimaging Meta-Analysis Research Environment
- Homepage: https://github.com/neurostuff/NiMARE
- Documentation: https://nimare.readthedocs.io/
- License: MIT
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Latest release: 0.5.5
published 7 months ago
Rankings
Maintainers (4)
Dependencies
- actions/checkout v2 composite
- actions/setup-python v2 composite
- mstachniuk/ci-skip master composite
- actions/checkout v2 composite
- actions/setup-python v2 composite
- actions/checkout v2 composite
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- actions/setup-python v2 composite
- actions/upload-artifact v2 composite
- codecov/codecov-action v2 composite
- mstachniuk/ci-skip master composite
- actions/checkout v2 composite
- stefanzweifel/changelog-updater-action v1 composite
- stefanzweifel/git-auto-commit-action v4 composite
- neurodebian stretch-non-free build