Science Score: 49.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 6 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
○Committers with academic emails
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (11.7%) to scientific vocabulary
Keywords
Repository
Python library for SBGN
Basic Info
- Host: GitHub
- Owner: matthiaskoenig
- License: mit
- Language: JavaScript
- Default Branch: develop
- Homepage: http://matthiaskoenig.github.io/libsbgnpy/
- Size: 15.1 MB
Statistics
- Stars: 9
- Watchers: 5
- Forks: 0
- Open Issues: 3
- Releases: 10
Topics
Metadata Files
README.md
libsbgnpy: Python library for SBGN
Python library to work with the Systems Biology Graphical Notation (SBGN). This library is based on the SBGN XML schema and supports reading, writing and validation of SBGN files.
The initial library was generated using xsdata. Additional utility functions for reading, writing, and rendering SBGN documents are provided.
Documentation with examples is available at https://matthiaskoenig.github.io/libsbgnpy/.
A presentation introducing libsbgnpy can be found here: HARMONY2025 libsbgnpy.
How to cite
Installation
libsbgnpy is available from pypi
bash
pip install libsbgnpy
License
- Source Code: MIT
- Documentation: CC BY-SA 4.0
Funding
Matthias König (MK) was supported by the Federal Ministry of Education and Research (BMBF, Germany) within the research network Systems Medicine of the Liver (LiSyM, grant number 031L0054). MK is supported by the Federal Ministry of Education and Research (BMBF, Germany) within ATLAS by grant number 031L0304B and by the German Research Foundation (DFG) within the Research Unit Program FOR 5151 QuaLiPerF (Quantifying Liver Perfusion-Function Relationship in Complex Resection - A Systems Medicine Approach) by grant number 436883643 and by grant number 465194077 (Priority Programme SPP 2311, Subproject SimLivA).
© 2016-2025 Matthias König
Owner
- Name: Matthias König
- Login: matthiaskoenig
- Kind: user
- Location: Berlin
- Company: Humboldt University
- Website: https://livermetabolism.com
- Repositories: 146
- Profile: https://github.com/matthiaskoenig
Matthias König (PhD. in Biophysics) leads a junior research group for Systems Biology and Systems Medicine of the liver.
GitHub Events
Total
- Create event: 8
- Release event: 3
- Issues event: 30
- Watch event: 2
- Delete event: 2
- Issue comment event: 9
- Push event: 66
- Pull request event: 5
Last Year
- Create event: 8
- Release event: 3
- Issues event: 30
- Watch event: 2
- Delete event: 2
- Issue comment event: 9
- Push event: 66
- Pull request event: 5
Committers
Last synced: about 1 year ago
Top Committers
| Name | Commits | |
|---|---|---|
| Matthias Koenig | k****t@g****m | 144 |
Issues and Pull Requests
Last synced: 8 months ago
All Time
- Total issues: 52
- Total pull requests: 9
- Average time to close issues: 7 months
- Average time to close pull requests: 3 minutes
- Total issue authors: 10
- Total pull request authors: 2
- Average comments per issue: 0.94
- Average comments per pull request: 0.33
- Merged pull requests: 9
- Bot issues: 0
- Bot pull requests: 1
Past Year
- Issues: 14
- Pull requests: 3
- Average time to close issues: 13 days
- Average time to close pull requests: less than a minute
- Issue authors: 1
- Pull request authors: 1
- Average comments per issue: 0.29
- Average comments per pull request: 0.0
- Merged pull requests: 3
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- matthiaskoenig (41)
- adrienrougny (2)
- weiheng-liao (2)
- ashtonteng (1)
- lhannest (1)
- vpodpecan (1)
- carissableker (1)
- MichalStefanic (1)
- annazhukova (1)
- pgleeson (1)
Pull Request Authors
- matthiaskoenig (11)
- github-actions[bot] (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- pypi 101 last-month
- Total dependent packages: 2
- Total dependent repositories: 8
- Total versions: 12
- Total maintainers: 1
pypi.org: libsbgnpy
libsbgnpy are python utilities for working with SBGN.
- Documentation: https://libsbgnpy.readthedocs.io/
- License: MIT License
-
Latest release: 0.4.1
published 11 months ago
Rankings
Maintainers (1)
Dependencies
- ipykernel >=5.1.4
- nbsphinx >=0.5.1
- sphinx >=2.4.4
- sphinx_rtd_theme >=0.4.3
- actions/checkout v2 composite
- actions/create-release v1 composite
- actions/setup-python v2 composite
- vsoch/pull-request-action 1.0.6 composite
- actions/checkout v4 composite
- astral-sh/ruff-action v3 composite
- annotated-types 0.7.0
- anyio 4.8.0
- bracex 2.5.post1
- bump-my-version 0.32.1
- cachetools 5.5.1
- certifi 2025.1.31
- cfgv 3.4.0
- chardet 5.2.0
- charset-normalizer 3.4.1
- click 8.1.8
- colorama 0.4.6
- coverage 7.6.12
- distlib 0.3.9
- exceptiongroup 1.2.2
- filelock 3.17.0
- h11 0.14.0
- httpcore 1.0.7
- httpx 0.28.1
- identify 2.6.7
- idna 3.10
- iniconfig 2.0.0
- libsbgnpy *
- lxml 5.3.1
- markdown-it-py 3.0.0
- mdurl 0.1.2
- mypy 1.15.0
- mypy-extensions 1.0.0
- nodeenv 1.9.1
- packaging 24.2
- platformdirs 4.3.6
- pluggy 1.5.0
- pre-commit 4.1.0
- prompt-toolkit 3.0.50
- pydantic 2.10.6
- pydantic-core 2.27.2
- pydantic-settings 2.7.1
- pygments 2.19.1
- pyproject-api 1.9.0
- pytest 8.3.4
- pytest-cov 6.0.0
- python-dotenv 1.0.1
- pyyaml 6.0.2
- questionary 2.1.0
- requests 2.32.3
- rich 13.9.4
- rich-click 1.8.5
- ruff 0.9.6
- sniffio 1.3.1
- tomli 2.2.1
- tomlkit 0.13.2
- tox 4.24.1
- typing-extensions 4.12.2
- urllib3 2.3.0
- virtualenv 20.29.2
- wcmatch 10.0
- wcwidth 0.2.13