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gfbio-dmp-tool

GFBio Data Management Planning Tool based on RDMO

https://github.com/gfbio/gfbio-dmp-tool

Science Score: 54.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (11.9%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

GFBio Data Management Planning Tool based on RDMO

Basic Info
  • Host: GitHub
  • Owner: gfbio
  • License: mit
  • Language: CSS
  • Default Branch: master
  • Homepage: https://dmp.gfbio.org
  • Size: 22.4 MB
Statistics
  • Stars: 1
  • Watchers: 12
  • Forks: 0
  • Open Issues: 0
  • Releases: 1
Created over 2 years ago · Last pushed 8 months ago
Metadata Files
Readme Contributing License Citation Zenodo

README.md

GFBio Data Management Planning Tool

DOI

Description

The system requires a working connection to an JIRA Service Management (server/data center) instance, since all communication with the users is organised via JIRA issues.

Developer Guide

Settings

Moved to settings

Basic Commands

Setting Up Your Users

  • To create a normal user account, just go to Sign Up and fill out the form. Once you submit it, you'll see a " Verify Your E-mail Address" page. Go to your console to see a simulated email verification message. Copy the link into your browser. Now the user's email should be verified and ready to go.

  • To create an superuser account, use this command::

    $ python manage.py createsuperuser

For convenience, you can keep your normal user logged in on Chrome and your superuser logged in on Firefox (or similar), so that you can see how the site behaves for both kinds of users.

Type checks

Running type checks with mypy:

  $ mypy gfbio_dmpt

Test coverage

To run the tests, check your test coverage, and generate an HTML coverage report::

$ coverage run -m pytest
$ coverage html
$ open htmlcov/index.html

Running tests with py.test

$ pytest

Live reloading and Sass CSS compilation

Moved to Live reloading and SASS compilation.

Celery

This app comes with Celery.

To run a celery worker:

cd gfbio_submissions
celery -A config.celery_app worker -l info

Please note: For Celery's import magic to work, it is important where the celery commands are run. If you are in the same folder with manage.py, you should be right.

Contact Us

Please email any questions and comments to our Service Helpdesk (info@gfbio.org).

Acknowledgements

  • This work was supported by the German Research Foundation (DFG) within the project “Establishment of the National Research Data Infrastructure (NFDI)” in the consortium NFDI4Biodiversity (project number 442032008).
  • This work was supported by the German Research Foundation (DFG) within the project "German Federation for Biological Data e.V.: Concept for a sustainable research data management of environmental data for Germany." (project number 408180549).

Owner

  • Name: GFBio
  • Login: gfbio
  • Kind: organization
  • Location: Germany

German Federation for Biological Data

Citation (CITATION.cff) 

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: "Weber"
  given-names: "Marc"
  orcid: "https://orcid.org/0000-0003-0694-5817"
- family-names: "Marinuks"
  given-names: "Deniss"
  orcid: "https://orcid.org/0000-0003-2350-0449"
- family-names: "Jimena"
  given-names: "Linares"
  orcid: "https://orcid.org/0000-0003-3847-2663"
- family-names: "Pfaff"
  given-names: "Claas-Thido"
  orcid: "https://orcid.org/0000-0003-1572-8590"
- family-names: "Kostadinov"
  given-names: "Ivaylo"
  orcid: "https://orcid.org/0000-0003-4476-6764"
title: "GFBio DMP Tool"
abstract: "GFBio DMP Tool based on RDMO"
type: software
doi: 10.5281/zenodo.8317197
keywords:
  - Research Software
  - Research Data Management
  - Biodiversity
  - Ecology
  - GFBio
license: MIT

GitHub Events

Total
  • Watch event: 1
  • Push event: 30
  • Create event: 9
Last Year
  • Watch event: 1
  • Push event: 30
  • Create event: 9

Dependencies

compose/local/django/Dockerfile docker
  • python ${PYTHON_VERSION} build
  • python latest build
compose/local/docs/Dockerfile docker
  • python 3.9-slim-buster build
compose/production/django/Dockerfile docker
  • python ${PYTHON_VERSION} build
  • python latest build
compose/production/postgres/Dockerfile docker
  • postgres 12.3 build
compose/production/traefik/Dockerfile docker
  • traefik v2.2.11 build
gfbio_dmpt/gfbio_dmpt_form/dmpt_app/package-lock.json npm
  • 1229 dependencies
gfbio_dmpt/gfbio_dmpt_form/dmpt_app/package.json npm
  • @babel/cli ^7.14.5 development
  • @babel/core ^7.14.6 development
  • @babel/node ^7.14.7 development
  • @babel/plugin-proposal-class-properties ^7.14.5 development
  • @babel/plugin-proposal-object-rest-spread ^7.14.7 development
  • @babel/plugin-syntax-dynamic-import ^7.8.3 development
  • @babel/plugin-syntax-import-meta ^7.10.4 development
  • @babel/plugin-transform-async-to-generator ^7.14.5 development
  • @babel/plugin-transform-runtime ^7.14.5 development
  • @babel/preset-env ^7.14.7 development
  • @babel/preset-react ^7.14.5 development
  • @babel/register ^7.14.5 development
  • @babel/runtime ^7.14.6 development
  • babel-core ^7.0.0-bridge.0 development
  • babel-eslint ^10.1.0 development
  • babel-jest ^26.6.3 development
  • babel-loader ^8.2.2 development
  • clean-webpack-plugin ^3.0.0 development
  • eslint ^7.31.0 development
  • eslint-config-airbnb ^18.2.1 development
  • eslint-config-prettier ^6.15.0 development
  • eslint-loader ^4.0.2 development
  • eslint-plugin-babel ^5.3.1 development
  • eslint-plugin-import ^2.23.4 development
  • eslint-plugin-jsx-a11y ^6.4.1 development
  • eslint-plugin-prettier ^3.4.0 development
  • eslint-plugin-react ^7.24.0 development
  • eslint-plugin-react-hooks ^4.2.0 development
  • file-loader ^6.2.0 development
  • html-webpack-plugin ^4.5.2 development
  • img-loader ^3.0.2 development
  • jest ^26.6.3 development
  • jest-dom ^4.0.0 development
  • prettier ^2.3.2 development
  • react-testing-library ^8.0.1 development
  • url-loader ^4.1.1 development
  • webpack ^4.46.0 development
  • webpack-cli ^3.3.12 development
  • webpack-dev-server ^3.11.2 development
  • webpack-jarvis ^0.3.2 development
  • webpack-merge ^4.2.2 development
  • @material-ui/core ^4.12.4
  • @types/react-stickynode ^4.0.0
  • axios ^0.21.4
  • bootstrap ^5.0.2
  • cross-env ^7.0.3
  • formik ^2.2.9
  • nanoid ^3.1.23
  • prop-types ^15.7.2
  • query-string ^7.1.1
  • react ^16.14.0
  • react-bootstrap ^1.6.1
  • react-dom ^16.14.0
  • react-loadingg ^1.7.2
  • react-redux ^7.2.4
  • react-router-dom ^5.2.0
  • react-stickynode ^4.0.0
  • redux ^4.1.0
  • redux-logger ^3.0.6
  • redux-thunk ^2.3.0
  • styled-components ^5.3.0
  • validator ^13.7.0
layout/package.json npm
  • autoprefixer ^10.4.0 development
  • browser-sync ^2.27.7 development
  • chokidar ^3.5.2 development
  • clean-css-cli ^5.4.2 development
  • concurrently ^6.4.0 development
  • node-sass ^6.0.1 development
  • postcss ^8.4.4 development
  • prettier ^2.5.0 development
  • sass ^1.44.0 development
  • shelljs ^0.8.4 development
  • upath ^2.0.1 development
  • @popperjs/core ^2.11.0
  • bootstrap ^5.1.3
requirements/base.txt pypi
  • Markdown *
  • defusedcsv *
  • defusedxml *
  • django-cleanup *
  • django-extensions *
  • django-filter *
  • django-libsass ==0.9
  • django-mathfilters *
  • django-mptt *
  • django-rest-swagger *
  • django-settings-export *
  • django-widget-tweaks *
  • drf-extensions *
  • iso8601 *
  • jira ==3.4.1
  • jsonfield *
  • mozilla-django-oidc ==3.0.0
  • pypandoc ==1.8.1
  • pytest-cov *
  • pytest-dotenv *
  • pytest-mock *
  • pytest-pythonpath *
  • rdmo *
  • rules ==3.3
requirements/local.txt pypi
  • pytest *
requirements/production.txt pypi