Recent Releases of rgrow

rgrow - v0.19.4

  • kcov:
    • Changes to cover+tile rates in the low-cover-concentration case.
  • Version used for DNA31 submission.

- Rust
Published by cgevans 11 months ago

rgrow - 0.19.3

  • kcov:
    • Disallow partially-blocked attachments by default.
    • Use full cover concentration calculations for attachment rate.

- Rust
Published by cgevans 11 months ago

rgrow - v0.19.2

  • Modified tube canvas format, now zig-zagging in the j direction rather than being diagonal. The older diagonal format is now TubeDiagonals.

- Rust
Published by cgevans 11 months ago

rgrow - v0.17.0

  • Significant change in Python organization: there are now model-specific System class, rather than one System class. Tileset definitions will return a specific class, and classes should eventually be able to be created directly. This should make it much easier to add ways to view and manipulate system objects in model-dependent ways.
  • Improvements to Python docstrings and type stubs.
  • Numerous code rearrangements for Python.

- Rust
Published by cgevans over 1 year ago

rgrow - v0.16.0

  • Improvements to FFS code organization.
  • Support for writing FFS results to files.
  • Improved FFS polars dataframe output creation:
    • configs now include tracking information, if present.
    • configs no longer breaks if keep_configs is false (shows last configurations)
  • Fix Python mismatch display code (some mismatches were not shown).

- Rust
Published by cgevans over 1 year ago

rgrow - v0.14.1

  • Fix dimer formation rates in kTAM model.
  • Fix k_f specification in kTAM model.

- Rust
Published by cgevans over 1 year ago

rgrow - v0.14.0

  • Allow state references to be cloned into normal states (useful for FFS results).
  • Add Python typing for FFS results.
  • Distinguish stored states and number of configurations for FFS surfaces.
  • Make FFS state references more useful.
  • Fix rayon use in Python (parallel execution).

- Rust
Published by cgevans almost 2 years ago

rgrow - v0.13.1

  • Allow Python compilation without ui.
  • Fix attachment order tracking.
  • Fix tube canvas N/S boundaries.
  • PyO3 0.21, with new Bound API.
  • Fix python tests.

- Rust
Published by cgevans almost 2 years ago

rgrow - v0.13.0

Significant Python refactoring, numerous improvements.

- Rust
Published by cgevans almost 2 years ago