relic

Tools for working with version-controlled data science workflows

https://github.com/ecohealthalliance/relic

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

✓
CITATION.cff file
Found CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
○
DOI references
○
Academic publication links
○
Committers with academic emails
○
Institutional organization owner
○
JOSS paper metadata
○
Scientific vocabulary similarity
Low similarity (19.7%) to scientific vocabulary

Last synced: 7 months ago · JSON representation ·

Repository

Tools for working with version-controlled data science workflows

Basic Info

Host: GitHub
Owner: ecohealthalliance
License: other
Language: R
Default Branch: main
Homepage:
Size: 858 KB

Statistics

Stars: 16
Watchers: 2
Forks: 2
Open Issues: 14
Releases: 0

Created over 2 years ago · Last pushed 12 months ago

Metadata Files

Readme Changelog Contributing License Code of conduct Citation Codemeta

README.Rmd

---
output: github_document
---



```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```

# relic: objects from history 


[![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)
[![R-CMD-check](https://github.com/ecohealthalliance/relic/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/ecohealthalliance/relic/actions/workflows/R-CMD-check.yaml)
[![codecov](https://codecov.io/gh/ecohealthalliance/relic/branch/main/graph/badge.svg)](https://codecov.io/gh/ecohealthalliance/relic)
[![relic on R-Universe](https://ecohealthalliance.r-universe.dev/badges/relic)](https://ecohealthalliance.r-universe.dev/relic)




> _And deeper than oblivion we do bury_  

> _The incensing relics of it_  

> William Shakespeare, [All's Well That Ends Well, V.3](https://internetshakespeare.uvic.ca/doc/AWW_M/scene/5.3/index.html)

The `relic` package provides tools for working with version-controlled workflows,
in git repositories. It enables extracting and comparing files and objects from project history.
You can use `relic` for tasks such as

  - Pulling a file from a previous version of your code
  - Creating a report (or a GIF!) that shows the evolution of a model object or output over
    the course of repository development
  - Run code repeatedly at many points along repository history to compare outputs
    or performance.

`relic` has specific functionality for working with [`targets`](https://books.ropensci.org/targets-manual) projects. It works
especially well when used in conjunction with [cloud-based, versioned object storage](https://books.ropensci.org/targets/cloud-storage.html).

## Installation

You can install the development version of `relic` from R-Universe like so:

```r
install.packages("relic", repos = "https://ecohealthalliance.r-universe.dev")
```


Or, you can build the source package from GitHub with

```r
devtools::install_github("ecohealthalliance/relic")
```


## Related work

 - [`git2r`](https://github.com/ropensci/git2r) is a low-level R interface to git, and is used by `relic`.
 - [`gert`](https://github.com/r-lib/gert) is an alternative, higher-level R interface to git especially suited to performing and automating git operations.
 - [`gittargets`](https://github.com/ropensci/gittargets) is an R package for versioning objects in the `targets` framework by placing binary objects in a separate git or Git LFS repository.
 - [`git2rdata`](https://github.com/ropensci/git2rdata/) is an R package for organizing tabular data to store in git repositories.
 - [`git2net`](https://github.com/gotec/git2net) is a Python package that facilitates network analysis of git repositories.
 - [`bisectr`](https://github.com/wch/bisectr) is an R package for running `git bisect` to find commits that introduced bugs in project history.
 - [`dolt`](https:://dolthub.com) is a relational database with git-like versioning and [doltr](https:://github.com/ecohealthalliance/doltr) is an R interface to it.
 
Find more related packages on [R-Universe](https://r-universe.dev/search/?q=git).

## Code of Conduct
  
Please note that the relic project is released with a [Contributor Code of Conduct](https://contributor-covenant.org/version/2/1/CODE_OF_CONDUCT.html). By contributing to this project, you agree to abide by its terms.

`relic` is developed at [EcoHealth Alliance](https://www.ecohealthalliance.org/). 

[![Created by EcoHealth Alliance](https://raw.githubusercontent.com/ropensci/citesdb/master/vignettes/figures/eha-footer.png)](https://www.ecohealthalliance.org/)

Owner

Name: EcoHealth Alliance
Login: ecohealthalliance
Kind: organization
Email: tech@ecohealthalliance.org
Location: New York, NY

Website: http://ecohealthalliance.org/
Repositories: 199
Profile: https://github.com/ecohealthalliance

Citation (CITATION.cff)

# -----------------------------------------------------------
# CITATION file created with {cffr} R package, v0.5.0
# See also: https://docs.ropensci.org/cffr/
# -----------------------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "relic" in publications use:'
type: software
license: MIT
title: 'relic: Objects from History'
version: 0.1.0.9000
abstract: Tools working with the history of version-controlled projects,
authors:
- family-names: Ross
  given-names: Noam
  email: ross@ecohealthalliance.org
  orcid: https://orcid.org/0000-0002-2136-0000
preferred-citation:
  type: manual
  title: 'relic: Tools for working with version-controlled data science workflows'
  authors:
  - family-names: Ross
    given-names: Noam
    email: ross@ecohealthalliance.org
    orcid: https://orcid.org/0000-0002-2136-0000
  year: '2024'
  edition: 0.1.0
  url: https://github.com/ecohealthalliance/relic
repository-code: https://github.com/ecohealthalliance/relic
url: https://ecohealthalliance.github.io/relic
contact:
- family-names: Ross
  given-names: Noam
  email: ross@ecohealthalliance.org
  orcid: https://orcid.org/0000-0002-2136-0000
references:
- type: software
  title: git2r
  abstract: 'git2r: Provides Access to Git Repositories'
  notes: Imports
  url: https://docs.ropensci.org/git2r/
  repository: https://ropensci.r-universe.dev
  authors:
  - family-names: file.
    given-names: See AUTHORS
  year: '2023'
- type: software
  title: fs
  abstract: 'fs: Cross-Platform File System Operations Based on ''libuv'''
  notes: Imports
  url: https://fs.r-lib.org
  repository: https://CRAN.R-project.org/package=fs
  authors:
  - family-names: Hester
    given-names: Jim
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
  - family-names: Csárdi
    given-names: Gábor
    email: csardi.gabor@gmail.com
  year: '2023'
- type: software
  title: rlang
  abstract: 'rlang: Functions for Base Types and Core R and ''Tidyverse'' Features'
  notes: Imports
  url: https://rlang.r-lib.org
  repository: https://CRAN.R-project.org/package=rlang
  authors:
  - family-names: Henry
    given-names: Lionel
    email: lionel@posit.co
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2023'
- type: software
  title: igraph
  abstract: 'igraph: Network Analysis and Visualization'
  notes: Suggests
  url: https://r.igraph.org/
  repository: https://CRAN.R-project.org/package=igraph
  authors:
  - family-names: Csárdi
    given-names: Gábor
    email: csardi.gabor@gmail.com
    orcid: https://orcid.org/0000-0001-7098-9676
  - family-names: Nepusz
    given-names: Tamás
    email: ntamas@gmail.com
    orcid: https://orcid.org/0000-0002-1451-338X
  - family-names: Traag
    given-names: Vincent
    orcid: https://orcid.org/0000-0003-3170-3879
  - family-names: Horvát
    given-names: Szabolcs
    email: szhorvat@gmail.com
    orcid: https://orcid.org/0000-0002-3100-523X
  - family-names: Zanini
    given-names: Fabio
    email: fabio.zanini@unsw.edu.au
    orcid: https://orcid.org/0000-0001-7097-8539
  - family-names: Noom
    given-names: Daniel
  - family-names: Müller
    given-names: Kirill
    email: kirill@cynkra.com
    orcid: https://orcid.org/0000-0002-1416-3412
  year: '2023'
- type: software
  title: knitr
  abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R'
  notes: Suggests
  url: https://yihui.org/knitr/
  repository: https://CRAN.R-project.org/package=knitr
  authors:
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  year: '2023'
- type: software
  title: rmarkdown
  abstract: 'rmarkdown: Dynamic Documents for R'
  notes: Suggests
  url: https://pkgs.rstudio.com/rmarkdown/
  repository: https://CRAN.R-project.org/package=rmarkdown
  authors:
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    given-names: JJ
    email: jj@posit.co
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  - family-names: Dervieux
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    email: cderv@posit.co
    orcid: https://orcid.org/0000-0003-4474-2498
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    email: kevin@posit.co
  - family-names: Atkins
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    email: aron@posit.co
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  - family-names: Cheng
    given-names: Joe
    email: joe@posit.co
  - family-names: Chang
    given-names: Winston
    email: winston@posit.co
  - family-names: Iannone
    given-names: Richard
    email: rich@posit.co
    orcid: https://orcid.org/0000-0003-3925-190X
  year: '2023'
- type: software
  title: targets
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  notes: Suggests
  url: https://docs.ropensci.org/targets/
  repository: https://ropensci.r-universe.dev
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  year: '2023'
- type: software
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  notes: Suggests
  url: https://testthat.r-lib.org
  repository: https://CRAN.R-project.org/package=testthat
  authors:
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    given-names: Hadley
    email: hadley@posit.co
  year: '2023'
  version: '>= 3.0.0'
- type: software
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  notes: Suggests
  url: https://github.com/moodymudskipper/devtag
  authors:
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  year: '2023'
- type: software
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  abstract: 'pkgcheck: rOpenSci Package Checks'
  notes: Suggests
  url: https://docs.ropensci.org/pkgcheck/
  repository: https://ropensci-review-tools.r-universe.dev
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    orcid: https://orcid.org/0000-0002-7281-3989
  year: '2023'
- type: software
  title: lintr
  abstract: 'lintr: A ''Linter'' for R Code'
  notes: Suggests
  url: https://lintr.r-lib.org
  repository: https://CRAN.R-project.org/package=lintr
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    given-names: Jim
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    orcid: https://orcid.org/0000-0003-1995-6531
  year: '2023'
- type: software
  title: processx
  abstract: 'processx: Execute and Control System Processes'
  notes: Suggests
  url: https://processx.r-lib.org
  repository: https://CRAN.R-project.org/package=processx
  authors:
  - family-names: Csárdi
    given-names: Gábor
    email: csardi.gabor@gmail.com
    orcid: https://orcid.org/0000-0001-7098-9676
  - family-names: Chang
    given-names: Winston
  year: '2023'
- type: software
  title: paws
  abstract: 'paws: Amazon Web Services Software Development Kit'
  notes: Suggests
  url: https://github.com/paws-r/paws
  repository: https://CRAN.R-project.org/package=paws
  authors:
  - family-names: Kretch
    given-names: David
    email: david.kretch@gmail.com
  - family-names: Banker
    given-names: Adam
    email: adam.banker39@gmail.com
  year: '2023'
- type: software
  title: httr
  abstract: 'httr: Tools for Working with URLs and HTTP'
  notes: Suggests
  url: https://httr.r-lib.org/
  repository: https://CRAN.R-project.org/package=httr
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2023'
- type: software
  title: autotest
  abstract: 'autotest: Automatic Package Testing'
  notes: Suggests
  url: https://docs.ropensci.org/autotest/
  repository: https://ropensci-review-tools.r-universe.dev
  authors:
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    given-names: Mark
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    orcid: https://orcid.org/0000-0003-2172-5265
  year: '2023'
- type: software
  title: callr
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  notes: Suggests
  url: https://callr.r-lib.org
  repository: https://CRAN.R-project.org/package=callr
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  - family-names: Chang
    given-names: Winston
  year: '2023'
- type: software
  title: spelling
  abstract: 'spelling: Tools for Spell Checking in R'
  notes: Suggests
  url: https://docs.ropensci.org/spelling/
  repository: https://CRAN.R-project.org/package=spelling
  authors:
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    given-names: Jim
    email: james.hester@rstudio.com
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identifiers:
- type: url
  value: https://ecohealthalliance.r-universe.dev/relic

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      ],
      "name": "relic: Tools for working with version-controlled data science workflows",
      "url": "https://github.com/ecohealthalliance/relic"
    }
  ]
}

GitHub Events

Total

Watch event: 3
Push event: 1
Fork event: 1

Last Year

Watch event: 3
Push event: 1
Fork event: 1

Committers

Last synced: 9 months ago

All Time

Total Commits: 75
Total Committers: 2
Avg Commits per committer: 37.5
Development Distribution Score (DDS): 0.027

Past Year

Commits: 2
Committers: 1
Avg Commits per committer: 2.0
Development Distribution Score (DDS): 0.0

Top Committers

Name	Email	Commits
Noam Ross	r**s@e**g	73
Noam Ross	n**s@g**m	2

Committer Domains (Top 20 + Academic)

ecohealthalliance.org: 1

Issues and Pull Requests

Last synced: 9 months ago

All Time

Total issues: 14
Total pull requests: 4
Average time to close issues: N/A
Average time to close pull requests: 37 minutes
Total issue authors: 1
Total pull request authors: 1
Average comments per issue: 0.0
Average comments per pull request: 0.75
Merged pull requests: 3
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 0
Pull requests: 0
Average time to close issues: N/A
Average time to close pull requests: N/A
Issue authors: 0
Pull request authors: 0
Average comments per issue: 0
Average comments per pull request: 0
Merged pull requests: 0
Bot issues: 0
Bot pull requests: 0

View more stats

Top Authors

Issue Authors

noamross (13)

Pull Request Authors

noamross (4)

Top Labels

Issue Labels

Pull Request Labels

Dependencies

.github/workflows/R-CMD-check.yaml actions

actions/checkout v3 composite
r-lib/actions/check-r-package v2 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/pkgcheck.yaml actions

ropensci-review-tools/pkgcheck-action main composite

.github/workflows/pkgdown.yaml actions

JamesIves/github-pages-deploy-action v4.4.1 composite
actions/checkout v3 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/pr-commands.yaml actions

actions/checkout v3 composite
r-lib/actions/pr-fetch v2 composite
r-lib/actions/pr-push v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/test-coverage.yaml actions

actions/checkout v3 composite
actions/upload-artifact v3 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

DESCRIPTION cran

fs * imports
git2r * imports
devtag * suggests
igraph * suggests
knitr * suggests
lintr * suggests
pkgcheck * suggests
rmarkdown * suggests
targets * suggests
testthat >= 3.0.0 suggests

.github/workflows/update-docs-and-meta.yaml actions

actions/checkout v3 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Open Source Science

relic

Science Score: 44.0%

Repository

Basic Info

Statistics

Metadata Files

README.Rmd

Owner

Citation (CITATION.cff)

CodeMeta (codemeta.json)

GitHub Events

Total

Last Year

Committers

All Time

Past Year

Top Committers

Committer Domains (Top 20 + Academic)

Issues and Pull Requests

All Time

Past Year

Top Authors

Issue Authors

Pull Request Authors

Top Labels

Issue Labels

Pull Request Labels

Dependencies