galaxy

a fork of Galaxy repo from https://github.com/galaxyproject/galaxy

https://github.com/pangalaxy/galaxy

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

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CITATION.cff file
Found CITATION.cff file
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codemeta.json file
Found codemeta.json file
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.zenodo.json file
Found .zenodo.json file
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DOI references
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Academic publication links
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Academic email domains
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Institutional organization owner
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (11.0%) to scientific vocabulary

Last synced: 10 months ago · JSON representation ·

Repository

a fork of Galaxy repo from https://github.com/galaxyproject/galaxy

Basic Info

Host: GitHub
Owner: PaNGalaxy
License: other
Language: Python
Default Branch: main
Size: 635 MB

Statistics

Stars: 3
Watchers: 4
Forks: 1
Open Issues: 0
Releases: 0

Created over 3 years ago · Last pushed 12 months ago

Metadata Files

Readme Contributing License Code of conduct Citation Security

README.rst

.. figure:: https://galaxyproject.org/images/galaxy-logos/galaxy_project_logo.jpg
   :alt: Galaxy Logo

The latest information about Galaxy can be found on the `Galaxy Community Hub `__.

Community support is available at `Galaxy Help `__.

.. image:: https://img.shields.io/badge/chat-gitter-blue.svg
    :target: https://gitter.im/galaxyproject/Lobby
    :alt: Chat on gitter

.. image:: https://img.shields.io/badge/chat-irc.freenode.net%23galaxyproject-blue.svg
    :target: https://webchat.freenode.net/?channels=galaxyproject
    :alt: Chat on irc

.. image:: https://img.shields.io/badge/release-documentation-blue.svg
    :target: https://docs.galaxyproject.org/en/master/
    :alt: Release Documentation

.. image:: https://travis-ci.org/galaxyproject/galaxy.svg?branch=dev
    :target: https://travis-ci.org/galaxyproject/galaxy
    :alt: Inspect the test results

Galaxy Quickstart
=================

Galaxy requires Python 3.8 or higher. To check your Python version, run:

.. code:: console

    $ python -V
    Python 3.8.18

Start Galaxy:

.. code:: console

    $ sh run.sh

Once Galaxy completes startup, you should be able to view Galaxy in your
browser at: http://localhost:8080

For more installation details please see: https://getgalaxy.org/

Documentation is available at: https://docs.galaxyproject.org/

Tutorials on how to use Galaxy, perform scientific analyses with it, develop Galaxy and its tools, and admin a Galaxy server are at: https://training.galaxyproject.org/

Tools
=====

Tools can be either installed from the Tool Shed or added manually.
For details please see the `tutorial `__.
Note that not all dependencies for the tools provided in the
``tool_conf.xml.sample`` are included. To install them please visit
"Manage dependencies" in the admin interface.

Issues and Galaxy Development
=============================

Please see `CONTRIBUTING.md `_ .

Owner

Name: PaNGalaxy
Login: PaNGalaxy
Kind: organization

Repositories: 2
Profile: https://github.com/PaNGalaxy

Organization for groups working on Photon and Neutron tools for Galaxy (https://galaxyproject.org)

Citation (CITATION)

If you use or extend Galaxy in your published work, please cite this
publication:

- The Galaxy Community. "The Galaxy platform for accessible, reproducible and collaborative
  biomedical analyses: 2022 update"
  Nucleic Acids Res. (2022) 50(W1):W345-W351 doi:10.1093/nar/gkac247

BibTeX format:

@article{10.1093/nar/gkac247,
  title = {The {Galaxy} platform for accessible, reproducible and collaborative biomedical analyses: 2022 update},
  author = {The Galaxy Community},
  journal = {Nucleic Acids Res.},
  doi = {10.1093/nar/gkac247},
  volume = {50},
  number = {W1},
  pages = {W345-W351},
  year = {2022},
  url = {https://doi.org/10.1093/nar/gkac247},
  publisher = {Oxford University Press}
}


More publications
-----------------

To cite specific Galaxy components/features or other Galaxy project
publications, see

https://galaxyproject.org/citing-galaxy

ecosyste.ms

Data

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Applications

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Open Source Science