elephant

Elephant is the Electrophysiology Analysis Toolkit

https://github.com/neuralensemble/elephant

Science Score: 38.0%

This score indicates how likely this project is to be science-related based on various indicators:

✓
CITATION.cff file
Found CITATION.cff file
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codemeta.json file
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.zenodo.json file
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DOI references
✓
Academic publication links
Links to: zenodo.org
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Committers with academic emails
17 of 49 committers (34.7%) from academic institutions
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Institutional organization owner
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (10.9%) to scientific vocabulary

Keywords

data-analysis electrophysiology hacktoberfest neurophysiology neuroscience python statistics

Last synced: 6 months ago · JSON representation ·

Repository

Elephant is the Electrophysiology Analysis Toolkit

Basic Info

Host: GitHub
Owner: NeuralEnsemble
License: bsd-3-clause
Language: Python
Default Branch: master
Homepage: http://www.python-elephant.org
Size: 6.95 MB

Statistics

Stars: 219
Watchers: 15
Forks: 94
Open Issues: 42
Releases: 22

Topics

data-analysis electrophysiology hacktoberfest neurophysiology neuroscience python statistics

Created almost 13 years ago · Last pushed 11 months ago

Metadata Files

Readme License Citation

README.md

Elephant - Electrophysiology Analysis Toolkit

Elephant package analyses all sorts of neurophysiological data: spike trains, LFP, analog signals. The input-output data format is either Neo, Quantity or Numpy array.

More Information

Documentation: https://elephant.readthedocs.io/en/latest/
Mailing list: https://groups.google.com/group/neuralensemble

Visualization of Elephant analysis objects

Viziphant package (https://github.com/INM-6/viziphant) is developed by Elephant team for plotting and visualization of the output of Elephant functions in a few lines of code.

License

Modified BSD License, see LICENSE.txt for details.

Copyright

:copyright: 2014-2024 by the Elephant team.

Acknowledgments

See acknowledgments.

Citation

See citations.

Owner

Name: NeuralEnsemble
Login: NeuralEnsemble
Kind: organization

Website: http://neuralensemble.org
Repositories: 25
Profile: https://github.com/NeuralEnsemble

Citation (CITATION.txt)

To refer to the Elephant software package in publications, please use 
    Elephant (RRID:SCR_003833)

To cite Elephant, please see doc/citation.rst.

GitHub Events

Total

Issues event: 6
Watch event: 21
Issue comment event: 27
Push event: 19
Pull request event: 32
Pull request review comment event: 42
Pull request review event: 47
Fork event: 3
Create event: 2

Last Year

Issues event: 6
Watch event: 21
Issue comment event: 27
Push event: 19
Pull request event: 32
Pull request review comment event: 42
Pull request review event: 47
Fork event: 3
Create event: 2

Committers

Last synced: over 2 years ago

All Time

Total Commits: 496
Total Committers: 49
Avg Commits per committer: 10.122
Development Distribution Score (DDS): 0.839

Past Year

Commits: 55
Committers: 10
Avg Commits per committer: 5.5
Development Distribution Score (DDS): 0.309

Top Committers

Name	Email	Commits
Moritz Kern	9****n	80
Danylo Ulianych	d**a@g**m	76
Alper Yegenoglu	a**u@f**e	51
Michael Denker	m**r@f**e	47
Andrew Davison	a**n@u**r	39
pbouss	3****s	23
Pietro Quaglio	p**o@f**e	20
Junji Ito	j**o@f**e	17
Detlef Holstein	d**n@u**r	13
rmeyes	r**s@f**e	12
Regimantas Jurkus	r**s@g**m	12
Alexander Kleinjohann	3****n	10
Daniel Müller	d**c@g**m	9
Richard C Gerkin	r**n@a**u	9
Todd Jennings	t**n@g**m	7
Cristiano Köhler	4****a	7
Aitor Morales-Gregorio	4****o	6
Richard C Gerkin	r**1@g**g	5
Andrew Davison	a**n@c**r	4
Emiliano Torre	e**e@f**e	3
Alessandra Stella	a**a@f**e	3
Julia Sprenger	j**r@r**e	3
Vahidrostami	v**i@g**m	3
Robin Gutzen	r**n@l**e	3
PaulinaDabrowska	p**a@f**e	3
Maximilian Kramer	5****a	3
Michael von Papen	m**n@f**e	2
Alexander van Meegen	3****n	2
EmanueleLucrezia	e**a@f**e	2
Anno Christopher Kurth	4****h	2
and 19 more...

Committer Domains (Top 20 + Academic)

fz-juelich.de: 14 unic.cnrs-gif.fr: 2 rediffmail.com: 1 telenczuk.pl: 1 live.de: 1 rwth-aachen.de: 1 cnrs.fr: 1 gerkin.org: 1 asu.edu: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time

Total issues: 51
Total pull requests: 179
Average time to close issues: over 1 year
Average time to close pull requests: 3 months
Total issue authors: 30
Total pull request authors: 21
Average comments per issue: 3.06
Average comments per pull request: 2.09
Merged pull requests: 126
Bot issues: 0
Bot pull requests: 1

Past Year

Issues: 7
Pull requests: 38
Average time to close issues: 8 days
Average time to close pull requests: 15 days
Issue authors: 7
Pull request authors: 3
Average comments per issue: 1.43
Average comments per pull request: 0.87
Merged pull requests: 12
Bot issues: 0
Bot pull requests: 0

View more stats

Top Authors

Issue Authors

mdenker (8)
Moritz-Alexander-Kern (4)
morales-gregorio (4)
rcpeene (4)
taningh86 (2)
ybernaerts (2)
Peyman7 (1)
smalsmal (1)
LaylaIlyas (1)
bxy666666 (1)
Celine-075 (1)
joschaschmiedt (1)
Samcrl0 (1)
apdavison (1)
kohlerca (1)

Pull Request Authors

Moritz-Alexander-Kern (127)
kohlerca (12)
mdenker (10)
rjurkus (5)
ojoenlanuca (5)
apdavison (4)
dizcza (4)
morales-gregorio (3)
pbouss (3)
ackurth (2)
zottelsheep (2)
ManuelCiba (2)
essink (2)
Junji110 (2)
github-actions[bot] (2)

Top Labels

Issue Labels

bug (13) enhancement (12) documentation (7) question (6) new functionality (4) wontfix (2) breaking-changes (1) provenance (1) Neo related (1) optimization (1)

Pull Request Labels

enhancement (35) bugfix (35) documentation (19) new functionality (10) maintenance (10) build html (3) Neo related (2) optimization (2) breaking-changes (2) bug (1) build (1) third-party (1)

Packages

Total packages: 1
Total downloads:
- pypi 20,518 last-month
Total docker downloads: 84

Total dependent packages: 9
Total dependent repositories: 50
Total versions: 27
Total maintainers: 5

pypi.org: elephant

Elephant is a package for analysis of electrophysiology data in Python

Homepage: http://python-elephant.org
Documentation: https://elephant.readthedocs.io/en/latest/
License: BSD
Latest release: 1.1.1
published over 1 year ago

Versions: 27
Dependent Packages: 9
Dependent Repositories: 50
Downloads: 20,518 Last month
Docker Downloads: 84

Rankings

Dependent packages count: 1.3%

Dependent repos count: 2.1%

Downloads: 2.2%

Docker downloads count: 2.5%

Average: 3.0%

Forks count: 4.7%

Stargazers count: 5.5%

Maintainers (5)

apdavison dizcza mdenker alper Moritz_A_K

Last synced: 7 months ago

Dependencies

.github/workflows/CI.yml actions

actions/cache v3 composite
actions/checkout v3 composite
actions/setup-python v4 composite
conda-incubator/setup-miniconda v2.2.0 composite

.github/workflows/build_wheels.yml actions

actions/checkout v3 composite
actions/setup-python v4 composite
actions/upload-artifact v3 composite

.github/workflows/ebrains.yml actions

wei/git-sync v3 composite

requirements/requirements-cuda.txt pypi

pycuda >=2020.1

requirements/requirements-docs.txt pypi

jupyter >=1.0.0
matplotlib >=3.3.2
nbsphinx >=0.8.0
numpydoc >=1.1.0
sphinx >=3.3.0
sphinx-tabs >=1.3.0
sphinxcontrib-bibtex ==1.0.0

requirements/requirements-extras.txt pypi

jinja2 >=2.11.2
pandas >=0.18.0
scikit-learn >=0.23.2
statsmodels >=0.12.1

requirements/requirements-opencl.txt pypi

pyopencl >=2020.2.2

requirements/requirements-tests.txt pypi

nixio >=1.5.0 test
pytest * test

requirements/requirements-tutorials.txt pypi

h5py >=3.1.0
matplotlib >=3.3.2
nixio >=1.5.0

requirements/requirements.txt pypi

neo >=0.10.0
numpy >=1.18.1
quantities >=0.12.1
scipy >=1.5.4
six >=1.10.0
tqdm *

requirements/environment.yml pypi

neo >=0.10.0
viziphant *

setup.py pypi