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Recent Releases of nf-aggregate

nf-aggregate - seqeralabs / nf-aggregate v0.7.0 - Ferrous Fennec

[0.7.0] - 2025-05-05

Special thanks to the following for their contributions to the release:

Thank you to everyone else that has contributed by reporting bugs, enhancements or in any other way, shape or form.

Enhancements & fixes

  • PR #88 - Update tw cli container version to 0.11.2 and allow .nextflow.log to be missing from tw call
  • PR #89 - Enable usage of external run dumps with nf-aggregate & update devcontainer specifications
  • PR #91 - Update benchmark report image to include a fix causing large memory footprint for reshaping large AWS cost report files

Software dependencies

| Dependency | Old version | New version | | ----------------- | ----------- | ----------- | | tower-cli | 0.9.2 | 0.11.2 | | BENCHMARK_REPORTS | sha-48cfed7 | sha-a6d15e8 |

What's Changed

  • Updated seqerarundumps container and error handling in script block by @FloWuenne in https://github.com/seqeralabs/nf-aggregate/pull/88
  • Enable using external run logs with nf-aggregate by @FloWuenne in https://github.com/seqeralabs/nf-aggregate/pull/89
  • Bumped version to 0.7.0 to prepare for release by @FloWuenne in https://github.com/seqeralabs/nf-aggregate/pull/90
  • Bump benchmark image version by @FloWuenne in https://github.com/seqeralabs/nf-aggregate/pull/91
  • Dev -> Main for release 0.7.0 by @FloWuenne in https://github.com/seqeralabs/nf-aggregate/pull/92

Full Changelog: https://github.com/seqeralabs/nf-aggregate/compare/0.6.0...0.7.0

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Published by maxulysse about 1 year ago

nf-aggregate - seqeralabs / nf-aggregate v0.6.0 - Ferrous Falcon

[0.6.0] - 2025-03-31

Credits

Special thanks to the following for their contributions to the release:

Thank you to everyone else that has contributed by reporting bugs, enhancements or in any other way, shape or form.

Enhancements & fixes

  • PR #71 - Reduce stuttering in nextflow_schema.json
  • PR #74 - Add process for generating Benchmark reports
  • PR #75 - Skip failed jobs in benchmarking report
  • PR #78 - Sync with nf-core tools 3.2.0
  • PR #80 - Snapshots for pipeline level tests with nft-utils
  • PR #81 - Update report parameters and fix option to remove cost analysis
  • PR #82 - Loosened samplesheet validation for benchmark groups
  • PR #84 - Added CUR2.0 support to benchmark reports and fixed task table cost

Software dependencies

| Dependency | Old version | New version | | ----------- | ----------- | ----------- | | multiqc | 1.21 | 1.27 |

NB: Dependency has been updated if both old and new version information is present.

NB: Dependency has been added if just the new version information is present.

NB: Dependency has been removed if new version information isn't present.

New Contributors

  • @edmundmiller made their first contribution in https://github.com/seqeralabs/nf-aggregate/pull/75
  • @flowuenne made their first contribution in https://github.com/seqeralabs/nf-aggregate/pull/73

Full Changelog: https://github.com/seqeralabs/nf-aggregate/compare/0.5.0...0.6.0

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Published by FloWuenne about 1 year ago

nf-aggregate - seqeralabs / nf-aggregate v0.5.0 - Ferrous Flamingo

[0.5.0] - 2024-11-12

Credits

Special thanks to the following for their contributions to the release:

Thank you to everyone else that has contributed by reporting bugs, enhancements or in any other way, shape or form.

Enhancements & fixes

  • PR #61 - Remove dependency on external library/grape
  • PR #63 - Add maxForks setting for Seqera CLI to overcome API issues
  • PR #65 - Replace eclint GHA by pre-commit
  • PR #67 - Update tests to use a non-fusion run from Seqera Cloud community/showcase
  • PR #69 - Fix parsing of extra args to tw CLI

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Published by drpatelh over 1 year ago

nf-aggregate - seqeralabs / nf-aggregate v0.4.0 - Ferrous Fossa

[0.4.0] - 2024-07-26

Credits

Special thanks to the following for their contributions to the release:

Thank you to everyone else that has contributed by reporting bugs, enhancements or in any other way, shape or form.

Enhancements & fixes

PR #52 - Organise results folder structure by pipeline PR #53 - Throw exception and terminate workflow in case config can't be read PR #57 - Check if fusion is enabled via the Platform API

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Published by drpatelh almost 2 years ago

nf-aggregate - seqeralabs / nf-aggregate v0.3.0 - Ferrous Fox

[0.3.0] - 2024-07-01

Credits

Special thanks to the following for their contributions to the release:

Thank you to everyone else that has contributed by reporting bugs, enhancements or in any other way, shape or form.

Enhancements & fixes

PR #49 - Add custom java truststore support and improved exception handling

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Published by drpatelh almost 2 years ago

nf-aggregate - seqeralabs / nf-aggregate v0.2.0 - Ferrous Ferret

[0.2.0] - 2024-05-29

Credits

Special thanks to the following for their contributions to the release:

Thank you to everyone else that has contributed by reporting bugs, enhancements or in any other way, shape or form.

Enhancements & fixes

PR #19 - Allow underscores in workspace name regex PR #22 - Copy in nf-test CI from nf-core/fetchngs PR #23 - Bump Platform CLI version to 0.9.2 PR #27 - Remove escape from TOWER_ACCESS_TOKEN env var PR #28 - Remove special chars from Seqera CLI version PR #29 - Bump image for PLOT_GANTT process for Singularity PR #30 - Skip Gantt plots with non-fusion runs PR #31 - Update Platform API URI PR #32 - Update all nf-core modules and subworkflows PR #33 - Remove docker.userEmulation PR #40 - Sync with nf-core tools 2.14.1

Software dependencies

| Dependency | Old version | New version | | ----------- | ----------- | ----------- | | multiqc | 1.18 | 1.21 | | tower-cli | 0.9.0 | 0.9.2 |

NB: Dependency has been updated if both old and new version information is present.

NB: Dependency has been added if just the new version information is present.

NB: Dependency has been removed if new version information isn't present.

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Published by drpatelh about 2 years ago

nf-aggregate - seqeralabs / nf-aggregate v0.1.0 - Ferrous Frog

What's Changed

  • Update pipeline-gantt.py by @robsyme in https://github.com/seqeralabs/nf-aggregate/pull/1
  • Use default "unknown" machine type if not specified in fusion logs (likely head node) by @robsyme in https://github.com/seqeralabs/nf-aggregate/pull/2
  • Parameter for apiurl and get runname and workDir from Seqera Platform API by @robsyme in https://github.com/seqeralabs/nf-aggregate/pull/5
  • Add gitpod yml by @pinin4fjords in https://github.com/seqeralabs/nf-aggregate/pull/8
  • Minor doc fixes by @pinin4fjords in https://github.com/seqeralabs/nf-aggregate/pull/9
  • Add devcontainer by @pinin4fjords in https://github.com/seqeralabs/nf-aggregate/pull/10
  • Publish runs dump by pipeline name by @drpatelh in https://github.com/seqeralabs/nf-aggregate/pull/12
  • Set up for nf-test by @pinin4fjords in https://github.com/seqeralabs/nf-aggregate/pull/11
  • Add gantt plot nf-test by @pinin4fjords in https://github.com/seqeralabs/nf-aggregate/pull/13
  • Add pipeline-level nf-tests by @pinin4fjords in https://github.com/seqeralabs/nf-aggregate/pull/14
  • Move nf-test files and container definitions by @drpatelh in https://github.com/seqeralabs/nf-aggregate/pull/15
  • Update CHANGELOG and bump pipeline version by @drpatelh in https://github.com/seqeralabs/nf-aggregate/pull/17

New Contributors

  • @robsyme made their first contribution in https://github.com/seqeralabs/nf-aggregate/pull/1
  • @pinin4fjords made their first contribution in https://github.com/seqeralabs/nf-aggregate/pull/8
  • @drpatelh made their first contribution in https://github.com/seqeralabs/nf-aggregate/pull/12

Full Changelog: https://github.com/seqeralabs/nf-aggregate/commits/0.1.0

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Published by drpatelh over 2 years ago