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eCobidas

Working repository to turn the COBIDAS guidelines to report methods and results in neuroimaging into a user friendly checklist

https://github.com/ohbm/eCobidas

Science Score: 57.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 3 DOI reference(s) in README
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (9.4%) to scientific vocabulary

Keywords

brainweb checklist closember eeg eyetracking fmri meg mri neuroimaging positron-emission-tomography reproducibility reproducible-analysis transparency
Last synced: 6 months ago · JSON representation ·

Repository

Working repository to turn the COBIDAS guidelines to report methods and results in neuroimaging into a user friendly checklist

Basic Info
Statistics
  • Stars: 39
  • Watchers: 10
  • Forks: 24
  • Open Issues: 19
  • Releases: 2
Topics
brainweb checklist closember eeg eyetracking fmri meg mri neuroimaging positron-emission-tomography reproducibility reproducible-analysis transparency
Created almost 7 years ago · Last pushed 6 months ago
Metadata Files
Readme Contributing License Citation

README.md

DOI<!-- ALL-CONTRIBUTORS-BADGE:START - Do not remove or modify this section --> All Contributors <!-- ALL-CONTRIBUTORS-BADGE:END -->

checklist

COBIDAS guidelines checklist

The main aim of this project is to improve reporting methods and results in neuroimaging (f/MRI, i/EEG, MEG, PET...) in order to increase transparency and reproducibility.

We want to do this by developing checklists, based on best practices, guidelines that are both easy and practical to use, and that provides a computer readable output that can be used to automatically generate parts of the methods section of an article.

Prototypes

See our list available apps.

Want to know more ?

You want to know more about:

  • the motivations behind the project?
  • the different goals of the project?
  • how it is implemented?

Head over to our documentation

How to reach us

See our contact page.

How to contribute

We are looking for people to give us feedback or help us move forward.

If you are interested, check our documentation for contributors.

Owner

  • Name: Organization for Human Brain Mapping
  • Login: ohbm
  • Kind: organization

Citation (CITATION.cff) 

# schema: https://github.com/citation-file-format/citation-file-format/blob/main/schema-guide.md

cff-version: 1.2.0

title: bids-specification

abstract: |
  Working repository to turn the COBIDAS guidelines
  to report methods and results in neuroimaging
  into a user friendly checklist.

version: v1.0.0-dev

license: GPL-3.0

repository-code: https://github.com/ohbm/eCobidas.git

message: Please cite preferentially using the open science framework DOI.

identifiers:

- description: open science framework
  type: doi
  value: 10.17605/OSF.IO/ANVQY

- description: zenodo
  type: doi
  value: 10.5281/zenodo.4095367

keywords:
- checklist
- neuroimaging
- methods

authors:
- given-names: Remi
  family-names: Gau
  website: https://remi-gau.github.io/
- given-names: cassgvp
  website: https://github.com/cassgvp
- given-names: joyswe
  website: https://github.com/joyswe
- given-names: Federico
  family-names: Adolfi
  website: https://github.com/fedeadolfi
- given-names: Sanu
  family-names: Ann Abraham
  website: https://github.com/sanuann
- given-names: Thomas
  family-names: Nichols
  website: http://www.nisox.org
- given-names: Anisha
  family-names: Keshavan
  website: https://anisha.pizza
- given-names: Satrajit
  family-names: Ghosh
  website: http://satra.cogitatum.org
- given-names: Tim
  family-names: van Mourik
  website: https://github.com/TimVanMourik
- given-names: m-miedema
  website: https://github.com/m-miedema
- given-names: David
  family-names: Moreau
  website: https://github.com/davidmoreau
- given-names: Zsuzsika
  family-names: Sjoerds
  website: https://zsjoerds.com
- given-names: angietep
  website: https://github.com/angietep
- given-names: Martina
  family-names: G. Vilas
  website: http://martinagvilas.github.io
- given-names: Kristina
  family-names: Wiebels
  website: https://github.com/kwiebels
- given-names: Johannes
  family-names: Algermissen
  website: https://github.com/johalgermissen
- given-names: Dorien
  family-names: Huijser
  website: https://github.com/DorienHuijser
- given-names: Wouter
  family-names: Weeda
  website: https://github.com/wdweeda
- given-names: jasminetan6032
  website: https://github.com/jasminetan6032
- given-names: MarCordero
  website: https://github.com/MarCordero
- given-names: Cyril
  family-names: Pernet
  website: http://www.sbirc.ed.ac.uk/cyril/
- given-names: lspieser
  website: https://github.com/lspieser

GitHub Events

Total
  • Push event: 5
  • Pull request event: 4
  • Create event: 2
Last Year
  • Push event: 5
  • Pull request event: 4
  • Create event: 2

Dependencies

npm-requirements.txt pypi
  • jsonlint *
  • remark-cli *
  • remark-lint *
  • remark-preset-lint-consistent *
  • remark-preset-lint-markdown-style-guide *
  • remark-preset-lint-recommended *
python/requirements.txt pypi
  • Jinja2 ==3.0.1
  • black *
  • click *
  • numpy *
  • pandas *
  • pytest *
  • pytest-cov *
  • reproschema ==0.6.1
  • requests_cache *
  • rich *
requirements.txt pypi
  • mkdocs-material *
  • nb_black ==1.0.7
  • pre-commit *
  • pymdown-extensions *
.github/workflows/check_md_links.yml actions
  • actions/checkout master composite
  • gaurav-nelson/github-action-markdown-link-check v1 composite
.github/workflows/publishdocs.yaml actions
  • actions/checkout v1 composite
  • mhausenblas/mkdocs-deploy-gh-pages master composite
.github/workflows/test_and_coverage.yml actions
  • actions/checkout v2 composite
  • actions/setup-python v4 composite
  • codecov/codecov-action v3 composite
.github/workflows/validate.yml actions
  • actions/checkout v2 composite
  • actions/setup-node v3 composite
  • actions/setup-python v4 composite