xmip
Analysis ready CMIP6 data in python the easy way with pangeo tools.
Science Score: 77.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 2 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
✓Committers with academic emails
5 of 11 committers (45.5%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (17.1%) to scientific vocabulary
Keywords
Keywords from Contributors
Repository
Analysis ready CMIP6 data in python the easy way with pangeo tools.
Basic Info
- Host: GitHub
- Owner: jbusecke
- License: apache-2.0
- Language: Jupyter Notebook
- Default Branch: main
- Homepage: https://cmip6-preprocessing.readthedocs.io/en/latest/?badge=latest
- Size: 20.4 MB
Statistics
- Stars: 203
- Watchers: 9
- Forks: 44
- Open Issues: 74
- Releases: 34
Topics
Metadata Files
README.md
Science is not immune to racism. Academia is an elitist system with numerous gatekeepers that has mostly allowed a very limited spectrum of people to pursue a career. I believe we need to change that.
Open source development and reproducible science are a great way to democratize the means for scientific analysis. But you can't git clone software if you are being murdered by the police for being Black!
Free access to software and hollow diversity statements are hardly enough to crush the systemic and institutionalized racism in our society and academia.
If you are using this package, I ask you to go beyond just speaking out and donate here to Data for Black Lives and Black Lives Matter Action.
I explicitly welcome suggestions regarding the wording of this statement and for additional organizations to support. Please raise an issue for suggestions.
xmip (formerly cmip6_preprocessing)
This package facilitates the cleaning, organization and interactive analysis of Model Intercomparison Projects (MIPs) within the Pangeo software stack.
Are you interested in CMIP6 data, but find that is is not quite analysis ready? Do you just want to run a simple (or complicated) analysis on various models and end up having to write logic for each seperate case, because various datasets still require fixes to names, coordinates, etc.? Then this package is for you.
Developed during the cmip6-hackathon this package provides utility functions that play nicely with intake-esm.
We currently support the following functions
- Preprocessing CMIP6 data (Please check out the tutorial for some examples using the pangeo cloud). The preprocessig includes: a. Fix inconsistent naming of dimensions and coordinates b. Fix inconsistent values,shape and dataset location of coordinates c. Homogenize longitude conventions d. Fix inconsistent units
- Creating large scale ocean basin masks for arbitrary model output
The following issues are under development: 1. Reconstruct/find grid metrics 2. Arrange different variables on their respective staggered grid, so they can work seamlessly with xgcm
Check out this recent Earthcube notebook (cite via doi: 10.1002/essoar.10504241.1) for a high level demo of xmip and xgcm.
Installation
Install xmip via pip:
pip install xmip
or conda:
conda install -c conda-forge xmip
To install the newest main from github you can use pip aswell:
pip install git+pip install git+https://github.com/jbusecke/xmip.git
Owner
- Name: Julius Busecke
- Login: jbusecke
- Kind: user
- Location: Brooklyn, New York
- Company: Columbia/LDEO -- @ocean-transport
- Website: http://www.juliusbusecke.com
- Twitter: JuliusBusecke
- Repositories: 160
- Profile: https://github.com/jbusecke
Climate Scientist | Oceanographer | Open Source Developer
Citation (CITATION.cff)
cff-version: 1.2.0 message: "If you use this software, please cite it as below." authors: - family-names: "Busecke" given-names: "Julius J. M." orcid: "https://orcid.org/0000-0001-8571-865X" - family-names: "Spring" given-names: "Aaron" orcid: "https://orcid.org/0000-0003-0216-2241" - family-names: "Maroon" given-names: "Elizabeth" orcid: "https://orcid.org/0000-0002-1660-7822" - family-names: "Nicholas" given-names: "Thomas" orcid: "https://orcid.org/0000-0002-2176-0530" - family-names: "Magin" given-names: "Justus" orcid: "https://orcid.org/0000-0002-4254-8002" affiliation: "IFREMER" - family-names: "Ritschel" given-names: "Markus" orcid: "https://orcid.org/0000-0001-7464-7075" affiliation: "Universität Hamburg, Germany" - family-names: "Angevaare" given-names: "Joran J. R." orcid: "https://orcid.org/0000-0003-3392-8123" affiliation: "KNMI" title: "xMIP" url: "https://github.com/jbusecke/xMIP" # version and doi are completed by Zenodo automatically, do not provide here.
GitHub Events
Total
- Issues event: 2
- Watch event: 4
- Delete event: 2
- Issue comment event: 6
- Push event: 5
- Pull request event: 6
- Create event: 3
Last Year
- Issues event: 2
- Watch event: 4
- Delete event: 2
- Issue comment event: 6
- Push event: 5
- Pull request event: 6
- Create event: 3
Committers
Last synced: 4 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Julius Busecke | j****s@l****u | 420 |
| Julius Busecke | j****e@p****u | 57 |
| dependabot[bot] | 4****] | 50 |
| pre-commit-ci[bot] | 6****] | 13 |
| AS | a****g@m****e | 12 |
| Joran R. Angevaare | j****e@g****m | 4 |
| markusritschel | g****b@m****e | 3 |
| Elizabeth Maroon | e****n@w****u | 1 |
| Emma Boland | e****p@b****k | 1 |
| Tom Nicholas | 3****s | 1 |
| readthedocs-assistant | 9****t | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 4 months ago
All Time
- Total issues: 65
- Total pull requests: 118
- Average time to close issues: 3 months
- Average time to close pull requests: 21 days
- Total issue authors: 24
- Total pull request authors: 10
- Average comments per issue: 2.92
- Average comments per pull request: 0.94
- Merged pull requests: 93
- Bot issues: 0
- Bot pull requests: 73
Past Year
- Issues: 3
- Pull requests: 7
- Average time to close issues: N/A
- Average time to close pull requests: about 1 month
- Issue authors: 3
- Pull request authors: 2
- Average comments per issue: 1.0
- Average comments per pull request: 0.29
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 7
Top Authors
Issue Authors
- jbusecke (36)
- jdldeauna (4)
- znicholls (3)
- JoranAngevaare (2)
- emaroon (2)
- BenF1998 (1)
- Recalculate (1)
- emmomp (1)
- rabernat (1)
- tessjacobson (1)
- BWBlack (1)
- hmkhatri (1)
- scoatsclim (1)
- jwy-wbe (1)
- rljacob (1)
Pull Request Authors
- dependabot[bot] (78)
- jbusecke (40)
- pre-commit-ci[bot] (21)
- JoranAngevaare (7)
- emmomp (2)
- briochemc (2)
- jdldeauna (2)
- emaroon (1)
- rwegener2 (1)
- readthedocs-assistant (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- pypi 1,251 last-month
- Total dependent packages: 1
- Total dependent repositories: 1
- Total versions: 4
- Total maintainers: 1
pypi.org: xmip
Analysis ready CMIP6 data the easy way
- Homepage: https://github.com/jbusecke/xmip
- Documentation: https://xmip.readthedocs.io/
- License: Apache
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Latest release: 0.7.2
published about 2 years ago
Rankings
Maintainers (1)
Dependencies
- actions/checkout v3 composite
- codecov/codecov-action v3.1.1 composite
- mamba-org/provision-with-micromamba main composite
- xarray-contrib/ci-trigger v1 composite
- actions/cache v3 composite
- actions/checkout v3 composite
- conda-incubator/setup-miniconda v2.2.0 composite
- actions/checkout v3 composite
- actions/download-artifact v3 composite
- actions/setup-python v4 composite
- actions/upload-artifact v3 composite
- pypa/gh-action-pypi-publish v1.6.4 composite
- cartopy
- ipykernel
- ipython
- nc-time-axis
- numpydoc
- pandoc
- pint
- pip
- recommonmark
- sphinx
- sphinx_rtd_theme