Recent Releases of dockstore-cli
dockstore-cli - 1.17.0
What's Changed
- fix develop nightly builds by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/297
- allow nightly builds to ignore artifact uploads from feature branches by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/299
- update toil and resurrect tests by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/300
- Use reusable deploy artifacts workflow by @kathy-t in https://github.com/dockstore/dockstore-cli/pull/298
- Compatible with (but not mandatory) Java 21 by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/293
- update keylist by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/302
- prep for dropwizard update in develop by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/303
- core update to 1.17.0-alpha.2 by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/304
- Bump org.apache.commons:commons-vfs2 from 2.9.0 to 2.10.0 in /dockstore-client by @dependabot in https://github.com/dockstore/dockstore-cli/pull/305
Full Changelog: https://github.com/dockstore/dockstore-cli/compare/1.16.0...1.17.0
- Java
Published by denis-yuen 10 months ago
dockstore-cli - 1.15.1
What's Changed
- Updating cwltool dependencies by @david4096 in https://github.com/dockstore/dockstore-cli/pull/291
Full Changelog: https://github.com/dockstore/dockstore-cli/compare/1.15.0...1.15.1
- Java
Published by kathy-t over 1 year ago
dockstore-cli - 1.15.0
See https://github.com/dockstore/dockstore/releases/tag/1.15.0 for a human-readable summary
What's Changed
- Ensuring that Dockstore Yaml Validate Rejects .dockstore.yml files that are missing or have an empty primaryDescriptorPath by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/235
- dropwizard 4 update by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/238
- replace expired docker image by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/240
- rename reports to avoid clash by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/242
- add github actions for release by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/241
- Remove wes checks that are never executed by @kathy-t in https://github.com/dockstore/dockstore-cli/pull/245
- add auto deploy for testing by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/246
- fix cron build by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/247
- Remove swagger client in favour of openapi client by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/249
- Check license file via GitHub action by @coverbeck in https://github.com/dockstore/dockstore-cli/pull/250
- new broad artifactory location by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/251
- DOCK-2323: Log source and destination paths for file provisioning by @hyunnaye in https://github.com/dockstore/dockstore-cli/pull/252
- bom update by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/254
- fix cron build by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/253
- Re-enable failing CLI Test by @coverbeck in https://github.com/dockstore/dockstore-cli/pull/256
- add broad mirror by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/258
- update dockstore version by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/260
- Bump actions/checkout from 3 to 4 by @dependabot in https://github.com/dockstore/dockstore-cli/pull/257
- DOCK-2262: invalidates relative path yml files by @hyunnaye in https://github.com/dockstore/dockstore-cli/pull/255
- update to latest 1.15 alpha by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/261
- need this for failing cron with current develop by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/263
- Bump actions/setup-java from 3 to 4 by @dependabot in https://github.com/dockstore/dockstore-cli/pull/267
- finish deprecation of author in favour of authors array by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/269
- cwlavro update (#271) by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/273
- test core update by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/275
Full Changelog: https://github.com/dockstore/dockstore-cli/compare/1.14.0...1.15.0
- Java
Published by denis-yuen about 2 years ago
dockstore-cli - 1.14.0
What's Changed
- Update PR template for docs by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/187
- Add review instructions by @coverbeck in https://github.com/dockstore/dockstore-cli/pull/199
- Use new cromwell version by @kathy-t in https://github.com/dockstore/dockstore-cli/pull/201
- clear out a few dependencies by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/205
- reduce pin by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/206
- assign reviewers for dependabot by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/207
- SEAB-4927 Restricted postgres dependency to only test by @hyunnaye in https://github.com/dockstore/dockstore-cli/pull/204
- switch to github lgtm by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/208
- SEAB-5021: Confirm support for CWL Version 1.2 by @svonworl in https://github.com/dockstore/dockstore-cli/pull/209
- Bump slackapi/slack-github-action from 1.19.0 to 1.23.0 by @dependabot in https://github.com/dockstore/dockstore-cli/pull/192
- java 17 and compile issue with trs api by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/211
- Update template with security section by @coverbeck in https://github.com/dockstore/dockstore-cli/pull/212
- rotate bundle by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/213
- Deleted the zip file once it is unzipped. by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/216
- Added a ToilCompatibleTest class to CLI by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/215
- DOCK-2219: removed upgrade to unstable version message by @hyunnaye in https://github.com/dockstore/dockstore-cli/pull/218
- webservice update for better bitbucket behaviour and new cache strategy for circle-ci by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/217
- Feature/junit5 by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/214
- update vfs, hook-up cromwell for progress bar by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/219
- Display server-url by @KimberleyChong in https://github.com/dockstore/dockstore-cli/pull/220
- Feature/bom update - test optimization by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/223
- Give Suggestions to User if they Enter an Incorrect Command by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/221
- Made error messages in CLI more user friendly by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/222
- Feature/2309/workflow entryname hosted and apps by @Richard-Hansen in https://github.com/dockstore/dockstore-cli/pull/52
- SEAB-5247: Add MuteForSuccessfulTests extension to CLI by @svonworl in https://github.com/dockstore/dockstore-cli/pull/224
- Fix Incorrect WDL validation by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/225
- CLI Using Beta TRS API - SEAB-5206 by @KimberleyChong in https://github.com/dockstore/dockstore-cli/pull/226
- Corrected Typos found in CLI by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/227
- bom update by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/228
- Fix Incorrect Help Page and made tests around help pages more robust by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/231
- update docker compose by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/230
- Moved CWL and WDL to constants by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/232
- Fix Yaml Validation for when testParameterFiles is empty or non-existent by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/233
- Feature/dock 2353/hello world workflow fails by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/236
- DOCK-2349: added error handling message for CWL JSON conversion by @hyunnaye in https://github.com/dockstore/dockstore-cli/pull/237
New Contributors
- @hyunnaye made their first contribution in https://github.com/dockstore/dockstore-cli/pull/204
- @KimberleyChong made their first contribution in https://github.com/dockstore/dockstore-cli/pull/220
Full Changelog: https://github.com/dockstore/dockstore-cli/compare/1.13.1...1.14.0
- Java
Published by denis-yuen almost 3 years ago
dockstore-cli - 1.14.0-rc.0
What's Changed
- Update PR template for docs by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/187
- Add review instructions by @coverbeck in https://github.com/dockstore/dockstore-cli/pull/199
- Use new cromwell version by @kathy-t in https://github.com/dockstore/dockstore-cli/pull/201
- clear out a few dependencies by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/205
- reduce pin by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/206
- assign reviewers for dependabot by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/207
- SEAB-4927 Restricted postgres dependency to only test by @hyunnaye in https://github.com/dockstore/dockstore-cli/pull/204
- switch to github lgtm by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/208
- SEAB-5021: Confirm support for CWL Version 1.2 by @svonworl in https://github.com/dockstore/dockstore-cli/pull/209
- Bump slackapi/slack-github-action from 1.19.0 to 1.23.0 by @dependabot in https://github.com/dockstore/dockstore-cli/pull/192
- java 17 and compile issue with trs api by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/211
- Update template with security section by @coverbeck in https://github.com/dockstore/dockstore-cli/pull/212
- rotate bundle by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/213
- Deleted the zip file once it is unzipped. by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/216
- Added a ToilCompatibleTest class to CLI by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/215
- DOCK-2219: removed upgrade to unstable version message by @hyunnaye in https://github.com/dockstore/dockstore-cli/pull/218
- webservice update for better bitbucket behaviour and new cache strategy for circle-ci by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/217
- Feature/junit5 by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/214
- update vfs, hook-up cromwell for progress bar by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/219
- Display server-url by @KimberleyChong in https://github.com/dockstore/dockstore-cli/pull/220
- Feature/bom update - test optimization by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/223
- Give Suggestions to User if they Enter an Incorrect Command by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/221
- Made error messages in CLI more user friendly by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/222
- Feature/2309/workflow entryname hosted and apps by @Richard-Hansen in https://github.com/dockstore/dockstore-cli/pull/52
- SEAB-5247: Add MuteForSuccessfulTests extension to CLI by @svonworl in https://github.com/dockstore/dockstore-cli/pull/224
- Fix Incorrect WDL validation by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/225
- CLI Using Beta TRS API - SEAB-5206 by @KimberleyChong in https://github.com/dockstore/dockstore-cli/pull/226
- Corrected Typos found in CLI by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/227
- bom update by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/228
- Fix Incorrect Help Page and made tests around help pages more robust by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/231
- update docker compose by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/230
- Moved CWL and WDL to constants by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/232
- Fix Yaml Validation for when testParameterFiles is empty or non-existent by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/233
- Feature/dock 2353/hello world workflow fails by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/236
- DOCK-2349: added error handling message for CWL JSON conversion by @hyunnaye in https://github.com/dockstore/dockstore-cli/pull/237
New Contributors
- @hyunnaye made their first contribution in https://github.com/dockstore/dockstore-cli/pull/204
- @KimberleyChong made their first contribution in https://github.com/dockstore/dockstore-cli/pull/220
Full Changelog: https://github.com/dockstore/dockstore-cli/compare/1.13.1...1.14.0-rc.0
- Java
Published by kathy-t almost 3 years ago
dockstore-cli - 1.14.0-beta.0
What's Changed
- Update PR template for docs by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/187
- Add review instructions by @coverbeck in https://github.com/dockstore/dockstore-cli/pull/199
- Use new cromwell version by @kathy-t in https://github.com/dockstore/dockstore-cli/pull/201
- clear out a few dependencies by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/205
- reduce pin by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/206
- assign reviewers for dependabot by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/207
- SEAB-4927 Restricted postgres dependency to only test by @hyunnaye in https://github.com/dockstore/dockstore-cli/pull/204
- switch to github lgtm by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/208
- SEAB-5021: Confirm support for CWL Version 1.2 by @svonworl in https://github.com/dockstore/dockstore-cli/pull/209
- Bump slackapi/slack-github-action from 1.19.0 to 1.23.0 by @dependabot in https://github.com/dockstore/dockstore-cli/pull/192
- java 17 and compile issue with trs api by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/211
- Update template with security section by @coverbeck in https://github.com/dockstore/dockstore-cli/pull/212
- rotate bundle by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/213
- Deleted the zip file once it is unzipped. by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/216
- Added a ToilCompatibleTest class to CLI by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/215
- DOCK-2219: removed upgrade to unstable version message by @hyunnaye in https://github.com/dockstore/dockstore-cli/pull/218
- webservice update for better bitbucket behaviour and new cache strategy for circle-ci by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/217
- Feature/junit5 by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/214
- update vfs, hook-up cromwell for progress bar by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/219
- Display server-url by @KimberleyChong in https://github.com/dockstore/dockstore-cli/pull/220
- Feature/bom update - test optimization by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/223
- Give Suggestions to User if they Enter an Incorrect Command by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/221
- Made error messages in CLI more user friendly by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/222
- Feature/2309/workflow entryname hosted and apps by @Richard-Hansen in https://github.com/dockstore/dockstore-cli/pull/52
- SEAB-5247: Add MuteForSuccessfulTests extension to CLI by @svonworl in https://github.com/dockstore/dockstore-cli/pull/224
- Fix Incorrect WDL validation by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/225
- CLI Using Beta TRS API - SEAB-5206 by @KimberleyChong in https://github.com/dockstore/dockstore-cli/pull/226
- Corrected Typos found in CLI by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/227
- bom update by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/228
- Fix Incorrect Help Page and made tests around help pages more robust by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/231
- update docker compose by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/230
- Moved CWL and WDL to constants by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/232
- Fix Yaml Validation for when testParameterFiles is empty or non-existent by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/233
New Contributors
- @hyunnaye made their first contribution in https://github.com/dockstore/dockstore-cli/pull/204
- @KimberleyChong made their first contribution in https://github.com/dockstore/dockstore-cli/pull/220
Full Changelog: https://github.com/dockstore/dockstore-cli/compare/1.13.1...1.14.0-beta.0
- Java
Published by denis-yuen almost 3 years ago
dockstore-cli - 1.13.1
Fixes dockstore/dockstore#5183
- Java
Published by coverbeck over 3 years ago
dockstore-cli - 1.13.0
What's Changed
- bump cromwell version and exclude new jackson core by @wshands in https://github.com/dockstore/dockstore-cli/pull/129
- Feature/fix develop build by @Richard-Hansen in https://github.com/dockstore/dockstore-cli/pull/132
- Feature/hmmm upgrades by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/135
- Bump slackapi/slack-github-action from 1.16.0 to 1.18.0 by @dependabot in https://github.com/dockstore/dockstore-cli/pull/139
- Bump actions/setup-java from 2 to 3.1.1 by @dependabot in https://github.com/dockstore/dockstore-cli/pull/140
- Bump actions/checkout from 2 to 3 by @dependabot in https://github.com/dockstore/dockstore-cli/pull/137
- Bump actions/cache from 1 to 3 by @dependabot in https://github.com/dockstore/dockstore-cli/pull/136
- see if this makes snyk happier by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/143
- Add sonarcloud scanning and bump POM versions by @david4096 in https://github.com/dockstore/dockstore-cli/pull/144
- trigger lgtm by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/145
- Add security policy by @david4096 in https://github.com/dockstore/dockstore-cli/pull/149
- Feature/2083/cli info call by @Richard-Hansen in https://github.com/dockstore/dockstore-cli/pull/148
- Bump actions/setup-java from 3.1.1 to 3.2.0 by @dependabot in https://github.com/dockstore/dockstore-cli/pull/147
- reissue gitlab tokens by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/153
- Remove residual mentions of
--tsvby @amarjandu in https://github.com/dockstore/dockstore-cli/pull/152 - Make test parameter files optional (#4763) by @amarjandu in https://github.com/dockstore/dockstore-cli/pull/155
- Use BOM versions of jackson core etc. by @wshands in https://github.com/dockstore/dockstore-cli/pull/165
- official mvnw by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/163
- Bump actions/setup-java from 3.2.0 to 3.4.1 by @dependabot in https://github.com/dockstore/dockstore-cli/pull/169
- update bom and generated files by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/170
- Remove stale configuration instructions by @amarjandu in https://github.com/dockstore/dockstore-cli/pull/154
- Feature/grab bag by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/173
- Feature/dock 2129/yaml file check by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/161
- Bump slackapi/slack-github-action from 1.18.0 to 1.19.0 by @dependabot in https://github.com/dockstore/dockstore-cli/pull/151
- Removed Liquibase Changeset Message from Output in CircleCI by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/174
- Restore ignored tests by @kathy-t in https://github.com/dockstore/dockstore-cli/pull/176
- Corrected missing space in error message by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/179
- Feature/seab 4525/bitbucket split by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/171
- Parallelism for CLI by @fhembroff in https://github.com/dockstore/dockstore-cli/pull/181
- Update, alphabetize AbstractEntryClient prints by @aofarrel in https://github.com/dockstore/dockstore-cli/pull/180
- update to new token format by @denis-yuen in https://github.com/dockstore/dockstore-cli/pull/182
New Contributors
- @amarjandu made their first contribution in https://github.com/dockstore/dockstore-cli/pull/152
- @fhembroff made their first contribution in https://github.com/dockstore/dockstore-cli/pull/161
- @kathy-t made their first contribution in https://github.com/dockstore/dockstore-cli/pull/176
- @aofarrel made their first contribution in https://github.com/dockstore/dockstore-cli/pull/180
Full Changelog: https://github.com/dockstore/dockstore-cli/compare/1.12.0...1.13.0
- Java
Published by denis-yuen over 3 years ago
dockstore-cli - 1.11.2
Security fixes Point to web service 1.11.10 CircleCI fix
- Java
Published by wshands about 4 years ago
dockstore-cli - 1.10.0
See https://github.com/dockstore/dockstore/releases/tag/1.10.0
- Java
Published by wshands over 5 years ago
dockstore-cli - 1.9.0
Change log for overall changes from 1.8.0 to 1.9.0
Highlighted new features include:
- better Beta WES support
- a large variety of security updates and bug fixes
Breaking changes
Major
None intended
Minor
- If upgrading the Dockstore CLI, it has changed and will now point to this repo to check for the latest or unstable versions
- Java
Published by wshands over 5 years ago
dockstore-cli - 1.9.0-beta.0
Beta changelog for overall changes from 1.8.0 to 1.9.0
Highlighted new features include:
- better Beta WES support
- a large variety of security updates and bug fixes
Breaking changes
Major
None intended
Minor
- If upgrading the Dockstore CLI, it has changed and will now point to this repo to check for the latest or unstable versions
- Java
Published by wshands over 5 years ago