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Recent Releases of neurostore

neurostore - v0.11.4

What's Changed

  • [MNT] update database dependency by @jdkent in https://github.com/neurostuff/neurostore/pull/1119

Full Changelog: https://github.com/neurostuff/neurostore/compare/v0.11.3...v0.11.4

- TypeScript
Published by jdkent 10 months ago

neurostore - v0.11.3

Summary

Primarily for upgrading the postgres database, but also some frontend updates

What's Changed

  • chore(deps-dev): bump @babel/runtime-corejs3 from 7.24.8 to 7.28.3 in /compose/neurosynth-frontend by @dependabot[bot] in https://github.com/neurostuff/neurostore/pull/1086
  • chore(deps-dev): bump tmp from 0.2.3 to 0.2.4 in /compose/neurosynth-frontend by @dependabot[bot] in https://github.com/neurostuff/neurostore/pull/1062
  • chore(deps-dev): bump tmp from 0.2.3 to 0.2.5 in /compose/neurosynth-frontend by @dependabot[bot] in https://github.com/neurostuff/neurostore/pull/1070
  • chore(deps): bump @types/d3-scale from 4.0.8 to 4.0.9 in /compose/neurosynth-frontend by @dependabot[bot] in https://github.com/neurostuff/neurostore/pull/1035
  • chore(deps-dev): bump @pkgr/core in /compose/neurosynth-frontend by @nicoalee in https://github.com/neurostuff/neurostore/pull/1106
  • chore(deps-dev): bump object-inspect from 1.13.2 to 1.13.4 in /compose/neurosynth-frontend by @dependabot[bot] in https://github.com/neurostuff/neurostore/pull/1029
  • chore(deps-dev): bump fast-glob from 3.3.2 to 3.3.3 in /compose/neurosynth-frontend by @dependabot[bot] in https://github.com/neurostuff/neurostore/pull/1026
  • chore(deps): bump @babel/runtime from 7.24.8 to 7.27.6 in /compose/neurosynth-frontend by @dependabot[bot] in https://github.com/neurostuff/neurostore/pull/973
  • chore(deps): bump @babel/helpers from 7.26.0 to 7.27.6 in /compose/neurosynth-frontend by @dependabot[bot] in https://github.com/neurostuff/neurostore/pull/974
  • chore(deps): bump form-data and @cypress/request in /compose/neurosynth-frontend by @dependabot[bot] in https://github.com/neurostuff/neurostore/pull/970
  • chore(deps): bump brace-expansion in /compose/neurosynth-frontend by @dependabot[bot] in https://github.com/neurostuff/neurostore/pull/1105
  • feat: change focus back to first group item after import by @nicoalee in https://github.com/neurostuff/neurostore/pull/1107
  • fix: guard against uninitialied study status list by @nicoalee in https://github.com/neurostuff/neurostore/pull/1108
  • chore(deps-dev): bump is-symbol from 1.0.4 to 1.1.1 in /compose/neurosynth-frontend by @dependabot[bot] in https://github.com/neurostuff/neurostore/pull/1109
  • chore(deps-dev): bump pathval from 2.0.0 to 2.0.1 in /compose/neurosynth-frontend by @dependabot[bot] in https://github.com/neurostuff/neurostore/pull/1110
  • chore(deps-dev): bump @sentry/cli from 2.50.2 to 2.52.0 in /compose/neurosynth-frontend by @dependabot[bot] in https://github.com/neurostuff/neurostore/pull/1111
  • chore(deps): bump @citation-js/core from 0.7.14 to 0.7.18 in /compose/neurosynth-frontend by @dependabot[bot] in https://github.com/neurostuff/neurostore/pull/1112
  • chore(deps-dev): bump loupe from 3.1.3 to 3.2.1 in /compose/neurosynth-frontend by @dependabot[bot] in https://github.com/neurostuff/neurostore/pull/1113
  • [MNT] upgrade postgres database by @jdkent in https://github.com/neurostuff/neurostore/pull/1095

Full Changelog: https://github.com/neurostuff/neurostore/compare/v0.11.2...v0.11.3

- TypeScript
Published by jdkent 10 months ago

neurostore - v0.11.2

What's Changed

  • [FIX] increase shm_memory by @jdkent in https://github.com/neurostuff/neurostore/pull/1103

Full Changelog: https://github.com/neurostuff/neurostore/compare/v0.11.1...v0.11.2

- TypeScript
Published by jdkent 10 months ago

neurostore - v0.11.1

Release Notes

CHANGES

  • [FIX] do not make the port accessible online and anger the IT gods (#1101) @jdkent
  • [FIX] fix deactivation schema (#1100) @jdkent

- TypeScript
Published by github-actions[bot] 10 months ago

neurostore - v0.11.0

What's Changed

  • feat: add additional text by @nicoalee in https://github.com/neurostuff/neurostore/pull/916
  • [FIX] temp fix CORS issue by @jdkent in https://github.com/neurostuff/neurostore/pull/918
  • feat: support nested text search by @nicoalee in https://github.com/neurostuff/neurostore/pull/917
  • maint: updated popup text by @nicoalee in https://github.com/neurostuff/neurostore/pull/924
  • [FIX] catch all operand endings by @jdkent in https://github.com/neurostuff/neurostore/pull/923
  • fix: show ai extracted data by @nicoalee in https://github.com/neurostuff/neurostore/pull/932
  • fix: added group name capitalization by @nicoalee in https://github.com/neurostuff/neurostore/pull/931
  • feat: removed docs icons from header by @nicoalee in https://github.com/neurostuff/neurostore/pull/930
  • feat: updated empty phase text by @nicoalee in https://github.com/neurostuff/neurostore/pull/929
  • Feat 854 update frontend search UI to use new informative error messages by @nicoalee in https://github.com/neurostuff/neurostore/pull/925
  • fix: remove resting state metadata by @nicoalee in https://github.com/neurostuff/neurostore/pull/940
  • feat: added rate limiting and UI fallback by @nicoalee in https://github.com/neurostuff/neurostore/pull/943
  • feat: added error boundary by @nicoalee in https://github.com/neurostuff/neurostore/pull/946
  • fix: stored state in react query by @nicoalee in https://github.com/neurostuff/neurostore/pull/947
  • fix: handled case where data is nested by @nicoalee in https://github.com/neurostuff/neurostore/pull/948
  • MAINT: add blog link by @nicoalee in https://github.com/neurostuff/neurostore/pull/949
  • tuneup for codespell + fix of new typo (not sure why was not detected by CI run :-/ ) by @yarikoptic in https://github.com/neurostuff/neurostore/pull/934
  • [MNT] update debian in dockerfiles by @jdkent in https://github.com/neurostuff/neurostore/pull/960
  • [FIX} empty analyses are not duplicates by default by @jdkent in https://github.com/neurostuff/neurostore/pull/959
  • Feat 950 update new curation info popup by @nicoalee in https://github.com/neurostuff/neurostore/pull/958
  • feat: table improvements by @nicoalee in https://github.com/neurostuff/neurostore/pull/963
  • feat: implemented download all curation button by @nicoalee in https://github.com/neurostuff/neurostore/pull/962
  • [REF] celery tasks by @jdkent in https://github.com/neurostuff/neurostore/pull/964
  • chore(deps): bump esbuild, vite, @vitejs/plugin-react and vitest in /compose/neurosynth-frontend by @dependabot[bot] in https://github.com/neurostuff/neurostore/pull/878
  • chore(deps): bump axios and start-server-and-test in /compose/neurosynth-frontend by @dependabot[bot] in https://github.com/neurostuff/neurostore/pull/879
  • Maint 961 sentry source maps by @nicoalee in https://github.com/neurostuff/neurostore/pull/972
  • chore(deps): bump vite from 6.2.0 to 6.3.5 in /compose/neurosynth-frontend by @dependabot[bot] in https://github.com/neurostuff/neurostore/pull/971
  • Maint 961 sentry source maps by @nicoalee in https://github.com/neurostuff/neurostore/pull/975
  • [FIX/MAINT] add experimental dispatch file by @jdkent in https://github.com/neurostuff/neurostore/pull/976
  • [REF] normalize python install by @jdkent in https://github.com/neurostuff/neurostore/pull/977
  • [ENH] add minyear and maxyear search params to base-studies by @jdkent in https://github.com/neurostuff/neurostore/pull/1003
  • [MNT] move the health checks into the compose files by @jdkent in https://github.com/neurostuff/neurostore/pull/996
  • [MNT] update openapi with new features by @jdkent in https://github.com/neurostuff/neurostore/pull/1004
  • [ENH] add deactivation column by @jdkent in https://github.com/neurostuff/neurostore/pull/1002
  • [MNT] add monthly no-cache build by @jdkent in https://github.com/neurostuff/neurostore/pull/994
  • [FIX] add a redirect to a homepage by @jdkent in https://github.com/neurostuff/neurostore/pull/992
  • [FIX] add aborts for improper sources by @jdkent in https://github.com/neurostuff/neurostore/pull/984
  • [ENH] add search for studies by particular coordinates by @jdkent in https://github.com/neurostuff/neurostore/pull/1011
  • [ENH] index x, y, and z by @jdkent in https://github.com/neurostuff/neurostore/pull/1012
  • [FIX] fix swagger errors and test to make sure it continues working by @jdkent in https://github.com/neurostuff/neurostore/pull/1013
  • [FIX] specify requirements for software by @jdkent in https://github.com/neurostuff/neurostore/pull/1014
  • [REF] remove a couple unused imports by @jdkent in https://github.com/neurostuff/neurostore/pull/1032
  • chore(deps): update webargs requirement from ~=7.0 to ~=8.7 in /compose/backend by @dependabot[bot] in https://github.com/neurostuff/neurostore/pull/1033
  • [ENH] index a couple columns to load projects faster. by @jdkent in https://github.com/neurostuff/neurostore/pull/1040
  • chore(deps): update authlib requirement from ~=0.15 to ~=1.6 in /store/backend by @dependabot[bot] in https://github.com/neurostuff/neurostore/pull/1037
  • chore(deps): update flask-migrate requirement from ~=2.5 to ~=4.1 in /store/backend by @dependabot[bot] in https://github.com/neurostuff/neurostore/pull/1034
  • [ENH] add cluster table metadata by @jdkent in https://github.com/neurostuff/neurostore/pull/1045
  • chore(deps): update gunicorn requirement from ~=22.0 to ~=23.0 in /store/backend by @dependabot[bot] in https://github.com/neurostuff/neurostore/pull/1052
  • chore(deps): update pytest requirement from ~=7.1 to ~=8.4 in /compose/backend by @dependabot[bot] in https://github.com/neurostuff/neurostore/pull/1051
  • chore(deps): update pytest requirement from ~=7.1 to ~=8.4 in /store/backend by @dependabot[bot] in https://github.com/neurostuff/neurostore/pull/1049
  • chore(deps): update pandas requirement from ~=1.2 to ~=2.3 in /store/backend by @dependabot[bot] in https://github.com/neurostuff/neurostore/pull/1050
  • chore(deps): update gunicorn requirement from ~=22.0 to ~=23.0 in /compose/backend by @dependabot[bot] in https://github.com/neurostuff/neurostore/pull/1055
  • Fix 966 state management bugs by @nicoalee in https://github.com/neurostuff/neurostore/pull/1048
  • fix: dont move to next phase if skip curation is cancelled by @nicoalee in https://github.com/neurostuff/neurostore/pull/1064
  • fix: handle duplicate properties in imported files by @nicoalee in https://github.com/neurostuff/neurostore/pull/1065
  • chore(deps): bump connexion[flask,swagger-ui,uvicorn] from 3.0.0 to 3.2.0 in /store/backend by @dependabot[bot] in https://github.com/neurostuff/neurostore/pull/1068
  • chore(deps): update flake8 requirement from ~=3.8 to ~=7.3 in /store/backend by @dependabot[bot] in https://github.com/neurostuff/neurostore/pull/1071
  • chore(deps): update flask requirement from ~=2.0 to ~=3.1 in /store/backend by @dependabot[bot] in https://github.com/neurostuff/neurostore/pull/1067
  • chore(deps): update ipython requirement from ~=7.19 to ~=8.18 in /store/backend by @dependabot[bot] in https://github.com/neurostuff/neurostore/pull/1069
  • feat: added support for errors occurring during debounce by @nicoalee in https://github.com/neurostuff/neurostore/pull/1077
  • [REF] change celery strategy by @jdkent in https://github.com/neurostuff/neurostore/pull/1078
  • [FIX] fix long urls by @jdkent in https://github.com/neurostuff/neurostore/pull/1085
  • chore(deps): update redis requirement from ~=4.4 to ~=6.4 in /compose/backend by @dependabot[bot] in https://github.com/neurostuff/neurostore/pull/1089
  • chore(deps): update ipython requirement from ~=7.19 to ~=8.18 in /compose/backend by @dependabot[bot] in https://github.com/neurostuff/neurostore/pull/1091
  • Enh 1056 improve performance of extractor pipeline query by @nicoalee in https://github.com/neurostuff/neurostore/pull/1066
  • 1084 allow selecting multiple ai categories from dropdown by @nicoalee in https://github.com/neurostuff/neurostore/pull/1092
  • [ENH] postgres monitor by @jdkent in https://github.com/neurostuff/neurostore/pull/1093
  • Enh 835 support curation hints by @nicoalee in https://github.com/neurostuff/neurostore/pull/1080
  • [ENH] add grafana by @jdkent in https://github.com/neurostuff/neurostore/pull/1094
  • enh: text changes and popup behavior change by @nicoalee in https://github.com/neurostuff/neurostore/pull/1099
  • feat: updated extraction dialog by @nicoalee in https://github.com/neurostuff/neurostore/pull/1098

Full Changelog: https://github.com/neurostuff/neurostore/compare/v0.10.0...v0.11.0

- TypeScript
Published by jdkent 10 months ago

neurostore - v0.10.0

What's Changed

AI-assisted Curation release!

  • MAINT: update node version by @nicoalee in https://github.com/neurostuff/neurostore/pull/846
  • MAINT: updated project linting by @nicoalee in https://github.com/neurostuff/neurostore/pull/847
  • ENH: Add custom tsquery from websearch function and related tests by @adelavega in https://github.com/neurostuff/neurostore/pull/838
  • [FIX] add func.to_tsquery by @jdkent in https://github.com/neurostuff/neurostore/pull/848
  • [FIX] tsquery: check for multiple operators by @jdkent in https://github.com/neurostuff/neurostore/pull/851
  • maint: updated banner with new tonwhall link by @nicoalee in https://github.com/neurostuff/neurostore/pull/855
  • Maint 853 update baner with new townhall link by @nicoalee in https://github.com/neurostuff/neurostore/pull/856
  • Maint 853 update baner with new townhall link by @nicoalee in https://github.com/neurostuff/neurostore/pull/857
  • maint: remove banner by @nicoalee in https://github.com/neurostuff/neurostore/pull/859
  • update vcrpy by @jdkent in https://github.com/neurostuff/neurostore/pull/862
  • [FIX] update bake definition by @jdkent in https://github.com/neurostuff/neurostore/pull/863
  • chore(deps): bump nanoid from 3.3.7 to 3.3.8 in /compose/neurosynth-frontend by @dependabot in https://github.com/neurostuff/neurostore/pull/860
  • wip: add feature tables by @jdkent in https://github.com/neurostuff/neurostore/pull/842
  • chore(deps-dev): bump cross-spawn from 7.0.3 to 7.0.6 in /compose/neurosynth-frontend by @dependabot in https://github.com/neurostuff/neurostore/pull/852
  • chore(deps): bump @sentry/browser and @sentry/react in /compose/neurosynth-frontend by @dependabot in https://github.com/neurostuff/neurostore/pull/841
  • chore(deps): bump vite from 5.4.10 to 5.4.14 in /compose/neurosynth-frontend by @dependabot in https://github.com/neurostuff/neurostore/pull/866
  • Feat 839 update visualizer with niivue by @nicoalee in https://github.com/neurostuff/neurostore/pull/861
  • fix: set the handsontable css version by @nicoalee in https://github.com/neurostuff/neurostore/pull/867
  • fix: reduced sampling rate by @nicoalee in https://github.com/neurostuff/neurostore/pull/870
  • feat: tell browser not to translate by @nicoalee in https://github.com/neurostuff/neurostore/pull/874
  • Fix 871 fix extraction popup after curation complete by @nicoalee in https://github.com/neurostuff/neurostore/pull/873
  • fix: added flag to optionally add extra point if empty by @nicoalee in https://github.com/neurostuff/neurostore/pull/868
  • [ENH] query feature by @jdkent in https://github.com/neurostuff/neurostore/pull/875
  • [FIX] flatten display of features and fix query list of lists by @jdkent in https://github.com/neurostuff/neurostore/pull/881
  • [FIX] update the submodules in staging by @jdkent in https://github.com/neurostuff/neurostore/pull/882
  • [ENH] sub param pipeline by @jdkent in https://github.com/neurostuff/neurostore/pull/883
  • [ENH] feature_flatten by @jdkent in https://github.com/neurostuff/neurostore/pull/884
  • [ENH] parameterize pipeline by @jdkent in https://github.com/neurostuff/neurostore/pull/885
  • [FIX] flatten logic to pipeline-study-results endpoint by @jdkent in https://github.com/neurostuff/neurostore/pull/886
  • [FIX] pipeline endpoints by @jdkent in https://github.com/neurostuff/neurostore/pull/887
  • [ENH] pipeline study result params by @jdkent in https://github.com/neurostuff/neurostore/pull/888
  • [FIX] filter newest results by @jdkent in https://github.com/neurostuff/neurostore/pull/889
  • [FIX] make pipeline search case insensitive by @jdkent in https://github.com/neurostuff/neurostore/pull/890
  • [ENH] make pagination optional for endpoints by @jdkent in https://github.com/neurostuff/neurostore/pull/891
  • [FIX] update openapi by @jdkent in https://github.com/neurostuff/neurostore/pull/892
  • [FIX] pubmed to tsquery by @jdkent in https://github.com/neurostuff/neurostore/pull/894
  • [FIX[ missing paginate function in pipeline-study-results by @jdkent in https://github.com/neurostuff/neurostore/pull/896
  • [ENH] add fields for fulltext and rank importance for search by @jdkent in https://github.com/neurostuff/neurostore/pull/895
  • [FIX] make pipelineresultqueries more efficient by @jdkent in https://github.com/neurostuff/neurostore/pull/897
  • [FIX] fix how the records are parsed when ranked by @jdkent in https://github.com/neurostuff/neurostore/pull/898
  • [FIX] sanitize basestudy inputs by @jdkent in https://github.com/neurostuff/neurostore/pull/899
  • fix: add property guard by @nicoalee in https://github.com/neurostuff/neurostore/pull/902
  • adjust feature ingestion from metadata update by @jdkent in https://github.com/neurostuff/neurostore/pull/905
  • [FIX] add more useful abort messages by @jdkent in https://github.com/neurostuff/neurostore/pull/908
  • 457 redo curation phase by @nicoalee in https://github.com/neurostuff/neurostore/pull/906
  • maint: info popup for curation by @nicoalee in https://github.com/neurostuff/neurostore/pull/911
  • [FIX] logic for ingestion by @jdkent in https://github.com/neurostuff/neurostore/pull/909
  • [FIX] feature errors by @jdkent in https://github.com/neurostuff/neurostore/pull/912

Full Changelog: https://github.com/neurostuff/neurostore/compare/v0.9.1...v0.10.0

- TypeScript
Published by jdkent about 1 year ago

neurostore - v0.9.1

What's Changed

  • FIX: build directory now dist by @jdkent in https://github.com/neurostuff/neurostore/pull/845
  • MAINT: add banner for town hall by @nicoalee in https://github.com/neurostuff/neurostore/pull/844

Full Changelog: https://github.com/neurostuff/neurostore/compare/v0.9.0...v0.9.1

- TypeScript
Published by jdkent over 1 year ago

neurostore - v0.9.0

Removing technical debt in the frontend.

What's Changed

  • Maint 782 migrate from cra to vite by @nicoalee in https://github.com/neurostuff/neurostore/pull/840

Full Changelog: https://github.com/neurostuff/neurostore/compare/v0.8.0...v0.9.0

- TypeScript
Published by jdkent over 1 year ago

neurostore - v0.8.0

What's Changed

  • [MAINT] add downbanner by @nicoalee in https://github.com/neurostuff/neurostore/pull/813
  • [MAINT] 812 add down banner by @nicoalee in https://github.com/neurostuff/neurostore/pull/814
  • [MAINT] chore(deps): bump webpack from 5.93.0 to 5.94.0 in /compose/neurosynth-frontend by @dependabot in https://github.com/neurostuff/neurostore/pull/811
  • [MAINT] chore(deps): bump fast-xml-parser from 4.4.0 to 4.4.1 in /compose/neurosynth-frontend by @dependabot in https://github.com/neurostuff/neurostore/pull/797
  • [ENH] ux extraction annoyances by @nicoalee in https://github.com/neurostuff/neurostore/pull/810
  • [MAINT] remove downbanner from page (but keep code for the future) by @jdkent in https://github.com/neurostuff/neurostore/pull/816
  • [ENH] 518 extraction phase can we make the list of studies more spreadsheet like by @nicoalee in https://github.com/neurostuff/neurostore/pull/820
  • [INFRA] add deployment script by @jdkent in https://github.com/neurostuff/neurostore/pull/822
  • [FIX] deploy script by @jdkent in https://github.com/neurostuff/neurostore/pull/823
  • [ENH] 518 extraction phase can we make the list of studies more spreadsheet like by @nicoalee in https://github.com/neurostuff/neurostore/pull/824
  • [ENH] 518 extraction phase can we make the list of studies more spreadsheet like by @nicoalee in https://github.com/neurostuff/neurostore/pull/825
  • [MAINT] chore(deps): bump body-parser and express in /compose/neurosynth-frontend by @dependabot in https://github.com/neurostuff/neurostore/pull/821
  • [MAINT] chore(deps): bump rollup from 2.79.1 to 2.79.2 in /compose/neurosynth-frontend by @dependabot in https://github.com/neurostuff/neurostore/pull/826
  • [MAINT] chore(deps): bump micromatch from 4.0.7 to 4.0.8 in /compose/neurosynth-frontend by @dependabot in https://github.com/neurostuff/neurostore/pull/815
  • [FIX] removed isRefetching by @nicoalee in https://github.com/neurostuff/neurostore/pull/828
  • [ENH] 709 Add progress bar to edit study page with the ability to switch between different lists by @nicoalee in https://github.com/neurostuff/neurostore/pull/832
  • [ENH] separated script tags by @nicoalee in https://github.com/neurostuff/neurostore/pull/836

Full Changelog: https://github.com/neurostuff/neurostore/compare/v0.7.1...v0.8.0

- TypeScript
Published by jdkent over 1 year ago

neurostore - v0.7.1

What's Changed

This one is a lot of bug fixes for platform stability, for making the sleuth upload feature, and we added the studyset download feature.

Fixes

  • [FIX] fix underline issue by @nicoalee in https://github.com/neurostuff/neurostore/pull/774
  • [FIX]: fixed bug where null studies would be ingested by @nicoalee in https://github.com/neurostuff/neurostore/pull/776
  • [FIX] keep numpy below 2.0 for now by @jdkent in https://github.com/neurostuff/neurostore/pull/779
  • [FIX] fix memory constraints for postgres by @jdkent in https://github.com/neurostuff/neurostore/pull/778
  • [FIX] websearch query by @jdkent in https://github.com/neurostuff/neurostore/pull/783
  • [FIX]: prevented pmid,pmcid,doi from being undefined during ingestion o… by @nicoalee in https://github.com/neurostuff/neurostore/pull/790
  • [FIX] duplicate analyses by @jdkent in https://github.com/neurostuff/neurostore/pull/809

Maintenance

  • [MAINT]: bump braces from 3.0.2 to 3.0.3 in /compose/neurosynth-frontend by @dependabot in https://github.com/neurostuff/neurostore/pull/773
  • [MAINT]: bump webpack-dev-middleware from 5.3.3 to 5.3.4 in /compose/neurosynth-frontend by @dependabot in https://github.com/neurostuff/neurostore/pull/765
  • [MAINT]: bump ejs from 3.1.8 to 3.1.10 in /compose/neurosynth-frontend by @dependabot in https://github.com/neurostuff/neurostore/pull/762
  • [MAINT]: bump follow-redirects from 1.15.0 to 1.15.6 in /compose/neurosynth-frontend by @dependabot in https://github.com/neurostuff/neurostore/pull/761
  • [MAINT]: bump @babel/traverse from 7.19.0 to 7.23.2 in /compose/neurosynth-frontend by @dependabot in https://github.com/neurostuff/neurostore/pull/604
  • [MAINT]: bump express from 4.18.1 to 4.19.2 in /compose/neurosynth-frontend by @dependabot in https://github.com/neurostuff/neurostore/pull/760
  • [MAINT]: bump jose from 4.14.4 to 4.15.5 in /compose/neurosynth-frontend by @dependabot in https://github.com/neurostuff/neurostore/pull/759
  • [MAINT]: bump tar and npm in /compose/neurosynth-frontend by @dependabot in https://github.com/neurostuff/neurostore/pull/763

Enhancements

  • [ENH]: fixed jumping issue by manually calculating row heights by @nicoalee in https://github.com/neurostuff/neurostore/pull/775
  • [ENH]: added terms and conditions page by @nicoalee in https://github.com/neurostuff/neurostore/pull/780
  • [ENH]: updated tabs and button styling by @nicoalee in https://github.com/neurostuff/neurostore/pull/791
  • [ENH]: 766 add feature to download list of included papers as csv by @nicoalee in https://github.com/neurostuff/neurostore/pull/802
  • [ENH]: added test to check by @nicoalee in https://github.com/neurostuff/neurostore/pull/803
  • [ENH]: update gtags by @nicoalee in https://github.com/neurostuff/neurostore/pull/805
  • [ENH] 593 google analytics not displaying page specific hits by @nicoalee in https://github.com/neurostuff/neurostore/pull/806

Full Changelog: https://github.com/neurostuff/neurostore/compare/v0.7.0...v0.7.1

- TypeScript
Published by jdkent almost 2 years ago

neurostore - v0.7.0

Release Notes

Major new features are the sleuth file import and revamping of the projects page. You can now upload sleuth files into our platform and have a meta-analysis created for you! The projects page also got a major update from the table interface to a more informative card interface.

What's Changed

  • [ENH] allow "post" to annotation-analysis endpoint by @jdkent in https://github.com/neurostuff/neurostore/pull/742
  • [FIX] match input study by either doi and/or pmid by @jdkent in https://github.com/neurostuff/neurostore/pull/744
  • 732 view only project mode by @nicoalee in https://github.com/neurostuff/neurostore/pull/740
  • use docker compose instead of docker-compose by @jdkent in https://github.com/neurostuff/neurostore/pull/747
  • fix projects endpoint by @jdkent in https://github.com/neurostuff/neurostore/pull/748
  • [ENH] add draft and check by @jdkent in https://github.com/neurostuff/neurostore/pull/749
  • 731 revamp projects page by @nicoalee in https://github.com/neurostuff/neurostore/pull/746
  • 198 add publicprivate button for user owned studiesdatasetsannotations by @nicoalee in https://github.com/neurostuff/neurostore/pull/751
  • feat: appzi updates by @nicoalee in https://github.com/neurostuff/neurostore/pull/753
  • feat: address updates by @nicoalee in https://github.com/neurostuff/neurostore/pull/755
  • [ENH] add metadata to analysis by @jdkent in https://github.com/neurostuff/neurostore/pull/756
  • gunicorn 22.0 by @jdkent in https://github.com/neurostuff/neurostore/pull/758
  • [FIX] add automatic order logic by @jdkent in https://github.com/neurostuff/neurostore/pull/768
  • [FIX] new user by @jdkent in https://github.com/neurostuff/neurostore/pull/769
  • [ENH] improve ingestion of studies by @jdkent in https://github.com/neurostuff/neurostore/pull/771
  • [FIX] ace ingestion when doi is null by @jdkent in https://github.com/neurostuff/neurostore/pull/772
  • 754 import from sleuth file by @nicoalee in https://github.com/neurostuff/neurostore/pull/770

Full Changelog: https://github.com/neurostuff/neurostore/compare/v0.6.0...v0.7.0

- TypeScript
Published by jdkent about 2 years ago

neurostore - v0.6.0

This upgrades the backend to sqlalchemy to 2.0, meaning several changes were made to make app compatible, cache invalidation was simplified and pmid and dois were made so they couldn't be empty strings (would be converted to None).

What's Changed

  • [ENH] add project meta analysis pagination by @jdkent in https://github.com/neurostuff/neurostore/pull/721
  • fix style in code by @jdkent in https://github.com/neurostuff/neurostore/pull/722
  • [ENH] data validation by @jdkent in https://github.com/neurostuff/neurostore/pull/723
  • [ENH] add pmcid by @jdkent in https://github.com/neurostuff/neurostore/pull/725
  • Enh/add pmcid by @jdkent in https://github.com/neurostuff/neurostore/pull/726
  • 660 ux add link to pmc if available and differentiate from pdf by @nicoalee in https://github.com/neurostuff/neurostore/pull/727
  • [ENH] DB improvements by @jdkent in https://github.com/neurostuff/neurostore/pull/728
  • [REF] Sqlalchemy20 by @jdkent in https://github.com/neurostuff/neurostore/pull/724
  • [MAINT] update to node20 by @jdkent in https://github.com/neurostuff/neurostore/pull/734
  • [ENH] use joinedload for many to one relationships in annotations by @jdkent in https://github.com/neurostuff/neurostore/pull/733
  • [ENH] make sure empty strings cannot be added to doi and pmid by @jdkent in https://github.com/neurostuff/neurostore/pull/735
  • [ENH] do not run unnecessary update on put by @jdkent in https://github.com/neurostuff/neurostore/pull/736
  • [ENH] add annotation-analysis endpoint by @jdkent in https://github.com/neurostuff/neurostore/pull/737
  • [FIX] assign user to annotation_analyses by @jdkent in https://github.com/neurostuff/neurostore/pull/738
  • [REF] annotation analyses do not create id column by @jdkent in https://github.com/neurostuff/neurostore/pull/739

Full Changelog: https://github.com/neurostuff/neurostore/compare/v0.5.0...v0.6.0

- TypeScript
Published by jdkent about 2 years ago

neurostore - v0.5.0

What's Changed

  • update nimare dependency by @jdkent in https://github.com/neurostuff/neurostore/pull/702
  • [FIX] do not include emails as names by @jdkent in https://github.com/neurostuff/neurostore/pull/701
  • ignore cache upload error by @jdkent in https://github.com/neurostuff/neurostore/pull/706
  • [ENH] add order to analysis by @jdkent in https://github.com/neurostuff/neurostore/pull/707
  • [FIX] random ordering of elements by @jdkent in https://github.com/neurostuff/neurostore/pull/708
  • 654 ux adding a new analysis puts it at top by @nicoalee in https://github.com/neurostuff/neurostore/pull/703
  • [MAINT] update openapi to master by @jdkent in https://github.com/neurostuff/neurostore/pull/713
  • 653 minor bug cloning study puts it at back of extraction list by @nicoalee in https://github.com/neurostuff/neurostore/pull/711
  • fix: added order and added test by @nicoalee in https://github.com/neurostuff/neurostore/pull/714
  • [FIX] cloning by @jdkent in https://github.com/neurostuff/neurostore/pull/715
  • feat: focus when analysis is created by @nicoalee in https://github.com/neurostuff/neurostore/pull/718

Full Changelog: https://github.com/neurostuff/neurostore/compare/v0.4.5...v0.5.0

- TypeScript
Published by jdkent over 2 years ago

neurostore - v0.4.5

What's Changed

  • use info true and flat false when getting a basestudy by @jdkent in https://github.com/neurostuff/neurostore/pull/696
  • Fix/switch study by @jdkent in https://github.com/neurostuff/neurostore/pull/697

Full Changelog: https://github.com/neurostuff/neurostore/compare/v0.4.4...v0.4.5

- TypeScript
Published by jdkent over 2 years ago

neurostore - v0.4.4

What's Changed

  • [FIX] public meta-analysis page by @jdkent in https://github.com/neurostuff/neurostore/pull/694
  • Revert "Add static file (#692)" by @jdkent in https://github.com/neurostuff/neurostore/pull/695

Full Changelog: https://github.com/neurostuff/neurostore/compare/v0.4.3...v0.4.4

- TypeScript
Published by jdkent over 2 years ago

neurostore - v0.4.3

What's Changed

  • [FIX] show meta analyses after creation by @jdkent in https://github.com/neurostuff/neurostore/pull/691
  • Add static file by @jdkent in https://github.com/neurostuff/neurostore/pull/692

Full Changelog: https://github.com/neurostuff/neurostore/compare/v0.4.2...v0.4.3

- TypeScript
Published by jdkent over 2 years ago

neurostore - v0.4.2

What's Changed

  • [FIX] show empty list when no ids by @jdkent in https://github.com/neurostuff/neurostore/pull/689

Full Changelog: https://github.com/neurostuff/neurostore/compare/v0.4.1...v0.4.2

- TypeScript
Published by jdkent over 2 years ago

neurostore - v0.4.1

What's Changed

  • [REF] refactor marshmallow schema logic by @jdkent in https://github.com/neurostuff/neurostore/pull/681
  • [ENH] add ability to update study upon cloning by @jdkent in https://github.com/neurostuff/neurostore/pull/682
  • [ENH] project info by @jdkent in https://github.com/neurostuff/neurostore/pull/683
  • [FIX] remove info fields by @jdkent in https://github.com/neurostuff/neurostore/pull/685
  • [FIX] set info to false when searching for base studies by @jdkent in https://github.com/neurostuff/neurostore/pull/686
  • [ENH] add ids param on meta-analysis endpoint by @jdkent in https://github.com/neurostuff/neurostore/pull/687
  • [REF] record neurovault ingestion by @jdkent in https://github.com/neurostuff/neurostore/pull/688

Some meta-analyses were not showing up on the frontend, #687 fixes the ability to display more meta-analyses for a particular project. Full Changelog: https://github.com/neurostuff/neurostore/compare/v0.4.0...v0.4.1

- TypeScript
Published by jdkent over 2 years ago

neurostore - v.0.4.0

Quality of life improvements for defaults and including more information

What's Changed

  • [FIX] hacky fix for FDRCorrector default by @jdkent in https://github.com/neurostuff/neurostore/pull/663
  • [FIX] textbox by @jdkent in https://github.com/neurostuff/neurostore/pull/664
  • [FIX] have a project specific chip by @jdkent in https://github.com/neurostuff/neurostore/pull/671
  • [FIX] add study info on extraction page by @jdkent in https://github.com/neurostuff/neurostore/pull/672
  • [FIX] do not prepend newline by @jdkent in https://github.com/neurostuff/neurostore/pull/673
  • add --n-cores to docker command by @jdkent in https://github.com/neurostuff/neurostore/pull/674
  • [ENH] Update nimare spec by @jdkent in https://github.com/neurostuff/neurostore/pull/675
  • [FIX] ingest more information than the basics when available by @jdkent in https://github.com/neurostuff/neurostore/pull/676

Full Changelog: https://github.com/neurostuff/neurostore/compare/v0.3.1...v0.4.0

- TypeScript
Published by jdkent over 2 years ago

neurostore - v0.3.1

What's Changed

  • feat: addressed meta-analysis bugs and improvements by @nicoalee in https://github.com/neurostuff/neurostore/pull/648
  • [FIX] add the docker-command by @jdkent in https://github.com/neurostuff/neurostore/pull/650

Full Changelog: https://github.com/neurostuff/neurostore/compare/v0.3.0...v0.3.1

- TypeScript
Published by jdkent over 2 years ago

neurostore - v0.3.0

What's Changed

  • fix bug to return boolean array by @jdkent in https://github.com/neurostuff/neurostore/pull/628
  • [FIX] allow test user and fix subset comparison by @jdkent in https://github.com/neurostuff/neurostore/pull/629
  • 563 support mkdachi2 workflow in frontend by @nicoalee in https://github.com/neurostuff/neurostore/pull/630
  • Fix/allow test user by @jdkent in https://github.com/neurostuff/neurostore/pull/631
  • feat: add unit tests and fix input to database studyset by @nicoalee in https://github.com/neurostuff/neurostore/pull/634
  • feat: fixed issues with incorrect specification for multi group estim… by @nicoalee in https://github.com/neurostuff/neurostore/pull/636
  • 621 misc feedback on search curate by @nicoalee in https://github.com/neurostuff/neurostore/pull/641
  • 622 misc extraction phase feedback by @nicoalee in https://github.com/neurostuff/neurostore/pull/643
  • [FIX] specification_condition update by @jdkent in https://github.com/neurostuff/neurostore/pull/644

Full Changelog: https://github.com/neurostuff/neurostore/compare/v0.2.2...v0.3.0

- TypeScript
Published by jdkent over 2 years ago

neurostore - v0.2.2 (November, 22, 2023)

What's Changed

  • 594 refresh the landing page by @nicoalee in https://github.com/neurostuff/neurostore/pull/603
  • [FIX] ignore changelog by @jdkent in https://github.com/neurostuff/neurostore/pull/605
  • [REF] update connexion to 3.0.0 by @jdkent in https://github.com/neurostuff/neurostore/pull/606
  • 567 make studies swappable by @nicoalee in https://github.com/neurostuff/neurostore/pull/608
  • fix cors issue by @jdkent in https://github.com/neurostuff/neurostore/pull/611
  • feat: fixed stylistic issues, added deleteproject button, fixed cypre… by @nicoalee in https://github.com/neurostuff/neurostore/pull/610
  • flip subpeak determination by @jdkent in https://github.com/neurostuff/neurostore/pull/615
  • fix spec updates by @jdkent in https://github.com/neurostuff/neurostore/pull/617
  • do not cascade with removal of base_study by @jdkent in https://github.com/neurostuff/neurostore/pull/620
  • Ref/speed up ingestion by @jdkent in https://github.com/neurostuff/neurostore/pull/616

Full Changelog: https://github.com/neurostuff/neurostore/compare/v0.2.1...v0.2.2

- TypeScript
Published by jdkent over 2 years ago

neurostore - v0.2.1 (October, 5, 2023)

Release Notes

Minor release, incorporate major bug fixes and recommendations from OHBM meeting.

CHANGES

  • [FIX] unique already creates an index, unique made a repetitive index (#600) @jdkent
  • [ENH] add base_study attribute (#599) @jdkent
  • [FIX] ignore string if doi/pmid/name string is empty (#598) @jdkent
  • [ENH] add conditions and weights to specification (#597) @jdkent
  • [ENH] add studyset-references endpoint (#596) @jdkent
  • chore(deps): bump @cypress/request and cypress in /compose/neurosynth-frontend (#595) @dependabot
  • 197 display user icon name (#591) @nicoalee
  • [ENH] add username and neurostore studyset script (#590) @jdkent
  • [FIX] nick feedback (#589) @jdkent
  • [ENH] add usernames to compose (#588) @jdkent
  • [MAINT] update openapi to main branch (#586) @jdkent
  • [ENH] bulk upload (#585) @jdkent
  • 565 update the advanced search input (#583) @nicoalee
  • [ENH] add username as resource attribute (#584) @jdkent
  • 561 switch api from studies to abstract studies (#582) @nicoalee
  • [FIX] id not showing up for info=true (#581) @jdkent
  • [ENH] using an iterator over a list comprehension should be faster (#578) @jdkent
  • [FIX] add datatype to basestudy (#577) @jdkent
  • [FIX] info query param behavior (#576) @jdkent
  • [ENH] make it quicker to filter studies by whether they have images/points. (#574) @jdkent
  • chore(deps): bump tough-cookie and @cypress/request in /compose/neurosynth-frontend (#569) @dependabot

- TypeScript
Published by github-actions[bot] over 2 years ago

neurostore - 0.2 post-ohbm release

What's Changed

  • feat: updated node and react scripts by @nicoalee in https://github.com/neurostuff/neurostore/pull/352
  • 307 refactor loading and http requests using react query by @nicoalee in https://github.com/neurostuff/neurostore/pull/362
  • feat: updated tests and removed old types by @nicoalee in https://github.com/neurostuff/neurostore/pull/365
  • feat: add create meta-analysis button by @nicoalee in https://github.com/neurostuff/neurostore/pull/366
  • feat: added redirect to created meta-analysis and unit tests by @nicoalee in https://github.com/neurostuff/neurostore/pull/367
  • 361 improve meta analysis summary page by @nicoalee in https://github.com/neurostuff/neurostore/pull/368
  • [TEST] skip tests if external service is not working by @jdkent in https://github.com/neurostuff/neurostore/pull/353
  • [ENH] add studyset link by @jdkent in https://github.com/neurostuff/neurostore/pull/364
  • 363 add ability to delete studies by @nicoalee in https://github.com/neurostuff/neurostore/pull/373
  • [FIX] data type both by @jdkent in https://github.com/neurostuff/neurostore/pull/375
  • [FIX] add httpx until schemathesis is fixed by @jdkent in https://github.com/neurostuff/neurostore/pull/378
  • 371 enhance study search view to add studysets that a study is part of with better study addremove functionality by @nicoalee in https://github.com/neurostuff/neurostore/pull/377
  • 356 add search for studysets by @nicoalee in https://github.com/neurostuff/neurostore/pull/379
  • [ENH] change workflow to incorporate data for frontend tests by @jdkent in https://github.com/neurostuff/neurostore/pull/372
  • [FIX] flask sqlalchemy by @jdkent in https://github.com/neurostuff/neurostore/pull/385
  • [MAINT] use tilde versioning on dependencies by @jdkent in https://github.com/neurostuff/neurostore/pull/387
  • [REF] neurosynth to compose by @jdkent in https://github.com/neurostuff/neurostore/pull/386
  • [ENH] add meta analysis provenance by @jdkent in https://github.com/neurostuff/neurostore/pull/389
  • [ENH] add project table by @jdkent in https://github.com/neurostuff/neurostore/pull/393
  • feat: added plausible by @nicoalee in https://github.com/neurostuff/neurostore/pull/392
  • [FIX] allow project to be null by @jdkent in https://github.com/neurostuff/neurostore/pull/395
  • [FIX] add annotations when analysis is added, not just study by @jdkent in https://github.com/neurostuff/neurostore/pull/397
  • Add/improve documentation by @jdkent in https://github.com/neurostuff/neurostore/pull/333
  • [ENH] Add upload process (celery) by @jdkent in https://github.com/neurostuff/neurostore/pull/332
  • [FIX] add new analysis annotation by @jdkent in https://github.com/neurostuff/neurostore/pull/402
  • [FIX] celery tests by @jdkent in https://github.com/neurostuff/neurostore/pull/405
  • [MAINT] delete compose packages by @jdkent in https://github.com/neurostuff/neurostore/pull/409
  • [FIX] add api in context of current app by @jdkent in https://github.com/neurostuff/neurostore/pull/410
  • [FIX] increase page size limit by @jdkent in https://github.com/neurostuff/neurostore/pull/414
  • [FIX] only debug when specified by @jdkent in https://github.com/neurostuff/neurostore/pull/413
  • [FIX] handled numeric input parse by @jdkent in https://github.com/neurostuff/neurostore/pull/416
  • [REF] list user args by @jdkent in https://github.com/neurostuff/neurostore/pull/415
  • [FIX] compose tests by @jdkent in https://github.com/neurostuff/neurostore/pull/418
  • [FIX] study unique query by @jdkent in https://github.com/neurostuff/neurostore/pull/417
  • [FIX] neurosynth ingestion by @jdkent in https://github.com/neurostuff/neurostore/pull/419
  • change to refactored openapi by @jdkent in https://github.com/neurostuff/neurostore/pull/420
  • [FIX] annotations not updating properly (again) by @jdkent in https://github.com/neurostuff/neurostore/pull/421
  • [FIX] POST meta-analysis with project by @jdkent in https://github.com/neurostuff/neurostore/pull/424
  • [ENH] upload neurostore table from results by @jdkent in https://github.com/neurostuff/neurostore/pull/422
  • [FIX] update openapi spec by @jdkent in https://github.com/neurostuff/neurostore/pull/427
  • [ENH] project public private by @jdkent in https://github.com/neurostuff/neurostore/pull/428
  • [FIX] create neurostore study when project is created by @jdkent in https://github.com/neurostuff/neurostore/pull/439
  • [FIX] compose bot by @jdkent in https://github.com/neurostuff/neurostore/pull/440
  • [FIX] junit tests by @jdkent in https://github.com/neurostuff/neurostore/pull/441
  • 381 restructure user experience with meta first approach by @nicoalee in https://github.com/neurostuff/neurostore/pull/399
  • [FIX] upload key name by @jdkent in https://github.com/neurostuff/neurostore/pull/442
  • chore(deps): bump @sideway/formula from 3.0.0 to 3.0.1 in /compose/neurosynth-frontend by @dependabot in https://github.com/neurostuff/neurostore/pull/404
  • chore(deps): bump json5 from 1.0.1 to 1.0.2 in /compose/neurosynth-frontend by @dependabot in https://github.com/neurostuff/neurostore/pull/398
  • [FIX] celery context by @jdkent in https://github.com/neurostuff/neurostore/pull/445
  • feat: prevent scroll from changing number input, better support for e… by @nicoalee in https://github.com/neurostuff/neurostore/pull/444
  • chore(deps): bump webpack from 5.74.0 to 5.83.1 in /compose/neurosynth-frontend by @dependabot in https://github.com/neurostuff/neurostore/pull/443
  • [FIX] schemas by @jdkent in https://github.com/neurostuff/neurostore/pull/446
  • [FIX] show diagnostic table at endpoint by @jdkent in https://github.com/neurostuff/neurostore/pull/447
  • chore(deps-dev): bump jsonwebtoken from 8.5.1 to 9.0.0 in /compose/neurosynth-frontend by @dependabot in https://github.com/neurostuff/neurostore/pull/396
  • chore(deps): bump decode-uri-component from 0.2.0 to 0.2.2 in /compose/neurosynth-frontend by @dependabot in https://github.com/neurostuff/neurostore/pull/394
  • chore(deps): bump loader-utils from 2.0.2 to 2.0.4 in /compose/neurosynth-frontend by @dependabot in https://github.com/neurostuff/neurostore/pull/391
  • feat: set the same order for all analyses - alphabetically by analysi… by @nicoalee in https://github.com/neurostuff/neurostore/pull/448
  • feat: add default studyset name and description by @nicoalee in https://github.com/neurostuff/neurostore/pull/454
  • feat: added more info for selecting a study by @nicoalee in https://github.com/neurostuff/neurostore/pull/456
  • feat: updated save button sitting below annotations by @nicoalee in https://github.com/neurostuff/neurostore/pull/460
  • 434 coordinate editing ability to add more than one row at a time by @nicoalee in https://github.com/neurostuff/neurostore/pull/463
  • feat: removed autofill name for meta analysis by @nicoalee in https://github.com/neurostuff/neurostore/pull/464
  • feat: made links clickable for study display by @nicoalee in https://github.com/neurostuff/neurostore/pull/466
  • [FIX] swagger ui fix with prance by @jdkent in https://github.com/neurostuff/neurostore/pull/467
  • [ENH] results endpoint improvements by @jdkent in https://github.com/neurostuff/neurostore/pull/462
  • [FIX] null results by @jdkent in https://github.com/neurostuff/neurostore/pull/468
  • [FIX] add new fields to point by @jdkent in https://github.com/neurostuff/neurostore/pull/469
  • [FIX] update openapi spec by @jdkent in https://github.com/neurostuff/neurostore/pull/470
  • [FIX] make value a float by @jdkent in https://github.com/neurostuff/neurostore/pull/471
  • 436 proposal for coordinate table organization by @nicoalee in https://github.com/neurostuff/neurostore/pull/472
  • [ENH] make the studies endpoint query faster by @jdkent in https://github.com/neurostuff/neurostore/pull/474
  • [ENH] add order to Points object by @jdkent in https://github.com/neurostuff/neurostore/pull/475
  • [FIX] add order and status by @jdkent in https://github.com/neurostuff/neurostore/pull/477
  • [FIX] try to catch more errors on analysis creation by @jdkent in https://github.com/neurostuff/neurostore/pull/478
  • [FIX] allow bot to add analysis to study owned by user by @jdkent in https://github.com/neurostuff/neurostore/pull/479
  • [FIX] neurostore analysis upload by @jdkent in https://github.com/neurostuff/neurostore/pull/481
  • [FIX] make analysis upload a task by @jdkent in https://github.com/neurostuff/neurostore/pull/482
  • [ENH] use outerjoins to display studies by @jdkent in https://github.com/neurostuff/neurostore/pull/483
  • 455 upload workflow post meta analysis run by @nicoalee in https://github.com/neurostuff/neurostore/pull/491
  • chore(deps): bump fast-xml-parser from 4.0.12 to 4.2.4 in /compose/neurosynth-frontend by @dependabot in https://github.com/neurostuff/neurostore/pull/484
  • feat: added semantic scholar to provide full text by @nicoalee in https://github.com/neurostuff/neurostore/pull/492
  • 488 make sample size a default metadata key when the user owns the study by @nicoalee in https://github.com/neurostuff/neurostore/pull/493
  • [ENH] abstract study by @jdkent in https://github.com/neurostuff/neurostore/pull/486
  • [ENH] switch missing names to base_studies by @jdkent in https://github.com/neurostuff/neurostore/pull/495
  • [ENH] Add sqltap by @jdkent in https://github.com/neurostuff/neurostore/pull/496
  • [FIX] fix the study search endpoint by @jdkent in https://github.com/neurostuff/neurostore/pull/497
  • [FIX] search capabilities by @jdkent in https://github.com/neurostuff/neurostore/pull/498
  • feat: finished user improvements from feedback by @nicoalee in https://github.com/neurostuff/neurostore/pull/499
  • feat: updated links for navbar docs and neurovault by @nicoalee in https://github.com/neurostuff/neurostore/pull/501
  • bugfix: save tags by @nicoalee in https://github.com/neurostuff/neurostore/pull/504
  • bugfix: handled non prisma case for exclusion selector popup by @nicoalee in https://github.com/neurostuff/neurostore/pull/506
  • [ENH] allow multiword queries by @jdkent in https://github.com/neurostuff/neurostore/pull/512
  • [ENH] add load_testing config by @jdkent in https://github.com/neurostuff/neurostore/pull/523
  • [ENH] misc performance by @jdkent in https://github.com/neurostuff/neurostore/pull/526
  • feat: added handling of expired tokens and handling of updates betwee… by @nicoalee in https://github.com/neurostuff/neurostore/pull/511
  • chore(deps): bump fast-xml-parser from 4.2.4 to 4.2.5 in /compose/neurosynth-frontend by @dependabot in https://github.com/neurostuff/neurostore/pull/524
  • chore(deps): bump semver from 6.3.0 to 6.3.1 in /compose/neurosynth-frontend by @dependabot in https://github.com/neurostuff/neurostore/pull/525
  • Enh/add caching by @jdkent in https://github.com/neurostuff/neurostore/pull/527
  • [FIX] bump gunicorn workers and change nested back to subquery by @jdkent in https://github.com/neurostuff/neurostore/pull/528
  • [FIX] nested query by @jdkent in https://github.com/neurostuff/neurostore/pull/529
  • [FIX] studyset nested by @jdkent in https://github.com/neurostuff/neurostore/pull/530
  • feat: removed mark all as complete button if all are complete by @nicoalee in https://github.com/neurostuff/neurostore/pull/531
  • fix: resolved bugs with out of sync curation, resolved issue with mis… by @nicoalee in https://github.com/neurostuff/neurostore/pull/533
  • [FIX] switch caching strategy to redis by @jdkent in https://github.com/neurostuff/neurostore/pull/532
  • feat: put specification details last when creating spec, improved int… by @nicoalee in https://github.com/neurostuff/neurostore/pull/534
  • [ENH] add info and flat query parameters by @jdkent in https://github.com/neurostuff/neurostore/pull/535
  • feat: add flat by @nicoalee in https://github.com/neurostuff/neurostore/pull/538
  • feat: set cloned study annotations to be included by default by @nicoalee in https://github.com/neurostuff/neurostore/pull/540
  • [ENH] ACE Ingestion by @jdkent in https://github.com/neurostuff/neurostore/pull/536
  • feat: remove alpha from site and add to labels by @nicoalee in https://github.com/neurostuff/neurostore/pull/555
  • [FIX] flake8 errors by @jdkent in https://github.com/neurostuff/neurostore/pull/568
  • feat: add google analytics by @nicoalee in https://github.com/neurostuff/neurostore/pull/560
  • feat: added neurosynth logo as favicon and change default text by @nicoalee in https://github.com/neurostuff/neurostore/pull/558
  • chore(deps): bump word-wrap from 1.2.3 to 1.2.4 in /compose/neurosynth-frontend by @dependabot in https://github.com/neurostuff/neurostore/pull/542
  • codespell: config, workflow + typos fixed by @yarikoptic in https://github.com/neurostuff/neurostore/pull/541
  • [MAINT] update openapi by @jdkent in https://github.com/neurostuff/neurostore/pull/571
  • [FIX/ENH] usernames by @jdkent in https://github.com/neurostuff/neurostore/pull/570
  • [FIX] ignore sample_text by @jdkent in https://github.com/neurostuff/neurostore/pull/572

New Contributors

  • @yarikoptic made their first contribution in https://github.com/neurostuff/neurostore/pull/541

Full Changelog: https://github.com/neurostuff/neurostore/compare/v0.1...v0.2

- TypeScript
Published by jdkent almost 3 years ago

neurostore - v0.1: First official release

What's Changed

This is the first versioned release of neurostore. The main items implemented are: - backend for storing coordinate/image based studies (neurostore.org) - backend for creating meta-analyses (compose.neurosynth.org) - frontend for interfacing with both backends This release represents a functional website for using previously ingested studies to create studysets, specify meta-analyses and run those meta-analyses on a google collab notebook.

  • [REF] Set up docker-compose, and other boilerplate by @adelavega in https://github.com/neurostuff/neurostore/pull/3
  • [REF] Move to Python 3.8, add tests by @adelavega in https://github.com/neurostuff/neurostore/pull/8
  • [REF] Drop Flask-Restful by @adelavega in https://github.com/neurostuff/neurostore/pull/9
  • [ENH] Remove initialization of database by @jdkent in https://github.com/neurostuff/neurostore/pull/16
  • [FIX] DockerTestConfig by @jdkent in https://github.com/neurostuff/neurostore/pull/15
  • [ENH] Add OpenAPI Specification by @jdkent in https://github.com/neurostuff/neurostore/pull/19
  • [ENH, FIX] Deploy behind nginx-proxy by @tyarkoni in https://github.com/neurostuff/neurostore/pull/24
  • [ENH] post/get datasets by @jdkent in https://github.com/neurostuff/neurostore/pull/29
  • [REF] use id's only instead of IRIs by @jdkent in https://github.com/neurostuff/neurostore/pull/26
  • [STY] run black and check style with flake8 by @jdkent in https://github.com/neurostuff/neurostore/pull/30
  • [ENH] add login by @jdkent in https://github.com/neurostuff/neurostore/pull/33
  • [ENH] Add cloning functionality by @jdkent in https://github.com/neurostuff/neurostore/pull/36
  • [FIX] neurovault ingestion by @jdkent in https://github.com/neurostuff/neurostore/pull/39
  • [ENH] Add Condition POST by @jdkent in https://github.com/neurostuff/neurostore/pull/40
  • [FIX] minor fixes by @jdkent in https://github.com/neurostuff/neurostore/pull/57
  • [FIX] reference original parent when cloning by @jdkent in https://github.com/neurostuff/neurostore/pull/58
  • [FIX] conform test cases to openapi standard by @jdkent in https://github.com/neurostuff/neurostore/pull/61
  • [REF] use Auth0 for authentication by @jdkent in https://github.com/neurostuff/neurostore/pull/67
  • [ENH] pagination by @jdkent in https://github.com/neurostuff/neurostore/pull/72
  • [FIX] urls in example_config by @jdkent in https://github.com/neurostuff/neurostore/pull/78
  • [FIX] cloning studies with images by @jdkent in https://github.com/neurostuff/neurostore/pull/80
  • [REF] add query parameters and filters to display only original studies by @jdkent in https://github.com/neurostuff/neurostore/pull/82
  • [ENH] New neurosynth format by @jdkent in https://github.com/neurostuff/neurostore/pull/86
  • [REF] merge the frontend with the backend by @nicoalee in https://github.com/neurostuff/neurostore/pull/88
  • [FIX] Do no include id in PUT requests by @jdkent in https://github.com/neurostuff/neurostore/pull/90
  • [REF] database changes by @jdkent in https://github.com/neurostuff/neurostore/pull/93
  • [ENH] Ingestion by @jdkent in https://github.com/neurostuff/neurostore/pull/95
  • [TST] add tests by @nicoalee in https://github.com/neurostuff/neurostore/pull/97
  • [FIX] public/private distinction by @jdkent in https://github.com/neurostuff/neurostore/pull/96
  • [MAINT] update spec by @jdkent in https://github.com/neurostuff/neurostore/pull/103
  • [MAINT] upgrade react materials to MUI V5 by @nicoalee in https://github.com/neurostuff/neurostore/pull/105
  • [ENH] add pagination by @nicoalee in https://github.com/neurostuff/neurostore/pull/106
  • [ENH] run frontend by @jdkent in https://github.com/neurostuff/neurostore/pull/108
  • [ENH] basic search filtering by @nicoalee in https://github.com/neurostuff/neurostore/pull/109
  • [ENH] edit enhancements by @nicoalee in https://github.com/neurostuff/neurostore/pull/114
  • [MNT] update staging by @jdkent in https://github.com/neurostuff/neurostore/pull/115
  • [FIX] add try_file in nginx by @jdkent in https://github.com/neurostuff/neurostore/pull/118
  • [TST] add frontend tests by @jdkent in https://github.com/neurostuff/neurostore/pull/116
  • [MAINT] updated gitignore with postgres py migration files and added e… by @nicoalee in https://github.com/neurostuff/neurostore/pull/120
  • [DOC] added build steps for dev and staging and updated readme by @nicoalee in https://github.com/neurostuff/neurostore/pull/123
  • [FIX] code review improvements by @nicoalee in https://github.com/neurostuff/neurostore/pull/125
  • [ENH] datasets & annotations by @jdkent in https://github.com/neurostuff/neurostore/pull/126
  • [REF] docker compose init procedure by @jdkent in https://github.com/neurostuff/neurostore/pull/135
  • [FIX] images add date by @jdkent in https://github.com/neurostuff/neurostore/pull/137
  • [REF] restructure code by @jdkent in https://github.com/neurostuff/neurostore/pull/139
  • [ENH] add analyses to study view by @nicoalee in https://github.com/neurostuff/neurostore/pull/143
  • [ENH] cloning a study will redirect to that study, log out bug fixed by @nicoalee in https://github.com/neurostuff/neurostore/pull/150
  • [FIX] map port 80 again by @jdkent in https://github.com/neurostuff/neurostore/pull/153
  • [ENH] study analyses editing by @nicoalee in https://github.com/neurostuff/neurostore/pull/156
  • [ENH] add delete operation to all endpoints by @jdkent in https://github.com/neurostuff/neurostore/pull/165
  • [ENH] implement datasets by @nicoalee in https://github.com/neurostuff/neurostore/pull/174
  • [FIX] add health command for postgres by @jdkent in https://github.com/neurostuff/neurostore/pull/177
  • [MAINT] update spec by @jdkent in https://github.com/neurostuff/neurostore/pull/179
  • [ENH] add export option to annotations by @jdkent in https://github.com/neurostuff/neurostore/pull/181
  • [MAINT] annotations/tests by @jdkent in https://github.com/neurostuff/neurostore/pull/188
  • [MAINT] change openapi branch to main by @jdkent in https://github.com/neurostuff/neurostore/pull/189
  • [MAINT] installation by @jdkent in https://github.com/neurostuff/neurostore/pull/190
  • [ENH] study year by @jdkent in https://github.com/neurostuff/neurostore/pull/192
  • [FIX] userview by @jdkent in https://github.com/neurostuff/neurostore/pull/199
  • [MAINT] add ipython to command flask shell by @jdkent in https://github.com/neurostuff/neurostore/pull/200
  • [FIX] public private by @jdkent in https://github.com/neurostuff/neurostore/pull/201
  • [ENH] Coordinate/Image search by @jdkent in https://github.com/neurostuff/neurostore/pull/202
  • [FIX] update annotations when adding study to dataset by @jdkent in https://github.com/neurostuff/neurostore/pull/208
  • [ENH] annotation key by @jdkent in https://github.com/neurostuff/neurostore/pull/212
  • [FEAT] Add Annotations Page by @jdkent in https://github.com/neurostuff/neurostore/pull/193
  • [ENH] add neurosynth2 by @jdkent in https://github.com/neurostuff/neurostore/pull/218
  • [FIX] maint by @jdkent in https://github.com/neurostuff/neurostore/pull/222
  • [FIX] spec conformance by @jdkent in https://github.com/neurostuff/neurostore/pull/223
  • [FIX] initialize annotation with empty notes by @jdkent in https://github.com/neurostuff/neurostore/pull/224
  • [ENH] added appzi feedback widget by @nicoalee in https://github.com/neurostuff/neurostore/pull/229
  • [REF] moved neurosynth-frontend to synth folder by @nicoalee in https://github.com/neurostuff/neurostore/pull/230
  • [FIX] removed notes property from payload by @nicoalee in https://github.com/neurostuff/neurostore/pull/233
  • [ENH] 234 add owner column to annotations by @nicoalee in https://github.com/neurostuff/neurostore/pull/240
  • [TST] point test by @jdkent in https://github.com/neurostuff/neurostore/pull/246
  • [ENH] make nested queries faster by @jdkent in https://github.com/neurostuff/neurostore/pull/239
  • [ENH] convert datasets to studysets by @jdkent in https://github.com/neurostuff/neurostore/pull/242
  • [FIX] missing change from dataset to studyset by @jdkent in https://github.com/neurostuff/neurostore/pull/250
  • [MAINT] update openapi spec by @jdkent in https://github.com/neurostuff/neurostore/pull/251
  • [Fix] entity by @jdkent in https://github.com/neurostuff/neurostore/pull/256
  • [FIX] change kwargs to metadata in schemas by @jdkent in https://github.com/neurostuff/neurostore/pull/257
  • [ENH] study editor: add/remove/update conditions by @jdkent in https://github.com/neurostuff/neurostore/pull/244
  • [REF] 258 integrate sdk into frontend and cicd pipeline by @nicoalee in https://github.com/neurostuff/neurostore/pull/260
  • [ENH] update spec by @jdkent in https://github.com/neurostuff/neurostore/pull/272
  • [ENH] ingest neurostore data by @jdkent in https://github.com/neurostuff/neurostore/pull/273
  • [FIX] neurosynth endpoint by @jdkent in https://github.com/neurostuff/neurostore/pull/274
  • [TST] schemathesis robustness by @jdkent in https://github.com/neurostuff/neurostore/pull/276
  • [FIX] add missing fields specification schema by @jdkent in https://github.com/neurostuff/neurostore/pull/278
  • [DOC] include documentation for the neurosynth spec by @jdkent in https://github.com/neurostuff/neurostore/pull/282
  • [ENH] add frontend config by @jdkent in https://github.com/neurostuff/neurostore/pull/249
  • [REF] Split nimads by @jdkent in https://github.com/neurostuff/neurostore/pull/287
  • [ENH] 113 edit enhancements involving addremoveupdate points by @nicoalee in https://github.com/neurostuff/neurostore/pull/290
  • [FIX] Remove unused function by @jdkent in https://github.com/neurostuff/neurostore/pull/289
  • [REF] prepare compose.neurosynth.org by @jdkent in https://github.com/neurostuff/neurostore/pull/294
  • [ENH] 292 rework landing page and improve performance by @nicoalee in https://github.com/neurostuff/neurostore/pull/297
  • [FIX] fix: resolved bug with ids set to same id by @nicoalee in https://github.com/neurostuff/neurostore/pull/302
  • [FIX] nginx GZIP javascript content by @jdkent in https://github.com/neurostuff/neurostore/pull/301
  • [ENH] 292 rework landing page and improve performance by @nicoalee in https://github.com/neurostuff/neurostore/pull/303
  • [DOCS] Mkdoc/neurosynth by @jdkent in https://github.com/neurostuff/neurostore/pull/304
  • [ENH] 292 rework landing page and improve performance by @nicoalee in https://github.com/neurostuff/neurostore/pull/306
  • [FIX] add explicit indices and remove subquery load from analysis-conditions by @jdkent in https://github.com/neurostuff/neurostore/pull/324
  • [ENH] feat: added add button to studypage and refactored code to move study set add/update logic to studysetpopupmenu component by @nicoalee in https://github.com/neurostuff/neurostore/pull/336
  • [ENH] create tour by @jdkent in https://github.com/neurostuff/neurostore/pull/334
  • [ENH] feat: made logo clickable by @nicoalee in https://github.com/neurostuff/neurostore/pull/337
  • [FIX] 312 handle situation when authenticated user tries to update studies studysets meta analyses that are not theirs by @nicoalee in https://github.com/neurostuff/neurostore/pull/338
  • [FIX] feat: allowed viewport to shrink more without turning into hamburger menu, moved drawer to right side by @nicoalee in https://github.com/neurostuff/neurostore/pull/339
  • [ENH] 309 add ability to delete study from studyset by @nicoalee in https://github.com/neurostuff/neurostore/pull/340
  • [ENH] feat: added studies link for empty studysets by @nicoalee in https://github.com/neurostuff/neurostore/pull/342
  • [ENH] feat: not found page implemented by @nicoalee in https://github.com/neurostuff/neurostore/pull/344
  • [ENH] 310 create protected routes for edit pages by @nicoalee in https://github.com/neurostuff/neurostore/pull/346
  • [ENH] 329 add warning are you sure prompt if the user tries to clone a cloned study by @nicoalee in https://github.com/neurostuff/neurostore/pull/347
  • [REF] use nimads repo by @jdkent in https://github.com/neurostuff/neurostore/pull/348
  • [ENH] 231 search improvements by @nicoalee in https://github.com/neurostuff/neurostore/pull/349
  • [ENH] add release drafter action and template by @jdkent in https://github.com/neurostuff/neurostore/pull/354

New Contributors

  • @adelavega made their first contribution in https://github.com/neurostuff/neurostore/pull/3
  • @tyarkoni made their first contribution in https://github.com/neurostuff/neurostore/pull/24
  • @nicoalee made their first contribution in https://github.com/neurostuff/neurostore/pull/88

Full Changelog: https://github.com/neurostuff/neurostore/commits/v0.1

- TypeScript
Published by jdkent almost 4 years ago