Data

Tools

Indexes

Applications

Experiments

Open Source Science

intro_to_dna_data_publishing

An introductory course for publishing DNA to GBIF, using the Darwin Core standard.

https://github.com/sformel/intro_to_dna_data_publishing

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (7.9%) to scientific vocabulary

Keywords

biodiversity-data dna gbif publishing
Last synced: 6 months ago · JSON representation ·

Repository

An introductory course for publishing DNA to GBIF, using the Darwin Core standard.

Basic Info
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Topics
biodiversity-data dna gbif publishing
Created 11 months ago · Last pushed 6 months ago
Metadata Files
Readme Contributing License Code of conduct Citation

README.md

Introduction to DNA Data Publishing

Still in development

Description

An introductory course for publishing DNA to GBIF, using the Darwin Core standard.Rendered lesson site: https://sformel.github.io/introtoDNAdatapublishing/

Question and comments can be voiced through the issues of the GitHub repo. You may also contact the GBIF North America Helpdesk at gbif.na.helpdesk@gmail.com.

credits/acknowledgements need to be added

make sure to credit those who have helped in the lesson’s development or inspired it, and/or any resources/templates that you have reused. You can also link to a separate AUTHORS.md file within the repository’s root directory to list all the people who contributed to the lesson content (if this list starts to become too large to include in the README itself)

citation TBD:

a convention is to include the citation information for your lesson in a separate CITATION file within the repository’s root directory and link to it from README.md so others can cite the use of the lesson in their own publications and media and it can also be automatically discovered by other applications. These CITATION files are discussed in more detail below. license - a short description of and a link to the lesson’s license typically contained in a separate LICENSE, LICENSE.txt or LICENSE.md file within the repository’s root directory. The lesson repository created from the Carpentries lesson template already contains a default LICENSE.md file, but you should modify this to more accurately describe how the lesson content can be re-used by others.

Owner

  • Name: Stephen Formel
  • Login: sformel
  • Kind: user

I'm a microbial ecologist by training, with a strong interest in improving data management and standards implementation for large, complex data and projects.

Citation (CITATION.cff) 

# This template CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to replace its contents
# with information about your lesson.
# Remember to update this file periodically,
# ensuring that the author list and other fields remain accurate.

cff-version: 1.2.0
title: Introduction to DNA Data Publishing
message: >-
  Please cite this lesson using the information in this file
  when you refer to it in publications, and/or if you
  re-use, adapt, or expand on the content in your own
  training material.
type: dataset
authors:
  - given-names: Stephen
    family-names: Formel
abstract: >-
  This lesson was developed by GBIF North America for an online workshop taught in April 2025
license: CC-BY-4.0

GitHub Events

Total
  • Member event: 1
  • Push event: 18
  • Create event: 4
Last Year
  • Member event: 1
  • Push event: 18
  • Create event: 4

Dependencies

.github/workflows/pr-close-signal.yaml actions
  • actions/upload-artifact v4 composite
.github/workflows/pr-comment.yaml actions
  • actions/checkout v4 composite
  • carpentries/actions/check-valid-pr main composite
  • carpentries/actions/comment-diff main composite
  • carpentries/actions/download-workflow-artifact main composite
.github/workflows/pr-post-remove-branch.yaml actions
  • carpentries/actions/download-workflow-artifact main composite
  • carpentries/actions/remove-branch main composite
.github/workflows/pr-preflight.yaml actions
  • carpentries/actions/check-valid-pr main composite
  • carpentries/actions/comment-diff main composite
.github/workflows/pr-receive.yaml actions
  • actions/checkout v4 composite
  • actions/upload-artifact v4 composite
  • carpentries/actions/check-valid-pr main composite
  • carpentries/actions/setup-lesson-deps main composite
  • carpentries/actions/setup-sandpaper main composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
.github/workflows/sandpaper-main.yaml actions
  • actions/checkout v4 composite
  • carpentries/actions/setup-lesson-deps main composite
  • carpentries/actions/setup-sandpaper main composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
.github/workflows/update-cache.yaml actions
  • actions/checkout v4 composite
  • carpentries/actions/check-valid-credentials main composite
  • carpentries/actions/update-lockfile main composite
  • carpentries/create-pull-request main composite
  • r-lib/actions/setup-r v2 composite
.github/workflows/update-workflows.yaml actions
  • actions/checkout v4 composite
  • carpentries/actions/check-valid-credentials main composite
  • carpentries/actions/update-workflows main composite
  • carpentries/create-pull-request main composite