TRANA - v0.3.1

What's Changed

• Bug for the short read workflow was fixed.
• Merge dev into main branch by @ryanjameskennedy in https://github.com/genomic-medicine-sweden/gms_16S/pull/60

Full Changelog: https://github.com/genomic-medicine-sweden/gms_16S/compare/v0.3.0...v0.3.1

- Nextflow
Published by fwa93 12 months ago

TRANA - v0.3.0

What's Changed

• Testing by @fwa93 in https://github.com/genomic-medicine-sweden/gms_16S/pull/41
• Master html creation with timestamps by @ryanjameskennedy in https://github.com/genomic-medicine-sweden/gms_16S/pull/43
• Allow custom barcodes by @mhkc in https://github.com/genomic-medicine-sweden/gms_16S/pull/48
• Emit qc files and add stubs by @ryanjameskennedy in https://github.com/genomic-medicine-sweden/gms_16S/pull/50
• Fix dependencies for merge barcodes samplesheet by @ryanjameskennedy in https://github.com/genomic-medicine-sweden/gms_16S/pull/52
• Fix dockerfile context by @ryanjameskennedy in https://github.com/genomic-medicine-sweden/gms_16S/pull/54
• Updates to dev before merge by @ryanjameskennedy in https://github.com/genomic-medicine-sweden/gms_16S/pull/55
• Merge dev branch into main by @ryanjameskennedy in https://github.com/genomic-medicine-sweden/gms_16S/pull/53

New Contributors

• @ryanjameskennedy made their first contribution in https://github.com/genomic-medicine-sweden/gms_16S/pull/43
• @mhkc made their first contribution in https://github.com/genomic-medicine-sweden/gms_16S/pull/48

Full Changelog: https://github.com/genomic-medicine-sweden/gms_16S/compare/v0.2.0...v0.3.0

- Nextflow
Published by fwa93 12 months ago

TRANA - v0.2.0

What's Changed

• Add continuous integration by @samuell in https://github.com/genomic-medicine-sweden/gms_16S/pull/25
• 26 add support for illumina by @AnderssonOlivia in https://github.com/genomic-medicine-sweden/gms_16S/pull/39

New Contributors

• @AnderssonOlivia made their first contribution in https://github.com/genomic-medicine-sweden/gms_16S/pull/39

Full Changelog: https://github.com/genomic-medicine-sweden/gms_16S/compare/v0.1.0...v0.2.0

- Nextflow
Published by fwa93 12 months ago

TRANA - v0.1.0

What's Changed

[v0.1.0]

Initial release. There are still some bugs and things that could be added (see issues). First stable version will start as V1.x.x. Things may change in this release.

Added

• Support for Nanopore reads. Reads can be in barcode directories or premerged into samplespecific fastq-files.
• Krona
• emu
• FiltLong
• Porchop_abi
• NanoPlot
• Multiqc
• fastqc
• Adaptation to nextflow

• All tools are containerised with singularity

• added link by @fwa93 in https://github.com/genomic-medicine-sweden/gms_16S/pull/1

• Create CODEOWNERS by @pbiology in https://github.com/genomic-medicine-sweden/gms_16S/pull/16

• Fix some typos and formatting in README by @samuell in https://github.com/genomic-medicine-sweden/gms_16S/pull/18

New Contributors

• @fwa93 made their first contribution in https://github.com/genomic-medicine-sweden/gms_16S/pull/1
• @pbiology made their first contribution in https://github.com/genomic-medicine-sweden/gms_16S/pull/16
• @samuell made their first contribution in https://github.com/genomic-medicine-sweden/gms_16S/pull/18

Full Changelog: https://github.com/genomic-medicine-sweden/gms_16S/commits/v0.1.0

- Nextflow
Published by fwa93 over 1 year ago