longreadsum - v1.5.0

• Added QC flags
• Added per-read GC content histograms
• Added % read length vs. base modification probability scatter plot
• Added base modification probability histogram

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Published by jonperdomo about 1 year ago

longreadsum - v1.4.0

• Add POD5 support
• Add support for BAM files with base modifications
• Add TIN score support for RNASeq files
• Add RRMS BAM file support
• VBZ plugin is included in the conda environment
• Fix errors with guppy and dorado FAST5 files
• Fix read length histogram bin labels
• Update the README documentation

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Published by jonperdomo over 1 year ago

longreadsum - v1.3.1

• Add RRMS support by generating QC for both accepted and rejected reads given the CSV with this information.
• Fix base quality histogram integer overflow error with large integers
• Add option to plot specific read IDs for FAST5 signal QC

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Published by jonperdomo over 2 years ago

longreadsum - v1.3.0

• Reduce dependencies.
• All plots are in dynamic HTML.
• Fix fastq file, NM tag, and log file errors

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Published by jonperdomo over 2 years ago

longreadsum - v1.2.0

Fix memory leaks in the bam file threading implementation. Reformat the package for bioconda submission.

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Published by jonperdomo almost 3 years ago

longreadsum - v1.0.1

Add FAST5 VBZ compression support Update HTML report styles

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Published by jonperdomo about 3 years ago

longreadsum - v1.0.0

Refactored the project structure. Implemented automated build and unit testing. Added support for FAST5 files. Added a FAST5 signal data QC option. Added a Docker installation option. Fix N50 implementations for FASTQ, BAM, and seqtxt files.

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Published by jonperdomo over 3 years ago

longreadsum - v0.1.0

Initial release with sample input data for testing

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Published by jonperdomo over 3 years ago