metagenomics-workshop-workbench
Testing Workbench transition of the Lab Metagenomics Workshop Overview site
https://github.com/tobyhodges/metagenomics-workshop-workbench
Science Score: 77.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 10 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
✓Committers with academic emails
4 of 31 committers (12.9%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (6.2%) to scientific vocabulary
Keywords from Contributors
english
lesson
stable
metagenomics
life-sciences
carpentries-lab
carpentries
carpentries-incubator
beta
jekyll
Last synced: 10 months ago
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Repository
Testing Workbench transition of the Lab Metagenomics Workshop Overview site
Basic Info
- Host: GitHub
- Owner: tobyhodges
- License: other
- Language: TeX
- Default Branch: main
- Homepage: https://tobyhodges.github.io/metagenomics-workshop-workbench/
- Size: 77.1 MB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Created about 2 years ago
· Last pushed over 1 year ago
Metadata Files
Readme
Contributing
License
Code of conduct
Citation
Authors
Zenodo
README.md
Metagenomics Workshop
Overview page of the Metagenomics Workshop that comprises four lessons:
- Project Organization and Management for Metagenomics
- Introduction to the Command Line for Metagenomics
- Introduction to R for Metagenomics
- Data Processing and Visualization for Metagenomics
Code of Conduct
All participants should agree to abide by The Carpentries Code of Conduct.
Maintainer(s)
Current maintainers of this lesson are
- Nelly Selem Mojica
- Claudia Zirion Martinez
- Aaron Espinosa Jaime
- Jose Abel Lovaco Flores
- Diego Garfias Gallegos
Authors
The Metagenomics workshop overview is authored and maintained by the community.
A list of contributors to the lesson can be found in AUTHORS
Citation
Please cite this repository as:
Claudia Zirión Martínez; Diego Garfias Gallegos; Tania Vanessa Arellano Fernández; Aarón Espinosa Jaime; Edder D Bustos Díaz; José Abel Lovaco Flores; Luis Gerardo Tejero Gómez; J Abraham Avelar Rivas; Nelly Sélem (March , 2023) A Data Carpentry- Style Metagenomics Workshop https://doi.org/10.5281/zenodo.7713368
Please cite our manuscript 
Acknowledgments
We thank UNAM for funding proyecto PAPIME "Desarrollo de material didáctico de Bioinformática con énfasis en metagenómica para las modalidades presencial y virtual"
Owner
- Name: Toby Hodges
- Login: tobyhodges
- Kind: user
- Location: Heidelberg, Germany
- Company: @carpentries
- Website: https://tbyhdgs.info
- Twitter: tbyhdgs
- Repositories: 25
- Profile: https://github.com/tobyhodges
Director of Curriculum @carpentries
Citation (CITATION)
Please cite as: Nelly Sélem Mojica; Diego Garfias Gallegos; Claudia Zirión Martínez; Jesús Abraham Avelar Rivas; Aaron Jaime Espinosa; Abel Lovaco Flores; Tania Vanessa Arellano Fernandez (2022, Jan). Metagenomics for Software Carpentry lesson, Jan 2022. Zenodo. https://doi.org/10.5281/zenodo.4285900
GitHub Events
Total
- Push event: 11
Last Year
- Push event: 11
Committers
Last synced: 12 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Nelly Sélem | n****5@h****m | 86 |
| Claudia Zirión Martínez | 7****n | 82 |
| Erin Becker | e****r@g****m | 71 |
| Tracy Teal | t****t@i****g | 40 |
| J. Abel Lovaco | 6****4 | 16 |
| Bob Freeman PhD | r****n@h****u | 13 |
| maneesha sane | m****e@g****m | 13 |
| François Michonneau | f****u@g****m | 12 |
| JasonJWilliamsNY | J****Y@g****m | 7 |
| Toby Hodges | t****s@g****m | 7 |
| aaronejaime | 4****e | 4 |
| Taylor Reiter | t****r@g****m | 4 |
| Camila Silva | 8****5 | 4 |
| AbrahamAvelar | j****r@g****m | 3 |
| murraycadzow | m****w@o****z | 2 |
| Sarah Stevens | s****2@w****u | 2 |
| Fotis E. Psomopoulos | f****m@g****m | 2 |
| Bianca Peterson | b****7@g****m | 2 |
| Andres Espindola | e****o@o****u | 1 |
| Muhammad Zohaib Anwar | m****r@e****k | 1 |
| lugetego | l****o@h****m | 1 |
| annajiat | a****t@g****m | 1 |
| Zhian N. Kamvar | z****r@g****m | 1 |
| Vanessaarfer | 5****r | 1 |
| Sarah Brown | s****n@b****u | 1 |
| Paula Andrea Martinez | o****0 | 1 |
| Matthew Kweskin | m****n | 1 |
| Mark Fernandes | m****1@g****m | 1 |
| Hilmar Lapp | h****p@d****t | 1 |
| Clara | c****e@g****m | 1 |
| and 1 more... | ||
Committer Domains (Top 20 + Academic)
drycafe.net: 1
brown.edu: 1
envs.au.dk: 1
ostatemail.okstate.edu: 1
wisc.edu: 1
otago.ac.nz: 1
hbs.edu: 1
idyll.org: 1
Issues and Pull Requests
Last synced: 12 months ago
All Time
- Total issues: 0
- Total pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Total issue authors: 0
- Total pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
Pull Request Authors
Top Labels
Issue Labels
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Dependencies
.github/workflows/pr-close-signal.yaml
actions
- actions/upload-artifact v3 composite
.github/workflows/pr-comment.yaml
actions
- actions/checkout v3 composite
- carpentries/actions/check-valid-pr main composite
- carpentries/actions/comment-diff main composite
- carpentries/actions/download-workflow-artifact main composite
.github/workflows/pr-post-remove-branch.yaml
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- carpentries/actions/download-workflow-artifact main composite
- carpentries/actions/remove-branch main composite
.github/workflows/pr-preflight.yaml
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- carpentries/actions/check-valid-pr main composite
- carpentries/actions/comment-diff main composite
.github/workflows/pr-receive.yaml
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- actions/upload-artifact v3 composite
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- carpentries/actions/setup-lesson-deps main composite
- carpentries/actions/setup-sandpaper main composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
.github/workflows/sandpaper-main.yaml
actions
- actions/checkout v3 composite
- carpentries/actions/setup-lesson-deps main composite
- carpentries/actions/setup-sandpaper main composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
.github/workflows/update-cache.yaml
actions
- actions/checkout v3 composite
- carpentries/actions/check-valid-credentials main composite
- carpentries/actions/update-lockfile main composite
- carpentries/create-pull-request main composite
- r-lib/actions/setup-r v2 composite
.github/workflows/update-workflows.yaml
actions
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- carpentries/actions/check-valid-credentials main composite
- carpentries/actions/update-workflows main composite
- carpentries/create-pull-request main composite