align-cli - Version 0.4.1

• Added --full-number to display numbers with more precision
• Added --formula <number> to search for molecular formulas with a mass that rounds to the given target
• Highlights potential N-glycan sites in the alignment
• Added --display-fasta to easily export IMGT
• Updated search result display
• Added more control for precise parameters for the alignment
• Display annotations for annotated fasta files
• Added ability to generate annotations based on --domain
• Updated to rustyms 0.10.0

(Recreation of the version with a fixed action script, hopefully)

- Rust
Published by douweschulte 10 months ago

align-cli - Version 0.4.1

• Added --full-number to display numbers with more precision
• Added --formula <number> to search for molecular formulas with a mass that rounds to the given target
• Highlights potential N-glycan sites in the alignment
• Added --display-fasta to easily export IMGT
• Updated search result display
• Added more control for precise parameters for the alignment
• Display annotations for annotated fasta files
• Added ability to generate annotations based on --domain
• Updated to rustyms 0.10.0

- Rust
Published by douweschulte 11 months ago

align-cli - Version 0.4.0

• Added IMGT support, align against a --specific-gene, or the whole database --imgt which can be filtered useing --chains,--genes,--species, and --allele.
• Added domain align inspired by DomainGapAlign --domain
• Added support for more align types with the either global alignment
• Added the options to specify the used scoring matrix
• Updated the displayed results to look nicer and more cohesive
• Updated to rustyms 0.8.0

- Rust
Published by douweschulte about 2 years ago

align-cli - Version 0.3.0

• Added options to search for a peptide in a full fasta database
• Added option to look at the details of a single modification
  • Shows mass, composition, name, and other details when available
  • For mass modifications (eg +58.01 ) it searches for all known modifications within the given tolerance
• Improved display for single sequences
  • Nicer display
  • Shows isobaric sequences, with control over the tolerance, fixed & variable modifications
• Updated rustyms to 0.6.1

- Rust
Published by douweschulte over 2 years ago

align-cli - v0.2.5

• Updated rustyms dependency
• Updated alignment rendering for better display of adjoining special sets

- Rust
Published by douweschulte over 2 years ago

align-cli - v0.2.4

Bug fixes in rustyms for the mass alignment

- Rust
Published by douweschulte over 2 years ago

align-cli - v0.2.3

• Updated rustyms to v0.3.0 allowing for far better support of Pro Forma sequences
• Small changes for mass based alignment output

- Rust
Published by douweschulte over 2 years ago

align-cli - v0.2.2

Better error reporting and fixed formatting issue with mass difference

- Rust
Published by douweschulte over 2 years ago

align-cli - v0.2.1

Updated rustyms dependency to allow for more support of the Pro Forma specification.

- Rust
Published by douweschulte over 2 years ago

align-cli - v0.2.0

• Polished output of mass alignment

- Rust
Published by douweschulte over 2 years ago

align-cli - v0.1.0

Initial release

- Rust
Published by douweschulte over 2 years ago