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fenicsx-pulse

Next generation cardiac mechanics solver based on FEniCSx

https://github.com/finsberg/fenicsx-pulse

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (10.8%) to scientific vocabulary

Keywords

cardiac fenicsx mechanics
Last synced: 6 months ago · JSON representation ·

Repository

Next generation cardiac mechanics solver based on FEniCSx

Basic Info
Statistics
  • Stars: 7
  • Watchers: 1
  • Forks: 3
  • Open Issues: 8
  • Releases: 6
Topics
cardiac fenicsx mechanics
Created about 3 years ago · Last pushed 6 months ago
Metadata Files
Readme Contributing License Citation

README.md

_

MIT PyPI version Test package Pre-commit Deploy static content to Pages Code style: black Create and publish a Docker image Coverage

fenicsx-pulse

fenicsx-pulse is a cardiac mechanics solver based on FEniCSx. It is a successor of pulse which is a cardiac mechanics solver based on FEniCS.

  • Documentation: https://finsberg.github.io/fenicsx-pulse/
  • Source code: https://github.com/finsberg/fenicsx-pulse

Install

You can install the library with pip python3 -m pip install fenicsx-pulse or with conda conda install -c conda-forge fenicsx-pulse Note that installing with pip requires FEniCSx already installed

We also provide a pre-built docker image with FEniCSx and fenicsx_pulse installed. You pull this image using the command docker pull ghcr.io/finsberg/fenicsx-pulse:v0.4.0

Getting started

Checkout out the demos in the documentation

Contributing

See https://finsberg.github.io/fenicsx-pulse/CONTRIBUTING.html

Owner

  • Name: Henrik Finsberg
  • Login: finsberg
  • Kind: user
  • Location: Oslo, Norway
  • Company: Simula Research Laboratoy

Senior Research Engineer working with Scientific Computing and Computational Physiology

Citation (CITATION.cff) 

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: "Finsberg"
  given-names: "Henrik"
  orcid: "https://orcid.org/0000-0003-3766-2393"
title: "fenicsx_pulse"
version: 2022.1.3
doi: 10.21105/joss.01539
license: MIT
date-released: 2022-12-19
url: "https://github.com/finsberg/fenicsx-pulse"

GitHub Events

Total
  • Create event: 19
  • Commit comment event: 5
  • Release event: 1
  • Watch event: 1
  • Delete event: 8
  • Push event: 96
  • Pull request event: 58
  • Fork event: 1
Last Year
  • Create event: 19
  • Commit comment event: 5
  • Release event: 1
  • Watch event: 1
  • Delete event: 8
  • Push event: 96
  • Pull request event: 58
  • Fork event: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 3
  • Total pull requests: 80
  • Average time to close issues: about 11 hours
  • Average time to close pull requests: 3 days
  • Total issue authors: 2
  • Total pull request authors: 3
  • Average comments per issue: 0.33
  • Average comments per pull request: 0.01
  • Merged pull requests: 70
  • Bot issues: 0
  • Bot pull requests: 33
Past Year
  • Issues: 2
  • Pull requests: 37
  • Average time to close issues: N/A
  • Average time to close pull requests: 6 days
  • Issue authors: 1
  • Pull request authors: 3
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.0
  • Merged pull requests: 29
  • Bot issues: 0
  • Bot pull requests: 25
View more stats
Top Authors
Issue Authors
  • finsberg (2)
  • EzequielS2 (1)
Pull Request Authors
  • finsberg (76)
  • pre-commit-ci[bot] (49)
  • dependabot[bot] (4)
Top Labels
Issue Labels
documentation (1)
Pull Request Labels
dependencies (4) github_actions (2)

Dependencies

.github/workflows/build_docs.yml actions
  • actions/checkout v3 composite
  • actions/configure-pages v2 composite
  • actions/deploy-pages v1 composite
  • actions/upload-pages-artifact v1 composite
.github/workflows/docker-image.yml actions
  • actions/checkout v3 composite
  • docker/build-push-action v3 composite
  • docker/login-action v2 composite
  • docker/metadata-action v4 composite
  • docker/setup-buildx-action v2 composite
  • docker/setup-qemu-action v2 composite
.github/workflows/pre-commit.yml actions
  • actions/checkout v3 composite
.github/workflows/pypi.yml actions
  • actions/checkout v2 composite
  • actions/setup-python v4 composite
  • pypa/gh-action-pypi-publish master composite
.github/workflows/test_package_coverage.yml actions
  • actions/checkout v3 composite
Dockerfile docker
  • ghcr.io/finsberg/pulsex v0.1.0 build
docker/Dockerfile docker
  • ghcr.io/fenics/dolfinx/dolfinx nightly build
pyproject.toml pypi
  • fenics-dolfinx *