pyglotaran-extras - v0.7.3

pyglotaran-extras 0.7.3 Release Notes

What's Changed

✨ Features

• ✨ Add configuration for plot functions (#288)
• ✨ Add plot_pfid plot function (#283)

🩹 Bug fixes

• 🩹 Fix very slow data/residual plots (#239)
• 🩹 Fix deprecation warning for using xr.Dataset.dim (#267)
• 🩹🚇 Adapt to changed outputs in pyglotaran-examples GHA (#273)
• 🩹 Fix incompatibility of plotdataand_fits with matplotlib>=3.8 (#275)

🚧 Maintenance

• 🗑️ Clean up codesee GA workflow (#254)
• 🚇🧹 Switch back to GeekyEggo/delete-artifact (#261)
• 🚇 Add CODECOV_TOKEN (#268)
• 🚇🧹 Move requirements_min.txt into .github folder to avoid being picked up by dependabot (#286)

Full Changelog: https://github.com/glotaran/pyglotaran-extras/compare/v0.7.2...v0.7.3

- Python
Published by jsnel over 1 year ago

pyglotaran-extras - v0.7.2

This is a supplementary package for pyglotaran with convenience plotting functions.

This minor release is specifically intended to cater to the needs for some new (complex) case studies in the form of so called STAR protocol papers, for which the accompanying repositories can be found here: - pyglotaran STAR protocol for analysis of transient absorption spectra of photosystem I - pyglotaran STAR protocol for analysis of time-resolved fluorescence spectra of photosystem I

For use with the pyglotaran package, pyglotaran version v0.7.2 or later is recommended.

Can be installed as a python package from PyPI via pip, from Anaconda's conda-forge using conda, or directly from sources on github.

What's Changed

• 🧰👌 Switch tooling to ruff by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/197
• 🩹 Fix crash when plotting spectral model result by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/200
• 🧰 Use black-pre-commit-mirror for 2x speedup by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/205
• 🧰🚀 Use ruff for formatting by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/214
• 👌 Use weighted residual instead of residual plots if present by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/216
• 👌 Add color map arguments to plotdataoverview by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/217
• 👌 Add dascycler and svdcycler to plot collection functions by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/218
• 👌 Add usesvdnumber switch to use SV number instead of index as label by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/219
• 🩹 Fix use_svd_number not being passed on to plot_sv_data in plot_data_overview by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/221
• 📦 Use trusted publisher workflow for publishing to PyPI by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/222

Full Changelog: https://github.com/glotaran/pyglotaran-extras/compare/v0.7.1...v0.7.2

- Python
Published by s-weigand about 2 years ago

pyglotaran-extras - v0.7.1

This is a supplementary package for pyglotaran with convenience plotting functions.

This minor release is specifically intended to resolve some issues coming out of some of the (complex) case studies in the pyglotaran-publications repositories, specifically: - pyglotaran 2023 release paper SI - 2023-05 van_Stokkum et al publication

For use with the pyglotaran package, pyglotaran version v0.6.0 or later is required.

Can be installed as a python package from PyPI via pip, from Anaconda's conda-forge using conda, or directly from sources on github.

What's Changed

Bugfixes

• 🩹 Fix crashes of plotdoas and plotcoherent_artifact for non dispersive IRF by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/173
• 🩹 Fix crashes plot_coherent_artifact with none dispersive IRF by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/182

Improvements

• 👌 Add minor ticks to linlog plots by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/183
• ✨ Add addsubplotlabels function by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/181

Other minor changes

• ⬆️📚 Update readme by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/165
• 🚧📦 Remove upper python version limit by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/174

Full Changelog: https://github.com/glotaran/pyglotaran-extras/compare/v0.7.0...v0.7.1

- Python
Published by jsnel over 2 years ago

pyglotaran-extras - v0.7.0

Accompanies the v0.7.0 release of pyglotaran

This is a supplementary package for pyglotaran with convenience plotting functions.

For use with the pyglotaran package, pyglotaran version v0.6.0 or later is required.

Can be installed as a python package from PyPI via pip, from Anaconda's conda-forge using conda, or directly from sources on github.

What's Changed

• 👌🚇 Change integration tests to use self managed examples action by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/91
• ✨ Add plot function for guidance spectra by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/92
• 👌 Fix typo in internal function name by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/94
• 👌 Improve typing by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/96
• 🔧 Add basic codecov config by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/97
• ✨ Add IRF dispersion center plotting by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/95
• 👌 Shift time axis by IRF location by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/99
• 🩹📚 Fix missing channel flag in conda install guide by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/108
• 👌 Add option to deactivate data/residual plotting in overview plots by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/118
• ✨ Add coherent artifact plot functionality by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/123
• ✨ Add a-matrix inspection function by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/124
• ✨ Add showzeroline option to plotoverview and plotfitted_traces by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/128
• 🩹 Fix SVD vector labels always starting from zero by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/133
• 👌 Make result input for plotcoherentartifact more generic by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/134
• ✨ Add plot_doas function that only plots DOAS related information by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/135
• ✨ Shift irf derivatives in plotcoherentartifact by irf position by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/136
• ⬆️🛡️ Combined Snyk updates by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/145
• 👌 Convert plot style Enums to StrEnums for ease of use by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/144
• 🩹 Fix heading in showamatrixes for multiple a-matrixes per dataset by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/148
• 👌 Add legendformatstring argument to plot_doas by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/150
• 👌 Make plotdataoverview able to plot single trace data by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/137
• 👌 Improve plotdoas default legendformat_string by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/151
• 🩹⌨️ Fix figsize typing by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/152
• 🩹📚 Fix search in docs by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/157

Full Changelog: https://github.com/glotaran/pyglotaran-extras/compare/v0.6.0...v0.7.0

- Python
Published by jsnel almost 3 years ago

pyglotaran-extras - v0.6.0

Accompanies the v0.6.0 release of pyglotaran

This is a supplementary package for pyglotaran with convenience plotting functions. For use with the pyglotaran package, version v0.5.1 or later is recommended.

Can be installed as a python package from PyPI via pip, from Anaconda using conda or directly from sources

What's Changed

• 👌 Made adding a cycler to and axis opt out by using None by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/58
• 🩹 Fix autogenerated title for concentration plot by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/63
• 👌 Improve SVD plotting by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/64
• 📚👌 Improve readme by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/69
• 🔧🚇 Add sourcery-ai config by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/71
• 🔧🩹 Remove github section in sourcery config due to bug in sourcery-ai by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/72
• 👌 Improve legend placement in plotdataoverview by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/77

Full Changelog: https://github.com/glotaran/pyglotaran-extras/compare/v0.5.0...v0.6.0

- Python
Published by jsnel over 3 years ago

pyglotaran-extras - v0.5.0

Code name: "What You Leave Behind"

This is a supplementary package for pyglotaran with convenience plotting functions. For use with the pyglotaran package, version 0.3.0 or later (pyglotaran v0.5.0 or later is recommended).

Can be installed as a python package from PyPI or from sources.

What's Changed

• 🩹 Fix IRF location selection for IRFs with multiple components by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/32
• ♻️ Export 'setupcasestudy' from 'pyglotaran_extras.io' by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/34
• ✨ Add plotfittedtraces function by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/39
• 🚧🚀🚇♻️ Shape up for release by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/40
• 🩹 Fix 'setupcasestudy' when used with 'resultsfolderroot' by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/41
• 🩹 Fix broken 'plotdataoverview' by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/42
• 🩹 Handle missing SVD attributes by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/45
• 🔧 Raise tooling strictness by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/54
• 🚀 Prepare 0.5.0 release by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/55
• 📚 Update installation instruction for release on PyPI by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/56
• 🩹🚇 Fix release pipeline not running on push tag by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/57

Full Changelog: https://github.com/glotaran/pyglotaran-extras/compare/v0.4.1...v0.5.0

- Python
Published by s-weigand about 4 years ago

pyglotaran-extras - v0.5.0rc1

pyglotaran-extras 0.5.0rc1 Release Notes

Code name: "What You Leave Behind (part 1)"

This is a pre-release of the software for the purpose of a live demonstration at the Vrije Universiteit on the 25th of October 2021.

This is a supplementary package for pyglotaran with convenience plotting functions. For use with the pyglotaran package, version 0.5.0rc1 or later.

Can be installed as a python package from pypi or from sources, it is not yet available via the conda package manager.

0.5.0 (2021-10-25)

What's Changed

• 🩹 Fix irf location selection for irfs with multiple components by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/32
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/glotaran/pyglotaran-extras/pull/28
• Bump pyglotaran from 0.4.0 to 0.4.1 by @dependabot in https://github.com/glotaran/pyglotaran-extras/pull/31
• ♻️ Export 'setupcasestudy' from 'pyglotaran_extras.io' by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/34
• Bump matplotlib from 3.4.2 to 3.4.3 by @dependabot in https://github.com/glotaran/pyglotaran-extras/pull/29
• ✨ Add plotfittedtraces function by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/39
• Bump actions/github-script from 4 to 5 by @dependabot in https://github.com/glotaran/pyglotaran-extras/pull/37
• Bump pywin32 from 300 to 302 by @dependabot in https://github.com/glotaran/pyglotaran-extras/pull/38
• 🚧🚀🚇♻️ Shape up for release by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/40
• 🩹 Fix 'setupcasestudy' when used with 'resultsfolderroot' by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/41
• 🩹 Fix broken 'plotdataoverview' by @s-weigand in https://github.com/glotaran/pyglotaran-extras/pull/42

Full Changelog: https://github.com/glotaran/pyglotaran-extras/compare/v0.4.1...v0.5.0rc1

- Python
Published by jsnel over 4 years ago

pyglotaran-extras - v0.4.1

pyglotaran-extras 0.4.1 Release Notes

Code name: "GTA Save Game"

Supplementary package for pyglotaran with (example) plotting code. For use with the pyglotaran package, version 0.4.x

Can be installed as a python package from sources only; it is not (yet) released on pypi or conda.

This is the last release fully compatible with pyglotaran v0.3-v0.4, subsequent versions may (only) target later releases.

- Python
Published by jsnel over 4 years ago

pyglotaran-extras - v0.3.3

Supplementary package for pyglotaran with (example) plotting code. For use with the pyglotaran package, version 0.3.x Can be installed as a python package from sources, but is not released on pypi or conda.

This is the last release fully compatible with pyglotaran v0.3, subsequent released may (only) target later releases.

- Python
Published by jsnel over 4 years ago

pyglotaran-extras - v0.3.0

Supplementary package for pyglotaran with (example) plotting code. For use with the pyglotaran package, version 0.3.0. Can be installed as a python package from sources, but is not released on pypi or conda.

- Python
Published by jsnel about 5 years ago