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mps-motion

Library for tracking motion in cardiac mps data

https://github.com/computationalphysiology/mps_motion

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 3 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: iop.org, zenodo.org
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (8.3%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

Library for tracking motion in cardiac mps data

Basic Info
Statistics
  • Stars: 1
  • Watchers: 3
  • Forks: 0
  • Open Issues: 1
  • Releases: 2
Created about 5 years ago · Last pushed 6 months ago
Metadata Files
Readme Contributing License Citation

README.md

CI Publish documentation PyPI version Code style: black DOI

MPS Motion

Library for tracking motion in cardiac mps data

  • Source code: https://github.com/ComputationalPhysiology/mps_motion
  • Documentation: https://computationalphysiology.github.io/mps_motion

Installation

See: https://computationalphysiology.github.io/mps_motion/install.html

Getting started

See https://computationalphysiology.github.io/mps_motion/quickstart.html

Authors

  • Henrik Finsberg henriknf@simula.no

Citing

If you use this library in your research, please cite the following paper @article{10.1088/2057-1976/ad7268, author={Finsberg, Henrik Nicolay Topnes and Charwat, Verena and Healy, Kevin E and Wall, Samuel}, title={Automatic motion estimation with applications to hiPSC-CMs}, journal={Biomedical Physics & Engineering Express}, url={http://iopscience.iop.org/article/10.1088/2057-1976/ad7268}, year={2024}, }

License

MIT

Owner

  • Name: Computational Physiology at Simula Research Laboratory
  • Login: ComputationalPhysiology
  • Kind: organization
  • Location: Fornebu, Norway

GitHub organization for the computational physiology department at Simula Research Laboratory

Citation (CITATION.cff) 

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: "Finsberg"
  given-names: "Henrik"
  orcid: "https://orcid.org/0000-0003-3766-2393"
title: "MPS motion - Library for tracking motion in cardiac mps data"
version: "0.2.9"
date-released: 2022-12-09
doi: 10.5281/zenodo.13381633
url: "https://github.com/ComputationalPhysiology/mps_motion"
preferred-citation:
  type: article
  doi: "10.1088/2057-1976/ad7268"
  journal: "Biomedical Physics & Engineering Express"
  title: "Automatic motion estimation with applications to hiPSC-CMs"
  year: 2024
  authors:
  - family-names: "Fisberg"
    given-names: "Henrik"
    orcid: "https://orcid.org/0000-0003-3766-2393"
  - family-names: "Charwat"
    given-names: "Verena"
  - family-names: "Healy"
    given-names: "Kevin E."
  - family-names: "Wall"
    given-names: "Samuel T."

GitHub Events

Total
  • Delete event: 2
  • Push event: 67
  • Pull request event: 40
  • Create event: 8
Last Year
  • Delete event: 2
  • Push event: 67
  • Pull request event: 40
  • Create event: 8

Committers

Last synced: almost 3 years ago

All Time
  • Total Commits: 267
  • Total Committers: 2
  • Avg Commits per committer: 133.5
  • Development Distribution Score (DDS): 0.206
Top Committers
Name Email Commits
Henrik Finsberg h****f@s****o 212
Henrik Finsberg h****g@h****m 55
Committer Domains (Top 20 + Academic)
simula.no: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 0
  • Total pull requests: 54
  • Average time to close issues: N/A
  • Average time to close pull requests: 5 days
  • Total issue authors: 0
  • Total pull request authors: 3
  • Average comments per issue: 0
  • Average comments per pull request: 0.02
  • Merged pull requests: 50
  • Bot issues: 0
  • Bot pull requests: 32
Past Year
  • Issues: 0
  • Pull requests: 19
  • Average time to close issues: N/A
  • Average time to close pull requests: 10 days
  • Issue authors: 0
  • Pull request authors: 3
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 15
  • Bot issues: 0
  • Bot pull requests: 17
View more stats
Top Authors
Issue Authors
Pull Request Authors
  • pre-commit-ci[bot] (39)
  • finsberg (23)
  • dependabot[bot] (17)
Top Labels
Issue Labels
Pull Request Labels
dependencies (17) github_actions (1)

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 147 last-month
  • Total dependent packages: 1
  • Total dependent repositories: 0
  • Total versions: 37
  • Total maintainers: 1
pypi.org: mps-motion

Library for tracking motion in cardiac mps data

  • Versions: 37
  • Dependent Packages: 1
  • Dependent Repositories: 0
  • Downloads: 147 Last month
Rankings
Dependent packages count: 2.9%
Downloads: 13.9%
Average: 23.4%
Forks count: 30.5%
Dependent repos count: 30.6%
Stargazers count: 39.1%
Maintainers (1)
finsberg
Last synced: 6 months ago

Dependencies

.github/workflows/build_docs.yml actions
  • actions/checkout v3 composite
  • actions/configure-pages v2 composite
  • actions/deploy-pages v1 composite
  • actions/setup-python v4 composite
  • actions/upload-pages-artifact v1 composite
.github/workflows/docker-image.yml actions
  • actions/checkout v3 composite
  • docker/build-push-action v3 composite
  • docker/login-action v2 composite
  • docker/metadata-action v4 composite
  • docker/setup-buildx-action v2 composite
  • docker/setup-qemu-action v2 composite
.github/workflows/main.yml actions
  • actions/checkout v2 composite
  • actions/setup-python v4 composite
  • codecov/codecov-action v3 composite
.github/workflows/pypi.yml actions
  • actions/checkout v3 composite
  • actions/setup-python v4 composite
  • pypa/gh-action-pypi-publish master composite
Dockerfile docker
  • ghcr.io/computationalphysiology/mps_motion v0.3.8 build
docker/Dockerfile docker
  • ubuntu 22.04 build
setup.py pypi