nireports
The NiPreps' Reporting and Visualization system - report templates and "reportlets"
Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
2 of 17 committers (11.8%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (12.2%) to scientific vocabulary
Keywords
brain-imaging
neuroimaging
nipreps
qc
quality-control
reporting
visualization
Keywords from Contributors
quality-reporter
mri
bids
dataflow-programming
dataflow
brainweb
fmri-preprocessing
fmri
workflow-engine
closember
Last synced: 6 months ago
·
JSON representation
Repository
The NiPreps' Reporting and Visualization system - report templates and "reportlets"
Basic Info
- Host: GitHub
- Owner: nipreps
- License: apache-2.0
- Language: Python
- Default Branch: main
- Homepage: https://nireports.readthedocs.io
- Size: 93.8 MB
Statistics
- Stars: 10
- Watchers: 4
- Forks: 20
- Open Issues: 21
- Releases: 14
Topics
brain-imaging
neuroimaging
nipreps
qc
quality-control
reporting
visualization
Created almost 4 years ago
· Last pushed 6 months ago
Metadata Files
Readme
Changelog
Contributing
License
Zenodo
README.rst
.. image:: https://img.shields.io/pypi/v/nireports.svg :target: https://pypi.python.org/pypi/nireports/ :alt: Latest Version .. image:: https://img.shields.io/badge/License-Apache_2.0-blue.svg :target: https://github.com/nipreps/eddymotion/blob/main/LICENSE :alt: License .. image:: https://readthedocs.org/projects/nireports/badge/?version=latest :target: https://nireports.readthedocs.io/en/latest/?badge=latest :alt: Documentation Status .. image:: https://circleci.com/gh/nipreps/nireports/tree/main.svg?style=shield :target: https://circleci.com/gh/nipreps/nireports/tree/main :alt: Testing .. image:: https://github.com/nipreps/nireports/actions/workflows/build_test_deploy.yml/badge.svg :target: https://github.com/nipreps/nireports/actions/workflows/build_test_deploy.yml :alt: Build-Test-Deploy .. image:: https://codecov.io/gh/nipreps/nireports/branch/main/graph/badge.svg?token=OPH6D32GWN :target: https://codecov.io/gh/nipreps/nireports *NiReports*: the *NiPreps*' reporting and visualization tools ============================================================= *NiReports* contains the two main components of the *visual reporting system* of *NiPreps*: * **Reportlets**: visualizations for assessing the quality of a particular processing step within the neuroimaging pipeline. Typically, reportlets show brain mosaics perhaps with contours and/or segmentations. They can be *dynamic* and flicker between two different *states* to help assess the accuracy of image registrations. However, the reportlets are not limited to brain mosaics, and can contain correlation plots, BOLD fMRI *carpetplots*, etc. * **Assembler**: end-user *NiPreps* write out reportlets to a predetermined folder, which is then queried by the assembler using *PyBIDS*. The assembler follows a *report specification* in YAML format, which states the query to find specific reportlets and their corresponding metadata and text annotations. As a result, one HTML file with a concatenation of reportlets is produced.
Owner
- Name: NeuroImaging PREProcessing toolS
- Login: nipreps
- Kind: organization
- Email: nipreps@gmail.com
- Website: https://nipreps.org/
- Repositories: 46
- Profile: https://github.com/nipreps
GitHub Events
Total
- Create event: 17
- Release event: 3
- Issues event: 10
- Watch event: 3
- Delete event: 6
- Issue comment event: 128
- Push event: 48
- Pull request review event: 80
- Pull request review comment event: 60
- Pull request event: 95
- Fork event: 1
Last Year
- Create event: 17
- Release event: 3
- Issues event: 10
- Watch event: 3
- Delete event: 6
- Issue comment event: 128
- Push event: 48
- Pull request review event: 80
- Pull request review comment event: 60
- Pull request event: 95
- Fork event: 1
Committers
Last synced: 9 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Oscar Esteban | c****e@o****s | 207 |
| Christopher J. Markiewicz | e****s@g****m | 122 |
| Jon Haitz Legarreta Gorroño | j****a@g****m | 34 |
| Zvi Baratz | z****z@g****m | 23 |
| Dimitri Papadopoulos | 3****s | 21 |
| Mathias Goncalves | g****s@g****m | 17 |
| Teresa Gomez | 4****g | 15 |
| Taylor Salo | t****6@f****u | 13 |
| Elodie Savary | e****y@o****m | 13 |
| Krzysztof J. Gorgolewski | k****i@g****m | 11 |
| NiPreps Bot | n****s@g****m | 11 |
| dependabot[bot] | 4****] | 7 |
| Ross Blair | r****2@s****u | 6 |
| Shoshana Berleant | s****r | 4 |
| Céline Provins | c****s@u****h | 3 |
| Ariel Rokem | a****m@g****m | 1 |
| mnoergaard | m****d@n****k | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 54
- Total pull requests: 179
- Average time to close issues: 5 months
- Average time to close pull requests: 14 days
- Total issue authors: 11
- Total pull request authors: 14
- Average comments per issue: 1.43
- Average comments per pull request: 1.93
- Merged pull requests: 138
- Bot issues: 0
- Bot pull requests: 14
Past Year
- Issues: 7
- Pull requests: 94
- Average time to close issues: 4 days
- Average time to close pull requests: 5 days
- Issue authors: 3
- Pull request authors: 7
- Average comments per issue: 0.0
- Average comments per pull request: 2.02
- Merged pull requests: 67
- Bot issues: 0
- Bot pull requests: 8
Top Authors
Issue Authors
- oesteban (24)
- ZviBaratz (12)
- jhlegarreta (4)
- celprov (3)
- tsalo (3)
- eilidhmacnicol (2)
- effigies (2)
- mnoergaard (2)
- mgxd (1)
- dkp (1)
Pull Request Authors
- jhlegarreta (69)
- effigies (39)
- oesteban (32)
- DimitriPapadopoulos (19)
- dependabot[bot] (18)
- ZviBaratz (12)
- tsalo (11)
- celprov (5)
- esavary (3)
- rwblair (3)
- mgxd (3)
- teresamg (2)
- mnoergaard (2)
- arokem (1)
Top Labels
Issue Labels
enhancement (22)
bug (14)
good first issue (3)
impact: high (3)
documentation (3)
effort: high (2)
effort: medium (2)
impact: medium (1)
visual reports system (1)
help wanted (1)
effort: low (1)
Pull Request Labels
dependencies (18)
github_actions (4)
documentation (3)
bug (2)
enhancement (1)
Packages
- Total packages: 1
-
Total downloads:
- pypi 23,974 last-month
- Total dependent packages: 5
- Total dependent repositories: 1
- Total versions: 19
- Total maintainers: 3
pypi.org: nireports
NiReports - The Visual Report System (VRS) of NiPreps
- Homepage: https://github.com/nipreps/nireports
- Documentation: https://nireports.readthedocs.io/
- License: Apache Software License
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Latest release: 25.2.0
published 9 months ago
Rankings
Downloads: 3.1%
Dependent packages count: 3.2%
Forks count: 9.6%
Average: 11.8%
Dependent repos count: 21.5%
Stargazers count: 21.6%
Last synced:
6 months ago
Dependencies
.github/workflows/build_test_deploy.yml
actions
- actions/cache/restore v3 composite
- actions/cache/save v3 composite
- actions/checkout v3 composite
- actions/download-artifact v3 composite
- actions/setup-python v4 composite
- actions/upload-artifact v3 composite
- codecov/codecov-action v3 composite
- pypa/gh-action-pypi-publish release/v1 composite
.maint/requirements.txt
pypi
- click *
- fuzzywuzzy *
pyproject.toml
pypi
- importlib_resources python_version < "3.9"
- matplotlib >= 3.4.2
- nibabel >= 3.0.1
- nilearn >= 0.5.2
- nipype *
- numpy *
- pandas *
- pybids *
- pyyaml *
- seaborn *
- svgutils >= 0.3.4
- templateflow *
.github/workflows/contrib.yml
actions
- actions/checkout v4 composite
- actions/setup-python v5 composite
- pre-commit/action v3.0.1 composite