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Recent Releases of eds-scikit

eds-scikit - v0.1.8

What's Changed

  • Fix annonce bar in doc by @svittoz in https://github.com/aphp/eds-scikit/pull/63
  • new coverage by @svittoz and @percevalw in https://github.com/aphp/eds-scikit/pull/66
  • pyarrow fix by @svittoz in https://github.com/aphp/eds-scikit/pull/65
  • fix: remove OMOP <>_date columns by @Thomzoy in https://github.com/aphp/eds-scikit/pull/59
  • Add omop teva module by @svittoz

Full Changelog: https://github.com/aphp/eds-scikit/compare/v0.1.7...v0.1.8

- Python
Published by svittoz over 1 year ago

eds-scikit -

What's Changed

  • Fix latency due to koalas cache by @svittoz in https://github.com/aphp/eds-scikit/pull/50
  • Remove empty path by @TheooJ in https://github.com/aphp/eds-scikit/pull/57
  • allows naming - move improve performance file by @svittoz in https://github.com/aphp/eds-scikit/pull/54
  • Bioclean edit by @svittoz in https://github.com/aphp/eds-scikit/pull/51
  • Patch pyarrow.open_stream to support pyarrow>0.17 by @percevalw in https://github.com/aphp/eds-scikit/pull/52
  • Release new version by @svittoz in https://github.com/aphp/eds-scikit/pull/62

New Contributors

  • @svittoz made their first contribution in https://github.com/aphp/eds-scikit/pull/50
  • @percevalw made their first contribution in https://github.com/aphp/eds-scikit/pull/52

Full Changelog: https://github.com/aphp/eds-scikit/compare/v0.1.6...v0.1.7

- Python
Published by svittoz almost 2 years ago

eds-scikit - v0.1.6

What's Changed

  • Viz trajectories by @JCharline in https://github.com/aphp/eds-scikit/pull/41
  • chore: cap pip to 23 by @Thomzoy in https://github.com/aphp/eds-scikit/pull/46
  • Feat: support array type for datetime_ref in plot_age_pyramid() by @Vincent-Maladiere in https://github.com/aphp/eds-scikit/pull/43
  • Allow personids arg in HiveData readtable by @TheooJ in https://github.com/aphp/eds-scikit/pull/47
  • Tools compatibility by @Aremaki in https://github.com/aphp/eds-scikit/pull/48
  • Bump to version 0.1.6 by @Aremaki in https://github.com/aphp/eds-scikit/pull/49

New Contributors

  • @JCharline made their first contribution in https://github.com/aphp/eds-scikit/pull/41
  • @TheooJ made their first contribution in https://github.com/aphp/eds-scikit/pull/47

Full Changelog: https://github.com/aphp/eds-scikit/compare/v0.1.5...v0.1.6

- Python
Published by Aremaki over 2 years ago

eds-scikit - v0.1.5

What's Changed

  • New arrow connector to save locally by @Thomzoy in https://github.com/aphp/eds-scikit/pull/37
  • Feature: Add spark cache.count() and display limit for koalas by @Vincent-Maladiere in https://github.com/aphp/eds-scikit/pull/39
  • Phenotyping by @Thomzoy in https://github.com/aphp/eds-scikit/pull/38
  • bump to v0.1.5 by @Thomzoy in https://github.com/aphp/eds-scikit/pull/44

Full Changelog: https://github.com/aphp/eds-scikit/compare/v0.1.4...v0.1.5

- Python
Published by Thomzoy almost 3 years ago

eds-scikit - v0.1.4

Changelog

Added

  • Allow saving DB locally in client or cluster mode
  • Add data cleaning function to handle incorrect datetime in spark
  • Filter biology config on care site

Fixed

  • Consultations date for OMOP & I2B2

Pull Requests

  • FIX I2B2 get_consultations_date() by @Vincent-Maladiere in https://github.com/aphp/eds-scikit/pull/32
  • small IO and biology fixes by @Thomzoy in https://github.com/aphp/eds-scikit/pull/33
  • Bump to v0.1.4 by @Vincent-Maladiere in https://github.com/aphp/eds-scikit/pull/34

Full Changelog: https://github.com/aphp/eds-scikit/compare/v0.1.3...v0.1.4

- Python
Published by Vincent-Maladiere about 3 years ago

eds-scikit - v0.1.3

Changelog

Added

  • New BackendDispatcher to handle framework-specific functions
  • I2B2 to OMOP connector

Pull Requests

  • chores: add zenodo DOI by @Thomzoy in https://github.com/aphp/eds-scikit/pull/17
  • Let it snow by @Thomzoy in https://github.com/aphp/eds-scikit/pull/19
  • feat: Add the BackendDispatcher object by @Vincent-Maladiere in https://github.com/aphp/eds-scikit/pull/20
  • feat: add our I2B2 to OMOP converter by @Vincent-Maladiere in https://github.com/aphp/eds-scikit/pull/21
  • Maintenance: simplify hive and i2b2_mapping logic by @Vincent-Maladiere in https://github.com/aphp/eds-scikit/pull/24
  • hotfix by @Vincent-Maladiere in https://github.com/aphp/eds-scikit/pull/26
  • DRAFT: adding biology support to i2b2 connector by @Thomzoy in https://github.com/aphp/eds-scikit/pull/27
  • docs: :lipstick: Update bioclean table for clarity by @Aremaki in https://github.com/aphp/eds-scikit/pull/23
  • V0.1.3 by @Thomzoy in https://github.com/aphp/eds-scikit/pull/28

Full Changelog: https://github.com/aphp/eds-scikit/compare/v0.1.2...v0.1.3

- Python
Published by Thomzoy about 3 years ago

eds-scikit - v0.1.2

Changelog

Added

  • Adding CITATION.cff
  • Using mike as a documentation provider

Fixed

  • Correct build to PyPI
  • Renaming from EDS-Scikit to eds-scikit

Pull Requests

  • Documentation: use mike for versioning the documentation during the CI by @Vincent-Maladiere in https://github.com/aphp/eds-scikit/pull/11
  • hot_fix for mike doc by @Vincent-Maladiere in https://github.com/aphp/eds-scikit/pull/12
  • hf2mike_doc by @Vincent-Maladiere in https://github.com/aphp/eds-scikit/pull/13
  • hf3mike_doc by @Vincent-Maladiere in https://github.com/aphp/eds-scikit/pull/14
  • hf4mike_doc by @Vincent-Maladiere in https://github.com/aphp/eds-scikit/pull/15
  • Various chores by @Thomzoy in https://github.com/aphp/eds-scikit/pull/9
  • Bump to v0.1.2 by @Thomzoy in https://github.com/aphp/eds-scikit/pull/16

Full Changelog: https://github.com/aphp/eds-scikit/compare/v0.1.1...v0.1.2

- Python
Published by Thomzoy about 3 years ago

eds-scikit - v0.1.1

Changelog

Added

  • Various project metadata
  • Full CI pipeline
  • License checker in CI

Fixed

  • Broken links in documentation and badges

Pull Requests

  • fix: tweaks/typos/broken links due to GH switch by @Thomzoy in https://github.com/aphp/EDS-Scikit/pull/1
  • Maintenance: update the setup logic and CI by @Vincent-Maladiere in https://github.com/aphp/EDS-Scikit/pull/2
  • who let the dogs out by @Vincent-Maladiere in https://github.com/aphp/EDS-Scikit/pull/4
  • fix: testing for age pyramid by @Thomzoy in https://github.com/aphp/EDS-Scikit/pull/5
  • Chores: Multiple tweaks by @Thomzoy in https://github.com/aphp/EDS-Scikit/pull/6
  • Bump to v0.1.1 by @Thomzoy in https://github.com/aphp/EDS-Scikit/pull/7

New Contributors

  • @Thomzoy made their first contribution in https://github.com/aphp/EDS-Scikit/pull/1
  • @Vincent-Maladiere made their first contribution in https://github.com/aphp/EDS-Scikit/pull/2
  • @Aremaki made their first contribution in https://github.com/aphp/EDS-Scikit/commit/e6eaacd1dad84ff2c64b2fe73e3b3e7ecb00bbd3

Full Changelog: https://github.com/aphp/EDS-Scikit/commits/v0.1.1

- Python
Published by Thomzoy about 3 years ago