Recent Releases of claident
claident - Claident v0.9.2025.05.10
The thirty-eighth release of 0.9 branch. Full Changelog: https://github.com/astanabe/Claident/compare/v0.9.2025.05.07...v0.9.2025.05.10
- Perl
Published by astanabe about 1 year ago
claident - Claident v0.9.2025.05.07
The thirty-seventh release of 0.9 branch. Full Changelog: https://github.com/astanabe/Claident/compare/v0.9.2025.04.13...v0.9.2025.05.07
- Perl
Published by astanabe about 1 year ago
claident - Claident v0.9.2025.04.13
The thirty-sixth release of 0.9 branch. Full Changelog: https://github.com/astanabe/Claident/compare/v0.9.2024.08.24...v0.9.2025.04.13
- Perl
Published by astanabe over 1 year ago
claident - Claident v0.9.2024.08.24
The thirty-fifth release of 0.9 branch. Full Changelog: https://github.com/astanabe/Claident/compare/v0.9.2024.08.22...v0.9.2024.08.24
- Perl
Published by astanabe almost 2 years ago
claident - Claident v0.9.2024.08.22
The thirty-fourth release of 0.9 branch. Full Changelog: https://github.com/astanabe/Claident/compare/v0.9.2024.06.10...v0.9.2024.08.22
- Perl
Published by astanabe almost 2 years ago
claident - Claident v0.9.2024.06.10
The thirty-third release of 0.9 branch. Full Changelog: https://github.com/astanabe/Claident/compare/v0.9.2024.03.04...v0.9.2024.06.10
- Perl
Published by astanabe about 2 years ago
claident - Claident v0.9.2024.03.04
The thirty-second release of 0.9 branch. Full Changelog: https://github.com/astanabe/Claident/compare/v0.9.2024.02.21...v0.9.2024.03.04
- Perl
Published by astanabe over 2 years ago
claident - Claident v0.9.2024.02.21
The thirty-first release of 0.9 branch. Full Changelog: https://github.com/astanabe/Claident/compare/v0.9.2024.02.15...v0.9.2024.02.21
- Perl
Published by astanabe over 2 years ago
claident - Claident v0.9.2024.02.15
The thirtieth release of 0.9 branch. Full Changelog: https://github.com/astanabe/Claident/compare/v0.9.2024.02.14...v0.9.2024.02.15
- Perl
Published by astanabe over 2 years ago
claident - Claident v0.9.2024.02.14
The twenty-ninth release of 0.9 branch. Full Changelog: https://github.com/astanabe/Claident/compare/v0.9.2024.02.13...v0.9.2024.02.14
- Perl
Published by astanabe over 2 years ago
claident - Claident v0.9.2024.02.13
The twenty-eighth release of 0.9 branch. Full Changelog: https://github.com/astanabe/Claident/compare/v0.9.2024.02.11...v0.9.2024.02.13
- Perl
Published by astanabe over 2 years ago
claident - Claident v0.9.2024.02.11
The twenty-seventh release of 0.9 branch. Full Changelog: https://github.com/astanabe/Claident/compare/v0.9.2023.12.05...v0.9.2024.02.11
- Perl
Published by astanabe over 2 years ago
claident - Claident v0.9.2023.12.05
The twenty-sixth release of 0.9 branch. Full Changelog: https://github.com/astanabe/Claident/compare/v0.9.2022.04.28...v0.9.2023.12.05
- Perl
Published by astanabe over 2 years ago
claident - Claident v0.9.2022.04.28
The twenty-fifth release of 0.9 branch. "--tableformat" option of clfiltersum was fixed. Calculating tag jump probability when "--pjump" is given was changed in clremovecontam. Several potentially erroneous codes were fixed in clremovecontam. Calculating pforwardjump2 (F') and preversejump2 (R') was fixed in clremovecontam. "--fwerunit" option was added to clremovecontam and default was set to WHOLE.
- Perl
Published by astanabe about 4 years ago
claident - Claident v0.9.2022.04.20
The twenty-fourth release of 0.9 branch. "--fullfill" option was added to clfillassign. "--otunamereplace" and "--base62encoding" options were added to clfiltersum. Several settings of clplotwordcloud and clsumtaxa were changed.
- Perl
Published by astanabe over 4 years ago
claident - Claident v0.9.2022.04.17
The twenty-third release of 0.9 branch. A problem of clplotwordcloud when --append is not enabled was fixed. A bug of file concatenation in clsplitseq was fixed. Parallel processing of clfilterseq, climportfastq, clremovecontam and clsplitseq were refined.
- Perl
Published by astanabe over 4 years ago
claident - Claident v0.9.2022.04.16
The twenty-second release of 0.9 branch. Several problems of clplotwordcloud were fixed.
- Perl
Published by astanabe over 4 years ago
claident - Claident v0.9.2022.04.12
The twenty-first release of 0.9 branch. Problems of exclusive access control in clsplitseq and cltruncprimer were fixed. A problem of lock directory handling in clmakeidentdb was fixed. Problems of SQL statement handling of clmakecachedb and clidentseq were fixed.
- Perl
Published by astanabe over 4 years ago
claident - Claident v0.9.2022.04.11
The twentieth release of 0.9 branch. Several potentially erroneous exclusive access controls were fixed. Database file exclusive access control was added to clmakeidentdb.
- Perl
Published by astanabe over 4 years ago
claident - Claident v0.9.2022.04.07
The nineteenth release of 0.9 branch. Removal of tag-jump (index-hopping) based on binomial test using user-specified tag jump probability were changed in clremovecontam. Several minor problems were fixed in clplotwordcloud. A bug of cltruncprimer was fixed. Several parallel processing routines were refined. An output bug of clclassseqv was fixed.
- Perl
Published by astanabe over 4 years ago
claident - Claident v0.9.2022.03.23
The eighteenth release of 0.9 branch. New methods to estimate probability of tag jump and contamination using unused tag combinations and blanks and to remove tag jump and contamination based on binomial test were implemented. Compressor/Decompressor of GZIP and BZIP2 were changed to pigz and lbzip2.
- Perl
Published by astanabe over 4 years ago
claident - Claident v0.9.2022.02.18
The seventeenth release of 0.9 branch. A new command cltruncprimer was added. This command can truncate primer matching positions and add tag/index sequence information to sequence labels. This is recommended for importing already-demultiplexed FASTQ files.
- Perl
Published by astanabe over 4 years ago
claident - Claident v0.9.2022.01.26
The sixteenth release of 0.9 branch. Adding additional reference sequences option was added to clremovechimev.
- Perl
Published by astanabe over 4 years ago
claident - Claident v0.9.2022.01.20
The fifteenth release of 0.9 branch. Fix a bug of taxonomy database connection.
- Perl
Published by astanabe over 4 years ago
claident - Claident v0.9.2022.01.19
The fourteenth release of 0.9 branch. Version number was fixed. Copyright notice was updated. Outputs of clsplitseq from already-demultiplexed illumina fastq were refined.
- Perl
Published by astanabe over 4 years ago
claident - Claident v0.9.2022.01.12
The thirteenth release of 0.9 branch. A function treating UDB uchime databases was added to clremovechimev.
- Perl
Published by astanabe over 4 years ago
claident - Claident v0.9.2021.12.16
The twelfth release of 0.9 branch. Taxonomic filtering options were added to clfilterseq. Fix a bug of treating multiple primer sets in clsplitseq.
- Perl
Published by astanabe over 4 years ago
claident - Claident v0.9.2021.10.22
The eleventh release of 0.9 branch. Dereplication in cldenoiseseqd was parallelized.
- Perl
Published by astanabe almost 5 years ago
claident - Claident v0.9.2021.10.19
The tenth release of 0.9 branch. The new command clmakeidentdb was added. The identdb-associated function was added to clidentseq. RefSeq accession removal function was added to clmaketaxdb and clretrieveacc. Duplicate hits handling in clmakecachedb was fixed. The outputjump option was added to clsplitseq. The problem that pseudo-pooling does not work in cldenoiseseqd was fixed. The fuseotu option was added to clsumtaxa.
- Perl
Published by astanabe almost 5 years ago
claident - Claident v0.9.2021.07.28
The ninth release of 0.9 branch. The "-mt_mode 1" option has been deleted to execute BLASTN in clmakdecachedb.
- Perl
Published by astanabe almost 5 years ago
claident - Claident v0.9.2021.07.09
The eighth release of 0.9 branch. The "-mt_mode 1" option has been added to execute BLASTN in clmakdecachedb.
- Perl
Published by astanabe about 5 years ago
claident - Claident v0.9.2021.03.25
The seventh release of 0.9 branch. Support functions for quantitative metabarcoding based on Ushio et al. were added.
- Perl
Published by astanabe over 5 years ago
claident - Claident v0.9.2020.12.17
The sixth release of 0.9 branch. Several database-associated commands were updated.
- Perl
Published by astanabe over 5 years ago
claident - Claident v0.9.2020.12.06
The sixth release of 0.9 branch. Several bugs causing stopping were fixed.
- Perl
Published by astanabe over 5 years ago
claident - Claident v0.9.2020.11.27
The fifth release of 0.9 branch. Two-tailed test was changed to one-tailed test in clremovecontam.
- Perl
Published by astanabe over 5 years ago
claident - Claident v0.9.2020.11.17
The fourth release of 0.9 branch.
- Perl
Published by astanabe over 5 years ago
claident - Claident v0.9.2020.11.11
The third release of 0.9 branch.
- Perl
Published by astanabe over 5 years ago
claident - Claident v0.9.2020.11.10
The second release of 0.9 branch.
- Perl
Published by astanabe over 5 years ago
claident - Claident v0.9.2020.11.06
New release of 0.9 branch.
- Perl
Published by astanabe over 5 years ago
claident - Claident v0.2.2019.05.10
The tenth release on Github.
- Perl
Published by astanabe about 7 years ago
claident - Claident v0.2.2019.05.09
The ninth release on Github.
- Perl
Published by astanabe about 7 years ago
claident - Claident v0.2.2019.04.27
The eighth release on Github.
- Perl
Published by astanabe about 7 years ago
claident - Claident v0.2.2018.05.29
The seventh release on Github.
- Perl
Published by astanabe about 8 years ago
claident - Claident v0.2.2018.05.08
The sixth release on Github.
- Perl
Published by astanabe about 8 years ago
claident - Claident v0.2.2018.05.07
The fifth release on Github.
- Perl
Published by astanabe about 8 years ago
claident - Claident v0.2.2017.05.22
The fourth release on GitHub.
- Perl
Published by astanabe about 9 years ago
claident - Claident v0.2.2017.05.20
The third release on GitHub.
- Perl
Published by astanabe about 9 years ago
claident - Claident v0.2.2017.05.06
The second release on GitHub.
- Perl
Published by astanabe about 9 years ago
claident - Claident v0.2.2016.08.05
First release on GitHub.
- Perl
Published by astanabe almost 10 years ago