iasdt.r

IASDT.R: Modelling the distribution of invasive alien plant species in Europe

https://github.com/biodt/iasdt.r

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Repository

IASDT.R: Modelling the distribution of invasive alien plant species in Europe

README.Rmd

---
output: github_document
---


[![R-CMD-check](https://github.com/BioDT/IASDT.R/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/BioDT/IASDT.R/actions/workflows/R-CMD-check.yaml)


# IASDT.R: Modelling the distribution of invasive alien plant species in Europe

```{r}
#| include = FALSE
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%")

.Today <- paste0("Last update: ", lubridate::today())
```

## Overview

[`IASDT.R`](https://biodt.github.io/IASDT.R) supports the invasive alien species (IAS) Digital Twin (`IASDT`), as part of the EU-funded
BioDT project. This R package provides functions for processing input data (biotic and abiotic) and modelling the distribution of invasive alien plant species across Europe using joint species distribution models. By the end of the project, it is planned that the package will enable end users to access model outputs (e.g., prediction maps) directly from R.

- More information on the BioDT project can be found at this link.
- For an overview on the IASDT, see Khan, El-Gabbas, et al. .
- Documentation of the package functions can be found here.
- Click here for the workflow of the `IASDT`.

 



## Installing the package

The `IASDT.R` package is currently under development. To install the most-recent development version of the package, use the following command:

```{r, eval=FALSE}
remotes::install_github(repo = "BioDT/IASDT.R", dependencies = TRUE)
```

To update the package, use:

```{r, eval=FALSE}
remotes::update_packages("IASDT.R", dependencies = TRUE)
```

If you are using renv, update the package with:

```{r, eval=FALSE}
renv::update("IASDT.R", prompt = FALSE)
```



## Contribute to the package

Contributions, suggestions, and bug reports are welcome. Please make changes on a new branch and submit a pull request or make an issue [here](https://github.com/BioDT/IASDT.R/issues).

> For questions, please get in touch with [me](https://elgabbas.netlify.app/) at `ahmed.el-gabbas[at]ufz[dot]de`



## Citation

If you use the `IASDT.R` package, please cite it as: 

> El-Gabbas, A. (2025). **IASDT.R: Modelling the distribution of invasive alien plant species in Europe**. 10.5281/zenodo.14834384, R package version 0.1.05; https://github.com/BioDT/IASDT.R; https://biodt.eu.

`r kableExtra::text_spec(.Today, color = "grey")`

Owner

Citation (CITATION.cff)

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
title: "IASDT.R: Modelling the distribution of invasive alien plant species in Europe"
abstract: "IASDT.R supports the invasive alien species (IAS) Digital Twin (IASDT), as part of the EU-funded BioDT project. This package provides functions for processing input data (biotic and abiotic) and modelling the distribution of invasive alien plant species across Europe using joint species distribution models."
authors:
  - family-names: El-Gabbas
    given-names: Ahmed
    orcid: https://orcid.org/0000-0003-2225-088X
version: 0.1.4
date-released: 2025-02-06
url: "https://biodt.github.io/IASDT.R"
repository-code: "https://github.com/BioDT/IASDT.R"
doi: 10.5281/zenodo.14834384
keywords:
- digital-twin
- r
- species-distribution-modelling
- invasive-species
- europe
- sdms
- hmsc
- biodt
- ufz

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