qtl-mapping
Science Score: 26.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (11.4%) to scientific vocabulary
Keywords
Repository
Basic Info
- Host: GitHub
- Owner: smcclatchy
- License: other
- Language: R
- Default Branch: main
- Homepage: https://smcclatchy.github.io/qtl-mapping/
- Size: 266 MB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 1
- Open Issues: 5
- Releases: 1
Topics
Metadata Files
README.md
The Carpentries Workbench Template R Markdown Lesson
This lesson is a template lesson that uses The Carpentries Workbench.
Note about lesson life cycle stage
Although the config.yaml states the life cycle stage as pre-alpha, the template is stable and ready to use. The life cycle stage is preset to "pre-alpha" as this setting is appropriate for new lessons initialised using the template.
Create a new repository from this template
To use this template to start a new lesson repository,
make sure you're logged into Github.
Visit https://github.com/carpentries/workbench-template-rmd/generate
and follow the instructions.
Checking the 'Include all branches' option will save some time waiting for the first website build
when your new repository is initialised.
If you have any questions, contact @tobyhodges
Configure a new lesson
Follow the steps below to complete the initial configuration of a new lesson repository built from this template:
- Make sure GitHub Pages is activated:
navigate to Settings,
select Pages from the left sidebar,
and make sure that
gh-pagesis selected as the branch to build from. If nogh-pagesbranch is available, check Actions to see if the first website build workflows are still running. The branch should become available when those have completed. - Adjust the
config.yamlfile: this file contains global parameters for your lesson site. Individual fields within the file are documented with comments (beginning with#) At minimum, you should adjust all the fields marked 'FIXME':titlecreatedkeywordslife_cycle(the default, pre-alpha, is the appropriate for brand new lessons)contact
- Annotate the repository with site URL and topic tags:
navigate back to the repository landing page and
click on the gear wheel/cog icon (similar to )
at the top-right of the About box.
Check the "Use your GitHub Pages website" option,
and add some keywords and other annotations to describe your lesson
in the Topics field.
At minimum, these should include:
lesson- the life cycle of the lesson (e.g.
pre-alpha) - the human language the lesson is written in (e.g.
deutsch)
- Adjust the name of the
.Rprojfile. It is simplest to make this match the name of the repository. - Adjust the
CODE_OF_CONDUCT.md,CONTRIBUTING.md, andLICENSE.mdfiles as appropriate for your project.-
CODE_OF_CONDUCT.md: if you are using this template for a project outside The Carpentries, you should adjust this file to describe who should be contacted with Code of Conduct reports, and how those reports will be handled. -
CONTRIBUTING.md: depending on the current state and maturity of your project, the contents of the template Contributing Guide may not be appropriate. You should adjust the file to help guide contributors on how best to get involved and make an impact on your lesson. -
LICENSE.md: in line with the terms of the CC-BY license, you should ensure that the copyright information provided in the license file is accurate for your project.
-
- Update this README with relevant information about your lesson and delete this section.
Owner
- Name: Sue McClatchy
- Login: smcclatchy
- Kind: user
- Location: Bar Harbor, Maine
- Company: @TheJacksonLaboratory
- Website: https://www.jax.org/people/susan-mcclatchy
- Twitter: SueMcclatchy
- Repositories: 24
- Profile: https://github.com/smcclatchy
I do bioinformatics @TheJacksonLaboratory.
GitHub Events
Total
- Create event: 6
- Release event: 1
- Issues event: 31
- Delete event: 4
- Issue comment event: 26
- Push event: 334
- Pull request event: 14
Last Year
- Create event: 6
- Release event: 1
- Issues event: 31
- Delete event: 4
- Issue comment event: 26
- Push event: 334
- Pull request event: 14
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 13
- Total pull requests: 14
- Average time to close issues: 5 days
- Average time to close pull requests: 8 days
- Total issue authors: 2
- Total pull request authors: 3
- Average comments per issue: 1.08
- Average comments per pull request: 0.79
- Merged pull requests: 7
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 13
- Pull requests: 14
- Average time to close issues: 5 days
- Average time to close pull requests: 8 days
- Issue authors: 2
- Pull request authors: 3
- Average comments per issue: 1.08
- Average comments per pull request: 0.79
- Merged pull requests: 7
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- smcclatchy (12)
- dmgatti (4)
Pull Request Authors
- smcclatchy (12)
- tobyhodges (1)
- dmgatti (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- actions/upload-artifact v4 composite
- actions/checkout v4 composite
- carpentries/actions/check-valid-pr main composite
- carpentries/actions/comment-diff main composite
- carpentries/actions/download-workflow-artifact main composite
- carpentries/actions/download-workflow-artifact main composite
- carpentries/actions/remove-branch main composite
- carpentries/actions/check-valid-pr main composite
- carpentries/actions/comment-diff main composite
- actions/checkout v4 composite
- actions/upload-artifact v4 composite
- carpentries/actions/check-valid-pr main composite
- carpentries/actions/setup-lesson-deps main composite
- carpentries/actions/setup-sandpaper main composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- actions/checkout v4 composite
- carpentries/actions/setup-lesson-deps main composite
- carpentries/actions/setup-sandpaper main composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- actions/checkout v4 composite
- carpentries/actions/check-valid-credentials main composite
- carpentries/actions/update-lockfile main composite
- carpentries/create-pull-request main composite
- r-lib/actions/setup-r v2 composite
- actions/checkout v4 composite
- carpentries/actions/check-valid-credentials main composite
- carpentries/actions/update-workflows main composite
- carpentries/create-pull-request main composite