goombay - v0.24.8

What's Changed

• improved accuracy for gotoh alignments by @dawnandrew100 in https://github.com/lignum-vitae/goombay/pull/21

Full Changelog: https://github.com/lignum-vitae/goombay/compare/v0.24.7...v0.24.8

- Python
Published by dawnandrew100 11 months ago

goombay - v0.24.7

What's Changed

• multi alignments for smith waterman by @dawnandrew100 in https://github.com/lignum-vitae/goombay/pull/19
• gotoh local all alignments option by @dawnandrew100 in https://github.com/lignum-vitae/goombay/pull/20

Full Changelog: https://github.com/lignum-vitae/goombay/compare/v0.24.5...v0.24.7

- Python
Published by dawnandrew100 11 months ago

goombay - v0.24.5

What's Changed

• rename phylo.py to cluster.py and add test for Neighbor-Joining by @dawnandrew100 in https://github.com/lignum-vitae/goombay/pull/17
• Branching traceback for all alignments and fix for WSB algorithm by @dawnandrew100 in https://github.com/lignum-vitae/goombay/pull/18

Full Changelog: https://github.com/lignum-vitae/goombay/compare/v0.24.3...v0.24.5

- Python
Published by dawnandrew100 11 months ago

goombay - v0.24.3

What's Changed

• Normalisation works with substitution matrices by @dawnandrew100 in https://github.com/lignum-vitae/goombay/pull/16

Full Changelog: https://github.com/lignum-vitae/goombay/compare/v0.24.2...v0.24.3

- Python
Published by dawnandrew100 11 months ago

goombay - v0.24.2

What's Changed

• fix normalization for when substitution matrix is used by @dawnandrew100 in https://github.com/lignum-vitae/goombay/pull/15

Full Changelog: https://github.com/lignum-vitae/goombay/compare/v0.24.1...v0.24.2

- Python
Published by dawnandrew100 11 months ago

goombay - v0.24.1

What's Changed

• Feng-Doolittle algorithm implementation by @Demcalves in https://github.com/lignum-vitae/goombay/pull/12
• Ratcliff Obershelp alg by @dawnandrew100 in https://github.com/lignum-vitae/goombay/pull/13
• Add scoring matrix and type hints by @dawnandrew100 in https://github.com/lignum-vitae/goombay/pull/14

New Contributors

• @Demcalves made their first contribution in https://github.com/lignum-vitae/goombay/pull/12

Full Changelog: https://github.com/lignum-vitae/goombay/compare/v0.22.0...v0.24.1

- Python
Published by dawnandrew100 12 months ago

goombay - v0.22.0

What's Changed

• Seven new algorithms
  • LIPNS
  • MLIPNS
  • Hamann
  • Simple Matching Coefficient
  • Length Ratio
  • Prefix Similarity
  • Postfix Similarity
• Updated README.md
• Tests for seven new algorithms

Merged Pull Requests

• keeps master and develop branch in sync by @dawnandrew100 in https://github.com/lignum-vitae/goombay/pull/1
• Merge commits from master to develop by @dawnandrew100 in https://github.com/lignum-vitae/goombay/pull/2
• Clearer sources by @dawnandrew100 in https://github.com/lignum-vitae/goombay/pull/3
• Delete .github/workflows/sync-branches.yml by @dawnandrew100 in https://github.com/lignum-vitae/goombay/pull/4
• PEP 8 Naming conventions by @dawnandrew100 in https://github.com/lignum-vitae/goombay/pull/5
• black formatted by @dawnandrew100 in https://github.com/lignum-vitae/goombay/pull/6
• Add Longest Common Substring by @dawnandrew100 in https://github.com/lignum-vitae/goombay/pull/7
• Potential fix for code scanning alert no. 2: Workflow does not contain permissions by @dawnandrew100 in https://github.com/lignum-vitae/goombay/pull/8
• Potential fix for code scanning alert no. 1: Workflow does not contain permissions by @dawnandrew100 in https://github.com/lignum-vitae/goombay/pull/9
• MLIPNS and tests by @dawnandrew100 in https://github.com/lignum-vitae/goombay/pull/10
• New algorithms by @dawnandrew100 in https://github.com/lignum-vitae/goombay/pull/11

Full Changelog: https://github.com/lignum-vitae/goombay/commits/v0.22.0

- Python
Published by dawnandrew100 about 1 year ago