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fairscape_server

https://github.com/fairscape/fairscape_server

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
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    Academic publication links
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    Institutional organization owner
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    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (3.0%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

Basic Info
  • Host: GitHub
  • Owner: fairscape
  • License: mit
  • Language: Jupyter Notebook
  • Default Branch: main
  • Size: 39.8 MB
Statistics
  • Stars: 3
  • Watchers: 1
  • Forks: 0
  • Open Issues: 1
  • Releases: 2
Created about 4 years ago · Last pushed 6 months ago
Metadata Files
Readme License Citation

README.md

Python Metadata Service

The Metadata Service (MDS) of the FAIRSCAPE application, is the core backend service responsible for metadata managment. MDS is a RESTfull API implemented in python with the fastAPI framework. This service provides persitant globally unique identifiers (guids) as ARKS for many types of digital objects and maintains provenance metadata during the data science life-cycle.

As a generalist repository MDS supports a core metadata requirement derived from schema.org, but can be extended with any ontology annotation in JSON-LD.

Owner

  • Name: fairscape
  • Login: fairscape
  • Kind: organization

Citation (CITATION.cff) 

# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: FAIRSCAPE Server
message: >-
  If you use this software, please cite it using the
  metadata from this file.
type: software
authors:
  - given-names: Maxwell Adam
    family-names: Levinson
    email: mal8ch@virginia.edu
    affiliation: University of Virginia
    orcid: 'https://orcid.org/0000-0003-0384-8499'
  - given-names: Sadnan
    family-names: Al Manir
    affiliation: University of Virginia
    email: ma3xy@virginia.edu
    orcid: 'https://orcid.org/0000-0003-4647-3877'
  - orcid: 'https://orcid.org/0000-0002-1103-3882'
    given-names: Justin
    family-names: Niestroy
    email: jniestroy@gmail.com
    affiliation: University of Virginia
  - given-names: Timothy
    family-names: Clark
    email: twclark@virginia.edu
    affiliation: University of Virginia
    orcid: 'https://orcid.org/0000-0003-4060-7360'
repository-code: 'https://github.com/fairscape/mds_python'
url: 'https://fairscape.net'
abstract: >-
  FAIRSCAPE is a FAIRness and AI-readiness service providing
  deep provenance graphs and data dictionaries with data
  element validation on uploaded data, software, and
  computations, with special reference to biomedical
  datasets. FAIRSCAPE provenance graphs are represented
  using the Evidence Graph Ontology, EVI, an OWL2
  representation derived from W3C PROV and specialized for
  biomedical research data. The FAIRSCAPE server is a
  cloud-ready environment that processes RO-Crate
  data+metadata packages produced by the FAIRSCAPE CLI- and
  GUI-based clients, registers them with persistent IDs,
  decomposes and registers their components, computes
  provenance graph entailments of each component, and
  integrates the provenance graphs. FAIRSCAPE server
  provides a web-based GUI for inspecting metadata,
  visualizing provenance graphs, and obtaining downloads
  packaged as RO-Crates. 


  FAIRSCAPE is supported by the U.S. National Institutes of
  Health Bridge2AI program under grants OT2OD032742
  [Bridge2AI: Cell Maps for AI (CM4AI) Data Generation
  Project] and OT2OD032701 [Bridge2AI: Patient-Focused
  Collaborative Hospital Repository Uniting Standards
  (CHoRUS) for Equitable AI],  and by the Frederick Thomas
  Fund of the University of Virginia.
keywords:
  - FAIR
  - Data Science
  - EVI
  - Ontology
  - Provenance
license: MIT

GitHub Events

Total
  • Watch event: 1
  • Delete event: 7
  • Push event: 78
  • Pull request event: 5
  • Create event: 6
Last Year
  • Watch event: 1
  • Delete event: 7
  • Push event: 78
  • Pull request event: 5
  • Create event: 6

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 0
  • Total pull requests: 3
  • Average time to close issues: N/A
  • Average time to close pull requests: 2 minutes
  • Total issue authors: 0
  • Total pull request authors: 2
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 3
  • Average time to close issues: N/A
  • Average time to close pull requests: 2 minutes
  • Issue authors: 0
  • Pull request authors: 2
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
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Top Authors
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  • jniestroy (2)
  • mlev71 (1)
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