medmodels - v0.3.2

What's Changed

• feat: add groupby operands to query engine by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/406
• fix: AttributesTreeGroupOperand exclude and either_or by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/423
• fix: missing bindings for SingleAttributeWithoutIndexGroupOperand by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/425
• fix: grouped to_values typing by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/427
• test: add tests for new group_by querying operands by @MarIniOnz in https://github.com/limebit/medmodels/pull/428
• feat: add groupby operands to query engine by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/418
• refactor: change default edge-direction to BOTH by @MarIniOnz in https://github.com/limebit/medmodels/pull/430
• fix: formatting due to rust feature stabilization by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/432
• docs: update user guide by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/435

Full Changelog: https://github.com/limebit/medmodels/compare/v0.3.1...v0.3.2

- Python
Published by JabobKrauskopf 8 months ago

medmodels - v0.3.1

What's Changed

• docs: fix querynodes and queryedges docstrings by @MarIniOnz in https://github.com/limebit/medmodels/pull/411
• fix: buggy version warning banner removed by @FloLimebit in https://github.com/limebit/medmodels/pull/412

Full Changelog: https://github.com/limebit/medmodels/compare/v0.3.0...v0.3.1

- Python
Published by JabobKrauskopf 9 months ago

medmodels - v0.3.0

What's Changed

• fix: example dataset data types by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/317
• docs: add version switcher by @FloLimebit in https://github.com/limebit/medmodels/pull/318
• fix: adding a v to the version number via f-string by @FloLimebit in https://github.com/limebit/medmodels/pull/320
• chore: add pull request template by @MarIniOnz in https://github.com/limebit/medmodels/pull/316
• fix: attribute extraction without polars by @LauraBoenchenLB in https://github.com/limebit/medmodels/pull/313
• fix: polars version by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/330
• build: add scipy and scipy-stubs by @MarIniOnz in https://github.com/limebit/medmodels/pull/329
• ci: Remove pull request template and add pr comment github action by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/334
• fix: update pyo3 to fix linting warnings by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/339
• ci: remove checkout step by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/343
• fix: panic when node with edges to itself is deleted by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/345
• fix: to_ron now creates parent folders by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/346
• ci: github action caching improved by @FloLimebit in https://github.com/limebit/medmodels/pull/340
• refactor: medrecord schema - split into inferred and provided types by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/325
• build: setup uv dependency management by @FloLimebit in https://github.com/limebit/medmodels/pull/337
• fix: linting by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/372
• fix: add divide method to SingleValueOperand by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/378
• feat: implement query return values by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/375
• fix: query typing by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/380
• fix: neighbors and edges_connecting result when using query by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/381
• fix: add missing node index operations by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/383
• refactor: evaluation logic by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/392
• feat: add admissions example dataset by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/394
• test: fix tests after restructuring and update documentation by @MarIniOnz in https://github.com/limebit/medmodels/pull/398
• test: enforce 100 percent code coverage by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/361
• refactor: query engine return types by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/403
• docs: small refactorings before release by @MarIniOnz in https://github.com/limebit/medmodels/pull/409
• docs: rewrite user guide by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/407

Full Changelog: https://github.com/limebit/medmodels/compare/v0.2.1...v0.3.0

- Python
Published by JabobKrauskopf 10 months ago

medmodels - v0.2.1

This release mostly just provides more pre-built wheels on PyPI.

Full Changelog: https://github.com/limebit/medmodels/compare/v0.2.0...v0.2.1

- Python
Published by JabobKrauskopf about 1 year ago

medmodels - v0.2.0

What's Changed

• docs: update developer guide by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/183
• feat: representation and overview for group nodes and edges by @LauraBoenchenLB in https://github.com/limebit/medmodels/pull/163
• feat: Implement simple clone by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/204
• fix: remove_node now removes removed edges from group_mapping by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/206
• feat: Allow adding/appending to groups when adding nodes or edges by @MarIniOnz in https://github.com/limebit/medmodels/pull/203
• fix: Renaming absolute risk function for correct one (absolute risk reduction) by @MarIniOnz in https://github.com/limebit/medmodels/pull/209
• feat: Adding contingency table print and treatment groups variables renaming by @MarIniOnz in https://github.com/limebit/medmodels/pull/211
• fix: medrecord attribute tables overview by @LauraBoenchenLB in https://github.com/limebit/medmodels/pull/213
• feat: removing singular name functions and changing them to plural naming by @MarIniOnz in https://github.com/limebit/medmodels/pull/225
• refactor: query engine by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/231
• fix: comparison operations now correctly evaluate operand by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/233
• feat: implement exclude operation by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/243
• refactor: replace outgoingedges and incomingedges with edges by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/245
• feat: implement duration by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/246
• refactor: optimize treatment effect and associated functions with new query engine by @MarIniOnz in https://github.com/limebit/medmodels/pull/248
• fix: rust linting by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/263
• refactor: fast-computed representation of the MedRecord when in debugging mode by @MarIniOnz in https://github.com/limebit/medmodels/pull/270
• feat: added group input variable and fixed table by @LauraBoenchenLB in https://github.com/limebit/medmodels/pull/262
• refactor: stricter linting rules by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/290
• refactor: pin polars to 0.45.0 (rust), 1.17.0 (python) by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/297
• fix: add polars support for all datatypes by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/298
• feat: making static analysis as the default option for the TEE by @MarIniOnz in https://github.com/limebit/medmodels/pull/274
• chore: Drop support for python 3.9 and add support for 3.13 by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/299
• docs: rewrite readme by @FloLimebit in https://github.com/limebit/medmodels/pull/300
• fix: polars version by @LauraBoenchenLB in https://github.com/limebit/medmodels/pull/308
• feat: adding advanced example dataset by @MarIniOnz in https://github.com/limebit/medmodels/pull/267
• ci: github actions to use ubuntu 22.04 by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/310
• fix: the way essential covariates and one-hot-encoded ones are processed by @MarIniOnz in https://github.com/limebit/medmodels/pull/256
• fix: docs build error by @FloLimebit in https://github.com/limebit/medmodels/pull/311
• docs: add rule on resolving pr comments by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/312

Full Changelog: https://github.com/limebit/medmodels/compare/v0.1.2...v0.2.0

- Python
Published by JabobKrauskopf about 1 year ago

medmodels - v0.1.2

What's Changed

• refactor: full treatment effect report now returns typed dictionary by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/129
• refactor: continuous estimators by @MarIniOnz in https://github.com/limebit/medmodels/pull/130
• feat: add undirected version of neighbors to query engine by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/132
• refactor: remove .devcontainer, .vscode and examples by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/139
• refactor: move files and delete the ones that need refactoring by @MarIniOnz in https://github.com/limebit/medmodels/pull/145
• feat: implement datetime medrecordvalue by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/153
• feat: add support for polars datetime conversion by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/155
• feat: make schema accessible from python and add AttributeType by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/159
• refactor: sphinx setup by @FloLimebit in https://github.com/limebit/medmodels/pull/148

Full Changelog: https://github.com/limebit/medmodels/compare/v0.1.1...v0.1.2

- Python
Published by JabobKrauskopf over 1 year ago

medmodels - v0.1.1

What's Changed

• fix: typo in treatment effect by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/126
• test: Add tests for MedRecord schema and builder by @JabobKrauskopf in https://github.com/limebit/medmodels/pull/124
• fix: Optimizing Nearest Neighbors function by @MarIniOnz in https://github.com/limebit/medmodels/pull/125

Full Changelog: https://github.com/limebit/medmodels/compare/v0.1.0...v0.1.1

- Python
Published by JabobKrauskopf over 1 year ago

medmodels - v0.1.0

Full Changelog: https://github.com/limebit/medmodels/commits/v0.1.0

- Python
Published by JabobKrauskopf over 1 year ago

medmodels - v0.0.1-alpha.1 release

This is the first alpha release of the 0.0.1 version

- Python
Published by JabobKrauskopf over 2 years ago