training-material - Release 2025 August 01

Monthly release of the GTN materials is now available on the archive.

📰 News

• Scaling Up Hands-On Bioinformatics Training with TIAAS -- An Open University Perspective (July 03, 2025)
• Enhancing Scientific Training: The Galaxy Training Network\'s Role in the ELIXIR Training Life-Cycle (July 01, 2025)

📅 Events

• Galaxy: The Open Source Platform as an entry point to Digital Humanities and Research Data Management (July 02, 2025)

🛤️ Learning pathways

• From Zero To Hero with Python (July 02, 2025)

📚 Tutorials

• MGnify v5.0 Amplicon Pipeline (July 30, 2025)
• Training Custom YOLO Models for Segmentation of Bioimages (July 25, 2025)

❓ Faqs

• How can I use the Matrix messaging system for Galaxy Project communication? (July 02, 2025)

🛠️ Workflows

• MGnify amplicon summary tables (July 30, 2025)
• MGnify\'s amplicon pipeline v5.0 - rRNA prediction (July 30, 2025)
• MGnify\'s amplicon pipeline v5.0 - Quality control SE (July 30, 2025)
• MGnify\'s amplicon pipeline v5.0 - Quality control PE (July 30, 2025)
• MGnify\'s amplicon pipeline v5.0 - ITS (July 30, 2025)
• MGnify\'s amplicon pipeline v5.0 (July 30, 2025)
• MAPseq to ampvis2 (July 30, 2025)
• YOLO training and segmentation workflow (July 25, 2025)

🧑‍🏫 Contributors

• \@maulakhan (July 01, 2025)
• \@santamccloud (July 01, 2025)

💰 Grants

• \@oscars (July 01, 2025)

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training-material - Release 2025 July 01

Monthly release of the GTN materials is now available on the archive.

📰 News

• An Ode to the Galaxy Community and all I learned (June 19, 2025)

📚 Tutorials

• Comparison of two annotation tools - Helixer and Braker3 (June 20, 2025)
• Phylodiversity analysis quick tutorial (June 06, 2025)
• Life Traits Ecoregionalization workflow (June 02, 2025)
• Taxonomic Analysis of eDNA (June 02, 2025)

❓ Faqs

• How do I cite the tools I used in my history? (June 04, 2025)

🛠️ Workflows

• Comparison of two annotation tools: Helixer and Braker3 (June 20, 2025)
• Taxonomic Analysis of eDNA (June 02, 2025)

🧑‍🏫 Contributors

• \@ogerdfx (June 01, 2025)

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training-material - Release 2024 December 01

Monthly release of the GTN materials is now available on the archive.

📅 Events

• 🖖🏾 SPOC II: the Write-a-Than (November 26, 2024)
• Galaxy at Congresso Brasileiro de Biologia Evolutiva (November 12, 2024)

📚 Tutorials

• Updating tool versions in a tutorial (November 29, 2024)
• Create a subdomain for your community on UseGalaxy.eu (November 27, 2024)
• Tracking of mitochondria and capturing mitoflashes (November 20, 2024)
• Running the GTN website online using GitHub CodeSpaces (November 11, 2024)
• Alternative Celery Deployment for Galaxy (November 07, 2024)
• Single Cell Publication - Data Analysis (November 07, 2024)
• Single Cell Publication - Data Plotting (November 07, 2024)

❓ Faqs

• Add Toolshed category to a tool (November 13, 2024)
• Supporting Tutorial Mode (GTN-in-Galaxy) in a tutorial (November 07, 2024)

🛠️ Workflows

• Capturing mitoflashes (November 20, 2024)

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training-material - Release 2024 November 01

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training-material - Release 2024 September 01

Monthly release of the GTN materials is now available on the archive.

📅 Events

• From zero to hero with Python (August 20, 2024)

📚 Tutorials

• Genome annotation with Helixer (August 21, 2024)
• Marine Omics identifying biosynthetic gene clusters (August 19, 2024)
• Working with Beacon V2: A Comprehensive Guide to Creating, Uploading, and Searching for Variants with Beacons (August 06, 2024)
• Querying a Beacon Database for Copy Number Variants (CNVs) (August 06, 2024)
• Calculating α and β diversity from microbiome taxonomic data (August 01, 2024)

🛠️ Workflows

• Training - Helixer (August 21, 2024)
• Marine Omics identifying biosynthetic gene clusters (August 19, 2024)
• WF5DataInterpretation_Worklow (August 08, 2024)
• WF4QuantitationWorkflow (August 08, 2024)
• WF3VERIFICATIONWORKFLOW (August 08, 2024)
• WF2_Discovery-Workflow (August 08, 2024)
• WF1DatabaseGeneration_Workflow (August 08, 2024)
• Calculating diversity from microbiome taxonomic data (August 06, 2024)

🧑‍🏫 Contributors

• \@RZ9082 (August 01, 2024)
• \@natalie-wa (August 01, 2024)
• \@lybCNU (August 01, 2024)
• \@hujambo-dunia (August 01, 2024)
• \@dianichj (August 01, 2024)
• \@ahmedhamidawan (August 01, 2024)

💰 Funders

• \@mwk (August 01, 2024)

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