neurokit2 - 0.2.12

🚀 What’s New

See the NEWS file for the changelog.

• 0.2.12 (#1091) @DominiqueMakowski
• [Feature] Add new signal quality method for ECG and PPG (#1111) @peterhcharlton
• [fix] Divide by zero error in signal_fixpeaks #1116 (#1118) @hattajr
• [Fix] Fixed dead links (#1114) @Aioshiro
• [Feature] Allow read_xdf to read from URLs, and some typing/documentation improvements (#1117) @LebombJames
• Updated Elgendi reference in ppg_clean.py (#1104) @peterhcharlton
• Add signal tidypeaksonsets (#1106) @peterhcharlton
• [Feature] New UNSW QRS detector (#1102) @peterhcharlton
• Fix rsp_amplitude type error (#1103) @me-pic
• Add Pywavelets to dependencies (#1097) @biggates

👏 Thanks to

@Aioshiro, @DerAndereJohannes, @DominiqueMakowski, @LebombJames, @biggates, @hattajr, @me-pic and @peterhcharlton

- Python
Published by github-actions[bot] 8 months ago

neurokit2 - 0.2.11

🚀 What’s New

See the NEWS file for the changelog.

• 0.2.11 (#1022) @DominiqueMakowski
• Pass kwargs from ecgprocess to ecgclean (#1079) @atpage
• [Fix] Disable HRV DFA computation on signals with less than 12 rri (#1085) @DerAndereJohannes
• Update intervalstopeaks.py (#1086) @muellerelias
• [Fix] Replaced np.math with built-in math (#1075) @DerAndereJohannes
• [Update] changes scipy.signal.daub to PyWavelets format (#1074) @DerAndereJohannes
• [Fix] rsp_rate function (#1070) @me-pic
• [Fix] update data/database.py to use urllib methods. fixes #1061 (#1063) @ignatious-p
• [Change] ecg_quality interpolation from quadratic to "previous" (#1054) @cgastaud
• [Change] Update ppg_quality.py to use consistent interpolation method ('previous') (#1044) @athatcher13
• [Fix] Squeeze yvalues in signalinterpolate (#1055) @janwodnicki
• [Feature] Add new ECG delineator method: Peak-Prominence (Emrich et al., 2024) (#1053) @JonasEmrich
• [Docs] Add a note about the units used for the time-based HRV metrics. (#1049) @aweinstein
• [docs] Fix the docstring in edaprocess for SCRRiseTime (#1033) @DerAndereJohannes
• Fix: Lightmode now shows text correctly for the codebook (#1028) @DerAndereJohannes

👏 Thanks to

@DerAndereJohannes, @DominiqueMakowski, @JonasEmrich, @athatcher13, @atpage, @aweinstein, @cgastaud, @danibene, @ignatious-p, @jankwodnicki, @janwodnicki, @me-pic and @muellerelias

- Python
Published by github-actions[bot] 9 months ago

neurokit2 - 0.2.10

🚀 What’s New

See the NEWS file for the changelog.

• 0.2.10 (#992) @DominiqueMakowski
• [Fix] Prevent sparseda method from raising AttributeError (#1021) @visserle
• [Feature] Codebook Generation from Documentation (#1017) @DerAndereJohannes
• [Docs] Add info about NK ECG peak detection method (#1020) @peterhcharlton
• [Feature] PPG peak detection: Add MSPTDfast algorithm (Charlton et al., 2024) (#1018) @peterhcharlton
• [Fix] GUDB name consistency (#1016) @danibene
• [Fix] All docs-build warnings and errors (#1014) @DerAndereJohannes
• [Docs] Revise definition of pNN50 and pNN20 (#1013) @danibene
• [Fix] findpeaks neurokit index error (#1011) @ajb5d
• [Fix] Documentation Image Dependency (#1010) @DerAndereJohannes
• [Fix] Return an empty array rather than throwing an exception if no QRS dat… (#1007) @ajb5d
• [Docs] typo in ecg_quality docstring (#1004) @atpage
• return frequency in signal.signal_filter._signal_filter_sanitize as scalar (#998) @MarcBalle
• [Docs] fix location of misplaced double quotes in docstring of ecg_quality.py (#993) @S-N-2019

👏 Thanks to

@DerAndereJohannes, @DominiqueMakowski, @MarcBalle, @S-N-2019, @ajb5d, @atpage, @danibene, @peterhcharlton, @visserle and Marc Balle

- Python
Published by github-actions[bot] over 1 year ago

neurokit2 - 0.2.9

🚀 What’s New

See the NEWS file for the changelog.

• 0.2.9 (#982) @DominiqueMakowski
• [Fix] Correctly update on Pypi
• [feature] added PPG quality assessment functionality (#987) @peterhcharlton
• [Fix] Syntax to get colormap (#991) @danibene
• [Feature] Test for stats/correlation.py (#989) @ujdcodr

👏 Thanks to

@DominiqueMakowski, @danibene, @peterhcharlton and @ujdcodr

- Python
Published by github-actions[bot] almost 2 years ago

neurokit2 - 0.2.8

🚀 What’s New

See the NEWS file for the changelog.

• 0.2.8 (#926) @DominiqueMakowski
• [Feature] stimeventsfind to retrieve multi-channel stimulus events (#976) @DerAndereJohannes
• [Fix] refactor ecg_findpeaks (#973) @danibene
• [Fix] read_acqknowledge now also imports duplicated channel names (#975) @DerAndereJohannes
• [Fix] adding sampling rate parameter to eda_intervalrelated method (#974) @tilly111
• sparsEDA integration (#966) @stasinos
• [Fix] build docs warning (#968) @danibene
• [FIX] rr xcorr arange steps don't match (#960) @birm
• Update ecg_hrv.ipynb (#967) @Adam-Antios
• [Fix + Improvement] Faster ecgfindpeaks_hamilton and bug-fix (#947) @purpl3F0x
• [Docs] update docs to reflect implementation of respiration signal cleaning with khodadad2018 (#952) @danibene
• [Fix] Fixed rodrigues2021 ECG peaks detector (make it work with < 50Hz sampling rate) (#949) @LucaCerina
• [Improvement] Faster ecgfindpeaks_elgendi (#943) @purpl3F0x
• Remove tests from pyproject (#941) @Ninebell
• [Feature] Add Fast Visibility Graph Based ECG R-peak Detector (#939) @JonasEmrich

👏 Thanks to

@Adam-Antios, @DerAndereJohannes, @DominiqueMakowski, @JonasEmrich, @LucaCerina, @Ninebell, @birm, @danibene, @purpl3F0x, @stasinos, @tilly111 and Jonghoe Ku

- Python
Published by github-actions[bot] almost 2 years ago

neurokit2 - 0.2.7

🚀 What’s New

See the NEWS file for the changelog.

• 0.2.7 (#901) @DominiqueMakowski
• fixed sklearn sanity checks for valid_metrics (#925) @stamate
• [Feature] Add ECG peak detection by Manikandan (2012) (#920) @DominiqueMakowski
• [Fix] SCR_Peaks_Amplitude_Mean should be only computed on peaks (#917) @mperreir
• [Feature] complexity_lyapunov(): more efficient method to compute LLE (#906) @DominiqueMakowski
• [Fix] eda_plot throws ValueError when the number of onsets is not the same as the number of peaks (#916) @mperreir
• [Fix] complexity_coarsegraining(): fix method (#892) @DominiqueMakowski

👏 Thanks to

@DominiqueMakowski, @mperreir and @stamate

- Python
Published by github-actions[bot] over 2 years ago

neurokit2 - 0.2.6

🚀 What’s New

See the NEWS file for the changelog.

• 0.2.6 (#863) @DominiqueMakowski
• [Fix] docs build warning (#898) @danibene
• [Docs] typos (#896) @danibene
• [Feature] ppg_peaks() now has artifact correction (#890) @DominiqueMakowski
• [Breaking] *plot() method now don't accept `samplingrate` argument
• [Breaking] for *plot() and ecgfixpeaks(method="neurokit") (#889) @DominiqueMakowski
• [Feature] PPG plots improvements (#883) @DominiqueMakowski
• [Feature] Respiratory Amplitude Variability (RAV) (#873) @DominiqueMakowski
• [Feature] download zip (#882) @danibene
• [Docs] Minor Update README.rst (#886) @ParthaPratimBanik
• [Feature] read_xdf() - easily read and tidy up signals from Lab Streaming Layer (LSL) into a DataFrame (#874) @DominiqueMakowski
• [Feature] add randomstate to complexitysymbolize (#881) @danibene
• [Docs] ecg_process: improve documentation and readability (#871) @jchromik
• [FIX] KeyError in eventrelatedaddinfo (#868) @SimonLafran

👏 Thanks to

@DominiqueMakowski, @ParthaPratimBanik, @SimonLafran, @danibene and @jchromik

- Python
Published by github-actions[bot] over 2 years ago

neurokit2 - 0.2.5

🚀 What’s New

See the NEWS file for the changelog.

• 0.2.5 (#814) @DominiqueMakowski
• Fix/docs asyncio warning (#862) @danibene
• [Feature] HRV: Add SD/RMSSD index (Sollers, 2007) (#855) @DominiqueMakowski
• [Fix] version sklearn valid_metrics (#861) @danibene
• [Breaking] ecg_clean(): update biosppy method (#849) @DominiqueMakowski
• [Feature] EMG report (#841) @danibene
• [Fix] typo docstring eda process (#852) @danibene
• [Feature] filter signals with missing data (#839) @danibene
• ECG: Corrected Error in basSQI calculation (#840) @Jacob-Liam-Albaugh
• [Fix] Fixed memory baviour in hrv calc (#837) @ThomasGebhardt
• [Fix] interpolation error when simulating PPG data (#835) @danibene
• [Docs] various docs fixes (#834) @danibene
• [Fix] ECG delineate order (#815) @danibene
• Update ecg_process.py (#836) @BeardedBioelectronics
• [Fix] bishop peaks format (#833) @danibene
• [Fix] remove eda biosppy test (#825) @danibene
• [Feature] add total power as HRV feature (#822) @danibene
• [Fix] prevent deprecation warning in signal_interpolate() (#816) @danibene

👏 Thanks to

@BeardedBioelectronics, @DominiqueMakowski, @Jacob-Liam-Albaugh, @ThomasGebhardt, @danibene and Thomas Gebhardt

- Python
Published by github-actions[bot] over 2 years ago

neurokit2 - 0.2.4

🚀 What’s New

See the NEWS file for the changelog.

• 0.2.4 (#776) @DominiqueMakowski
• [Feature] Add sparsEDA algorithm for phasic / tonic EDA decomposition (#812) @DominiqueMakowski
• [Feature] Add Angular Entropy (AngEn) that can be used to get comEDA (#811) @DominiqueMakowski
• [Docs] add facecolor argument (#810) @the-visserd
• [Feature] add EDA report with interactive plot (#792) @danibene
• [Improvement] Fixes #784 and use random generator objects rather than np.random global RNG (#793) @lciti
• [Fix] frequency-domain HRV with lombscargle given unevenly spaced data (#800) @danibene
• [Fix] Function used in rsp_methods (#791) @danibene
• [Feature] add respiration report with interactive plot (#785) @danibene
• [Feature] EDA: Add autocor index to eda_intervalrelated() (#789) @DominiqueMakowski
• [Fix] interpolate signal with only one value (#787) @danibene
• [Fix] sanitize RSP extrema found by scipy method (#786) @danibene
• [Fix] EDA peak detection and sympathetic activity (#783) @GanshengT
• [Fix] invalid indices in ecg_delineate (#777) @danibene

👏 Thanks to

@DominiqueMakowski, @GanshengT, @danibene, @lciti, @the-visserd, Brunnerlab and Luca Citi

- Python
Published by github-actions[bot] almost 3 years ago

neurokit2 - 0.2.3

🚀 What’s New

See the NEWS file for the changelog.

• 0.2.3 (#749) @DominiqueMakowski
• [Fix] fix edgecase in ecg_delineate() (#775) @clastro
• Added MSPTD ppg peak detector (#768) @peterhcharlton
• Added creative commons license to documentation (#771) @peterhcharlton
• Fix ms hrv rsa + proposed fix for RSA P2T (#766) @vivile42
• [Fix] RVT Improvements (#754) @rostro36
• [Feature] add rsp_methods (basis for rsp reports) (#755) @rostro36

👏 Thanks to

@DominiqueMakowski, @clastro, @danibene, @peterhcharlton, @rostro36 and @vivile42

- Python
Published by github-actions[bot] about 3 years ago

neurokit2 - 0.2.2

🚀 What’s New

See the NEWS file for the changelog.

• 0.2.2 (#705) @DominiqueMakowski
• [docs] window size for locreg detrending (#747) @vasileermicioi
• [Feature] Compute RSP cycle symmetry features + new amplitude method (#746) @DominiqueMakowski
• [Feature] ECG R-Peak detection using visibility graphs (#745) @sokolmarek
• [Docs] Add example for EEG complexity analysis (#743) @DominiqueMakowski
• [data] Add eegresting1min_200hz (#742) @DominiqueMakowski
• [Example] Add microstates analysis example (#739) @anshu-97
• [Feature] Webcam video processing for remote physiology (rPPG, ...) (EXPLORATORY) (#736) @DominiqueMakowski
• [fix] fix signalfindpeaks_distances (#733) (#738) @mn5k
• fix read_bitalino (#737) @anshu-97
• [Feature] read_video() function read video files into array (mp4) (#735) @DominiqueMakowski
• [Fix] defaults detrend locreg (#730) @danibene
• [Fix] Detection of missing interbeat intervals (#732) @danibene
• [Fix] ECG delineator peak index (#731) @danibene
• [Feature] adjust HRV functions for missing intervals (#720) @danibene
• nk.signal_interpolate – Bugfix (#727) @richrobe
• [Feature] Report describing methods in PPG process (#707) @danibene
• [Feature] ECG inversion (#716) @danibene
• [Feature] use lombscargle PSD method without interpolation (#712) @danibene
• [Breaking] entropy_multiscale(): default dimension is now 3 instead of 2 (#715) @JoseAlanis
• [Docs] Typo fix in complexity_dimension() docstring (#713) @JoseAlanis
• [Feature] detrend R-R intervals (#711) @danibene
• [Feature] R-R intervals and associated timestamps as input to HRV functions (#710) @danibene
• [Fix] use signalfilter() in ecgclean() so that certain methods do not fail with low sampling rate (#709) @danibene
• [Fix] allow for bandstop filtering in signal_filter() (#708) @danibene
• [Feature] epochs_average(): compute grand average of epochs (#706) @DominiqueMakowski

👏 Thanks to

@DominiqueMakowski, @JoseAlanis, @ami-hseki, @anshu-97, @danibene, @mn5k, @richrobe, @sokolmarek and @vasileermicioi

- Python
Published by github-actions[bot] over 3 years ago

neurokit2 - 0.2.1

🚀 What’s New

See the NEWS file for the changelog.

• 0.2.1 (#645) @DominiqueMakowski
• [Breaking] martinez2003 method for ECG peak detection renamed martines2004 (#702) @peterhcharlton
• [Docs] Fix documentation of various HRV features (#698) @danibene
• [Fix] eda_peak(): Change peak detection from differentiation signal to phasic signal (#697) @Nattapong-OnePlanet
• [Docs] Fix documentation of RMSSD (#699) @danibene
• [Feature] Modify signal_interpolate for input with NaNs and extrapolation (#666) @danibene
• [Feature] Option to change interpolation rate of interbeat intervals for HRV frequency (#680) @danibene
• [Feature] Added Birn and Power RVT method. (#695) @rostro36
• [Fix] Calculation of number of NaNs in signal_fixpeaks() (#679) @danibene
• [Feature] MFDFA: allow for q=0 (#683) @DominiqueMakowski
• [Fix] Added detected rpeaks to ecg_process (#691) @rostro36
• [Fix] Fixed failing complexity test (#693) @rostro36
• [Feature] Add Harrison RVT (#688) @jannik-gut
• [Fix] ppg_plot() was not returning matplotlib.Figure (#678) @luisqtr
• [Docs] fix typo in signal_filter (#686) @danibene
• complexit struture revision (#664) @anshu-97
• [Feature] Mean Information Gain (MIG) and Fluctuation Complexity (FC) (#674) @DominiqueMakowski
• [Docs] Fix typo in hrv_time (#676) @KSCzzZ
• [Feature] Add Zong (2003) ECG peak detection method (#663) @anshu-97
• [Docs] fix typo (sampling rate) in epochs_plot example (#670) @danibene
• Fix typo in HRV example (#669) @changkun
• [Feature] Adapt fixpeaks for large gaps (#651) @danibene
• typo (#659) @danibene
• Sanitize input for dwt in ecg_delineate() (#662) @Tam-Pham
• [Feature] multiple methods of outlier identification (#647) @danibene

👏 Thanks to

@DominiqueMakowski, @JanCBrammer, @KSCzzZ, @Nattapong-OnePlanet, @Tam-Pham, @anshu-97, @changkun, @danibene, @jannik-gut, @luisqtr, @peterhcharlton and @rostro36

- Python
Published by github-actions[bot] over 3 years ago

neurokit2 - 0.2.0

🚀 What’s New

• A BRAND NEW WEBSITE with a revamped documentation, now hopefully much more useful to navigate. Check-it out: https://neuropsychology.github.io/NeuroKit/ and let us know what you think!!
• An overhaul of the Complexity Indices: With more than a 100 indices, NeuroKit is now the most comprehensive package to quantify chaos, entropy and fractal dimension of signals.
• Tons of other improvements and fixes ☺️

See the NEWS file for the changelog.

• 0.2.0 (#619) @DominiqueMakowski
• [Docs] Docstrings improvements (#643) @Max-ZiLiang
• [Website] Docstrings improvements (#641) @Max-ZiLiang
• [New] Website overhaul (#634) @DominiqueMakowski
• [Fix] signal_fixpeaks() allow kwargs (#638) @DominiqueMakowski
• [Breaking] Linear and Quadratic Trends indices are now based on raw polynomials (and other fit_* changes) (#635) @DominiqueMakowski
• [Fix] hrv_frequency(): changes in frequency bands correctly propagate (#630) @RichardBJ
• [Fix] Avoid duplicated input sanitization in eda_process (#631) @Rvb0rob0t
• [Breaking] Remove subepochrate argument in bioanalyze (#633) @DominiqueMakowski
• [Feature] add min, max, 80th & 20th percentiles as HRV features (#627) @danibene
• [New Feature]: Multichannel ECG Simulation (#625) @PierreElias
• Fix complexity_tolerance using recurrence method (#624) @gutierrezps
• Pylint subtle formatting fixes (#617) @anshu-97
• dev (#616) @DominiqueMakowski

👏 Thanks to

@DominiqueMakowski, @Max-ZiLiang, @PierreElias, @RichardBJ, @Rvb0rob0t, @anshu-97, @danibene and @gutierrezps

- Python
Published by github-actions[bot] almost 4 years ago

neurokit2 - 0.1.6

🚀 What’s New

See the NEWS file for the changelog.

• 0.1.6 (#579) @DominiqueMakowski
• Several bug fixes
• Replace ba output with sos for ECG filters and determine initial conditions (#612) @mscheltienne
• [Change] promac parameters exposition / doc update (#607) @levsilva
• Peaks fixes in ppg and ecg (#587) @zen-juen
• [Docs] Update signal_rate.py docstring for return param (#600) @cHemingway
• Error removed in the Readme EMG example part (#596) @MostafaFiroozi
• Support for reading multiple devices + events in read_bitalino (#592) @zen-juen

👏 Thanks to

@DominiqueMakowski, @JanCBrammer, @MostafaFiroozi, @cHemingway, @levsilva, @mscheltienne and @zen-juen

New Contributors

• @MostafaFiroozi made their first contribution in https://github.com/neuropsychology/NeuroKit/pull/596
• @cHemingway made their first contribution in https://github.com/neuropsychology/NeuroKit/pull/600
• @levsilva made their first contribution in https://github.com/neuropsychology/NeuroKit/pull/607
• @mscheltienne made their first contribution in https://github.com/neuropsychology/NeuroKit/pull/612

Full Changelog: https://github.com/neuropsychology/NeuroKit/compare/v0.1.5...v0.1.6

- Python
Published by github-actions[bot] about 4 years ago

neurokit2 - 0.1.5

🚀 What’s New

See the NEWS file for the changelog.

• 0.1.5 (#520) @DominiqueMakowski
• Rerun examples and tutorials (#577) @Tam-Pham
• No warning for signalpsd: default minfreq (#574) @Tam-Pham
• eeg_power() (#573) @DominiqueMakowski
• Remove unused args in hrv_time (#575) @Tam-Pham
• Noise simulation (#571) @DominiqueMakowski
• Complexity hotfixes (#567) @DominiqueMakowski
• More fractal and entropy indices (#559) @DominiqueMakowski
• EEG: source reconstruction utilities (#564) @DominiqueMakowski
• Overhaul of the support for complexity indices (#527) @zen-juen
• sanitize search duration in delineate by HR (#522) @Tam-Pham
• Functions to account for more mne features (#551) @zen-juen
• Compute respiration rate based on troughs (#550) @zen-juen
• Add and clarify RSP features (#536) @zen-juen
• Distinguish intervals from peaks in hrv_*() (#535) @zen-juen
• [Fix] Signalfixpeaksneurokit (#538) @pfilo8
• Update AUTHORS.rst (#539) @pfilo8
• Sanitize HRV outputs (#525) @Tam-Pham
• hrv_time() does not throw an ValueError for input array with constant… (#537) @richrobe
• [Fix] interpolatebig method from signal_fixpeaks method (#530) @pfilo8
• Sanitize emg offset indices (#526) @zen-juen
• Format complexity outputs (#521) @zen-juen

👏 Thanks to

@DominiqueMakowski, @Tam-Pham, @pfilo8, @richrobe, @zen-juen and Patryk Wielopolski

What's Changed

• fix fractal_higuchi by @zen-juen in https://github.com/neuropsychology/NeuroKit/pull/505
• Optimizing parameters for a list of signals by @Tam-Pham in https://github.com/neuropsychology/NeuroKit/pull/509
• Sanitize maxbeat before creating window for dfa alpha2 by @Tam-Pham in https://github.com/neuropsychology/NeuroKit/pull/512
• 0.1.4.1 by @DominiqueMakowski in https://github.com/neuropsychology/NeuroKit/pull/504
• Format complexity outputs by @zen-juen in https://github.com/neuropsychology/NeuroKit/pull/521
• Sanitize emg offset indices by @zen-juen in https://github.com/neuropsychology/NeuroKit/pull/526
• [Fix] interpolatebig method from signal_fixpeaks method by @pfilo8 in https://github.com/neuropsychology/NeuroKit/pull/530
• hrv_time() does not throw an ValueError for input array with constant… by @richrobe in https://github.com/neuropsychology/NeuroKit/pull/537
• Sanitize HRV outputs by @Tam-Pham in https://github.com/neuropsychology/NeuroKit/pull/525
• Update AUTHORS.rst by @pfilo8 in https://github.com/neuropsychology/NeuroKit/pull/539
• [Fix] Signalfixpeaksneurokit by @pfilo8 in https://github.com/neuropsychology/NeuroKit/pull/538
• Distinguish intervals from peaks in hrv_*() by @zen-juen in https://github.com/neuropsychology/NeuroKit/pull/535
• Add and clarify RSP features by @zen-juen in https://github.com/neuropsychology/NeuroKit/pull/536
• Compute respiration rate based on troughs by @zen-juen in https://github.com/neuropsychology/NeuroKit/pull/550
• Functions to account for more mne features by @zen-juen in https://github.com/neuropsychology/NeuroKit/pull/551
• sanitize search duration in delineate by HR by @Tam-Pham in https://github.com/neuropsychology/NeuroKit/pull/522
• Overhaul of the support for complexity indices by @zen-juen in https://github.com/neuropsychology/NeuroKit/pull/527
• EEG: source reconstruction utilities by @DominiqueMakowski in https://github.com/neuropsychology/NeuroKit/pull/564
• More fractal and entropy indices by @DominiqueMakowski in https://github.com/neuropsychology/NeuroKit/pull/559
• Complexity hotfixes by @DominiqueMakowski in https://github.com/neuropsychology/NeuroKit/pull/567
• Noise simulation by @DominiqueMakowski in https://github.com/neuropsychology/NeuroKit/pull/571
• Remove unused args in hrv_time by @Tam-Pham in https://github.com/neuropsychology/NeuroKit/pull/575
• eeg_power() by @DominiqueMakowski in https://github.com/neuropsychology/NeuroKit/pull/573
• No warning for signalpsd: default minfreq by @Tam-Pham in https://github.com/neuropsychology/NeuroKit/pull/574
• Rerun examples and tutorials by @Tam-Pham in https://github.com/neuropsychology/NeuroKit/pull/577
• 0.1.5 by @DominiqueMakowski in https://github.com/neuropsychology/NeuroKit/pull/520

New Contributors

• @pfilo8 made their first contribution in https://github.com/neuropsychology/NeuroKit/pull/530

Full Changelog: https://github.com/neuropsychology/NeuroKit/compare/v0.1.4...v0.1.5

- Python
Published by github-actions[bot] over 4 years ago

neurokit2 - 0.1.4.1

🚀 What’s New

See the NEWS file for the changelog.

• 0.1.4.1 (#504) @DominiqueMakowski
• Sanitize maxbeat before creating window for dfa alpha2 (#512) @Tam-Pham
• Optimizing parameters for a list of signals (#509) @Tam-Pham
• fix fractal_higuchi (#505) @zen-juen

👏 Thanks to

@DominiqueMakowski, @Tam-Pham and @zen-juen

- Python
Published by github-actions[bot] over 4 years ago

neurokit2 - 0.1.4

🚀 What’s New

See the NEWS file for the changelog.

• dev (#487) @DominiqueMakowski
• Add new hrv indices into hrvtime and hrvnonlinear (#503) @Tam-Pham
• More complexity indices (#499) @zen-juen
• Fix download error when downloading mne datasets (#502) @zen-juen
• Fix geometric indices of HRV (#501) @Tam-Pham
• DFA fix from LRydin's fork (#490) @Tam-Pham
• convert intervals to peaks (#494) @zen-juen
• Fractal and multifractal measures (#493) @LRydin
• docs typo: pamtompkins -> pantompkins (#486) @dragove

👏 Thanks to

@DominiqueMakowski, @LRydin, @Tam-Pham, @dragove and @zen-juen

- Python
Published by github-actions[bot] over 4 years ago

neurokit2 - 0.1.3

🚀 What’s New

See the NEWS file for the changelog.

• 0.1.3 (#455) @DominiqueMakowski
• Add and fix ecg_delineate features (#483) @zen-juen
• Bug fix ecgfindpeaksrodrigues (#478) @TiagoTostas
• clean missing data and sanitize epochs column types (#470) @zen-juen
• add sd features in eventrelated functions (#471) @zen-juen
• Add labelling to subepochs (#468) @zen-juen
• fix epochs_end from duration of events (#461) @Tam-Pham
• A parameter lost in eog_plot (#460) @SongzhouYang
• Fix rare peak-inside-padding issues in ecgfindpeaks_kalidas (#456) @jukka

👏 Thanks to

@DominiqueMakowski, @JanCBrammer, @SongzhouYang, @Tam-Pham, @TiagoTostas, @jukka and @zen-juen

- Python
Published by github-actions[bot] over 4 years ago

neurokit2 - 0.1.2

🚀 What’s New

See the NEWS file for the changelog.

• 0.1.2 (#427) @Tam-Pham
• Optimize ecgfindpeaks_peakdetect (#450) @jukka
• Add sub-epoch option for ECG and RSP event-related analysis (#454) @Tam-Pham
• Add myself to the list of contributors (#451) @jukka
• [feature] ecg quality method by zhao2018 (#410) @DominiqueMakowski
• Update ecg_quality.py (#439) @maxyongg
• Boxcar (#432) @jukka
• Fixed issue #421: ragged nested sequences (#424) @yywangvr
• Optimize ecgfindpeaks_MWA (#423) @jukka
• 0.1.1 (#411) @DominiqueMakowski
• [Feature] Updated Error Bar Request (#415) @BrandonReno

👏 Thanks to

@BrandonReno, @DominiqueMakowski, @JanCBrammer, @Tam-Pham, @jukka, @maxyongg, @yywangvr and @zen-juen

- Python
Published by github-actions[bot] over 4 years ago

neurokit2 - 0.1.0

🚀 What’s New

NeuroKit2 has been published (https://doi.org/10.3758/s13428-020-01516-y)!

• 0.1.0 🎉 (#389) @DominiqueMakowski
• [Fix] Fix signal_zerocrossings indexing issues (#399) @jluby
• Stop signal_fixpeaks iteration when number of artifacts stops decreasing (#400) @jukka
• [Fix] Fix offset bug in neurokit2/ecg/ecg_delineate.py (#398) @jluby
• fix error when len(candidate_offsets)==0 (#397) @6112562a
• Fix casting to np.int64 (#396) @nx10
• Fixed typo in code sample (#390) @laurague

👏 Thanks to

@6112562a, @DominiqueMakowski, @JanCBrammer, @Tam-Pham, @jluby, @jukka, @laurague, @nx10 and @zen-juen

- Python
Published by github-actions[bot] about 5 years ago

neurokit2 - 0.0.42

🚀 What’s New

• 0.0.42 (#373) @Tam-Pham
• Update AUTHORS.rst (#385) @csavur
• Additional affiliation (#384) @jrepifano
• Add hrstd argument to ecg_simulate (#383) @jrepifano
• signal_sanitize() added, when non-default index for pandas series cau… (#372) @csavur
• [Fix] Pygment style for jupyter (#374) @Tam-Pham

👏 Thanks to

@DominiqueMakowski, @Tam-Pham, @csavur and @jrepifano

- Python
Published by github-actions[bot] about 5 years ago

neurokit2 - 0.0.41

🚀 What’s New

• 0.0.41 (#347) @DominiqueMakowski
• input check for series when non-default index is set. (#371) @csavur
• [Feature] Add and improve microstates features (#350) @zen-juen
• [Fix] Review microstate implementations (#349) @Tam-Pham
• Update AUTHORS.rst (#348) @elaineteo2000

👏 Thanks to

@DominiqueMakowski, @JanCBrammer, @Tam-Pham, @csavur, @elaineteo2000, @sangfrois and @zen-juen

- Python
Published by github-actions[bot] over 5 years ago

neurokit2 - 0.0.40

🚀 What’s New

• 0.0.40 (#322) @DominiqueMakowski
• [Fix] Code Climate (#346) @Tam-Pham
• [Feature] EEG microstates analysis (basics) (#331) @DominiqueMakowski
• [Fix] #344 with corresponding test (#345) @awwong1
• [Feature] add new ECG peak detection method (#343) @elaineteo2000
• [Feature] Dynamic RSA (#336) @Tam-Pham
• [Feature] Add new respiration rate methods (#341) @Tam-Pham
• [Features] PPG preprocessing (#339) @elaineteo2000
• [feature] Time-frequency methods (#327) @Tam-Pham
• [Fix] corrected 'heart' with 'respiratory' in docstring (#337) @1110sillabo
• [Feature] New EDA and EMG peak and onset detection methods (#325) @zen-juen
• respiration sampling rate issue (#334) @minsooyeo
• [Improvement] Refactor all printed NeuroKit warnings into warning control (#320) @awwong1
• add new emg onset detection method (#333) @elaineteo2000

👏 Thanks to

@1110sillabo, @DominiqueMakowski, @Tam-Pham, @awwong1, @elaineteo2000, @minsooyeo and @zen-juen

- Python
Published by github-actions[bot] over 5 years ago

neurokit2 - 0.0.39

🚀 What’s New

• 0.0.39 (#289) @DominiqueMakowski
• [feature] Add Time-Frequency (#301) @Tam-Pham
• [Fix] PSD Methods (#300) @Tam-Pham
• [Fix] ecg_delineate CWT mode crash when no consecutive tp peaks found (#314) @raimonpv
• typofixdocsexamples_ecg (#318) @0reza
• [docs] Rerun all examples (#313) @zen-juen
• [Feature] add version() function to easily retrieve system info (#311) @DominiqueMakowski
• [Change] ecgrsa becomes hrvrsa (#308) @DominiqueMakowski
• [improvement] ECG Benchmarking: add 2 databases (#306) @DominiqueMakowski
• [Fix] ppg simulate (#307) @JanCBrammer
• [Feature] mne to df() (#302) @DominiqueMakowski
• ecg_intervalrelated test case, fixed contributors spacing (#305) @awwong1
• ecganalyze should pass samplingrate to ecg_intervalrelated call (#303) @awwong1
• [feature] Add EOG into bio_* functions (#299) @zen-juen
• [feature] plot blinks in eog_plot (#297) @zen-juen
• [docs] Add HRV example (#298) @zen-juen
• [CI] update style workflow (#294) @zen-juen
• [docs] Add HRV Example + Resources (#296) @zen-juen
• [docs] Use of mdinclude directive to add .md files to sphinx docs (#291) @rpanderson
• [fix] README improvements (#290) @DominiqueMakowski

👏 Thanks to

@0reza, @DominiqueMakowski, @JanCBrammer, @Tam-Pham, @awwong1, @raimonpv, @rpanderson, @zen-juen and reza

- Python
Published by github-actions[bot] over 5 years ago

neurokit2 - 0.0.38

🚀 What’s New

• 0.0.38 (#258) @DominiqueMakowski
• [feature] HRV Poincaré fixes and other non-linear HRV improvements (#282) @DominiqueMakowski
• [features] Add nk.eog_plot() (#283) @zen-juen
• [feature] PPG process pipeline (#288) @DominiqueMakowski
• [docs] README improvements (#277) @DominiqueMakowski
• [features] Improve signal_plot() (#286) @zen-juen
• [API] API of signalperiod() and signalrate() (#276) @Tam-Pham
• Attempt to fix failing CI (#280) @hungpham2511
• [feature] add new method for signal_psd() (#273) @Tam-Pham
• [feature] Blink detection improvements (#269) @DominiqueMakowski
• [CI] update test workflows (#262) @Tam-Pham
• [docs] Add ECG delineation abilities to README (#272) @zen-juen
• [CI] more pylint fixes (#266) @DominiqueMakowski
• [fix] hrv_nonlinear: changed SD2/SD1 ratio of Poincaré to SD1/SD2 (#264) @richrobe
• [feature] SSA-based Single-channel decomposition methods (#263) @DominiqueMakowski
• [feature] EOG processing: add blink detection method and cleaning methods (#260) @DominiqueMakowski
• Improve release drafter action (#259) @DominiqueMakowski

👏 Thanks to

@DominiqueMakowski, @JanCBrammer, @Tam-Pham, @hungpham2511, @richrobe, @sangfrois and @zen-juen

- Python
Published by github-actions[bot] over 5 years ago

neurokit2 - 0.0.37

🚀 What’s New

• 0.0.37 (#244) @DominiqueMakowski
• Migrate codecov to gh action (#256) @Tam-Pham
• Fixed potential bug in hrv_nonlinear.py (#252) @richrobe
• Update eda.ipynb (#251) @kassyray
• documentation action (#246) @Tam-Pham

👏 Thanks to

@DominiqueMakowski, @JanCBrammer, @Tam-Pham, @kassyray, @richrobe and @zen-juen

- Python
Published by github-actions[bot] over 5 years ago

neurokit2 - 0.0.36

🚀 What’s New

• 0.0.36 (#232) @DominiqueMakowski
• Update rsp_findpeaks.py (#234) @Mitchellb16
• Exploring Github CI (#233) @Tam-Pham

👏 Thanks to

@DominiqueMakowski, @Mitchellb16, @Tam-Pham and @zen-juen

- Python
Published by github-actions[bot] over 5 years ago

neurokit2 - 0.0.35

What’s New

• 0.0.35 (#226) @DominiqueMakowski
• 0.0.35 (Sourcery refactored) (#228) @sourcery-ai
• 0.0.35 (Sourcery refactored) (#227) @sourcery-ai
• 0.0.34 (#221) @DominiqueMakowski
• 0.0.33 (#217) @DominiqueMakowski
• Removed unused module (#220) @vansjyo
• 0.0.32 (#212) @DominiqueMakowski
• fix variable-patches (#216) @TiagoTostas
• Update ecg_findpeaks.py (#213) @TiagoTostas
• Prevent duplication of functions across modules (#211) @JanCBrammer
• dev (#209) @DominiqueMakowski
• dev (#207) @DominiqueMakowski
• dev (#201) @DominiqueMakowski
• dev (#197) @DominiqueMakowski
• Edited the draft. (#200) @JanCBrammer
• dev (0.0.27) (#195) @DominiqueMakowski
• Changes to Welch method in signal_psd() (#196) @Tam-Pham
• dev (#193) @DominiqueMakowski
• dev (#190) @DominiqueMakowski
• Pre-compute means in ecgfindpeaks_MWA (#192) @purpl3F0x
• dev (#187) @DominiqueMakowski
• dev (#184) @DominiqueMakowski
• Dev (#182) @DominiqueMakowski
• dev (#179) @DominiqueMakowski
• dev (#178) @DominiqueMakowski
• PPG systolic peak detection (#177) @JanCBrammer
• dev (#173) @DominiqueMakowski
• Dev (#168) @DominiqueMakowski
• fixing random seeds (#172) @JanCBrammer
• Small refactor of signal_distort() (#171) @JanCBrammer
• Hush up those warnings (#170) @JanCBrammer
• Proposal for PPG simulation (#165) @JanCBrammer
• dev (#163) @DominiqueMakowski
• dev (#158) @DominiqueMakowski
• binder and README for examples (#162) @sangfrois
• Revert "Dev-Francois" (#159) @DominiqueMakowski
• Dev-Francois (#157) @sangfrois
• dev (#154) @Tam-Pham
• dev (#151) @Tam-Pham
• Remove 'unmockable' modules (#153) @hungpham2511
• dev (#145) @DominiqueMakowski
• Re-implemented powerline filter (#150) @JanCBrammer
• Dev (#137) @DominiqueMakowski
• feature EMG segmentation (#143) @GanshengT
• Powerline filter (#141) @JanCBrammer
• Do not use f-string as it is not supported by python3.5 (#139) @hungpham2511
• Bugfix: wrong ecg_fixpeaks keyword argument lists (#140) @hungpham2511
• Feature: ccg delineator using Discrete Wavelet Transform (#138) @hungpham2511
• Corrected mean calculation by changing indexing (#135) @JanCBrammer
• dev (#130) @DominiqueMakowski
• dev (#119) @DominiqueMakowski
• Proposal to simplify signal interpolation (#125) @JanCBrammer
• fixed error in artifact classification (#121) @JanCBrammer
• dev (#110) @DominiqueMakowski
• dev (#103) @DominiqueMakowski
• Refactoring ecg_fixpeaks() (#109) @JanCBrammer
• Dev (#107) @sangfrois
• Proposal for heart period artifact detection and correction (#105) @JanCBrammer
• dev (#102) @DominiqueMakowski
• fix eda plot legend (#98) @DominiqueMakowski
• Dev (#97) @DominiqueMakowski
• Added inhalation and exhalation to the axis-legend (#96) @JanCBrammer
• Dev (#90) @DominiqueMakowski
• dev (#86) @DominiqueMakowski
• dev (#84) @DominiqueMakowski
• Dev (#79) @DominiqueMakowski
• dev (#76) @DominiqueMakowski
• dev (#74) @DominiqueMakowski
• dev (#73) @DominiqueMakowski
• dev (#72) @DominiqueMakowski

Thanks to

@DominiqueMakowski, @GanshengT, @JanCBrammer, @Tam-Pham, @TiagoTostas, @hungpham2511, @purpl3F0x, @sangfrois, @sourcery-ai, @sourcery-ai-bot, @vansjyo, @zen-juen and TANGansheng

- Python
Published by github-actions[bot] over 5 years ago

neurokit2 - 0.0.6

• pypi release

- Python
Published by DominiqueMakowski about 6 years ago

neurokit2 - Initial release

Testing the template.

- Python
Published by DominiqueMakowski over 6 years ago