pyopia - Version 2.0

What's Changed

• Pypi workflow by @emlynjdavies in https://github.com/SINTEF/pyopia/pull/147
• 146 separate classification module from standard dependencies by @emlynjdavies in https://github.com/SINTEF/pyopia/pull/149
• move citation.cff to root directory by @emlynjdavies in https://github.com/SINTEF/pyopia/pull/151
• update readthedocs-sphinx-search by @emlynjdavies in https://github.com/SINTEF/pyopia/pull/153
• Added missing factor 255 in converting from float to int by @nordam in https://github.com/SINTEF/pyopia/pull/155
• 163 Guide for running steps manually by @emlynjdavies in https://github.com/SINTEF/pyopia/pull/167
• make reconstruction kernel inclusive of upper limit z plane by @klarrieu in https://github.com/SINTEF/pyopia/pull/162
• Classifier debugging by @emlynjdavies in https://github.com/SINTEF/pyopia/pull/168
• move exampledata.py to pyopia module level by @emlynjdavies in https://github.com/SINTEF/pyopia/pull/171
• 182 test for classification by @emlynjdavies in https://github.com/SINTEF/pyopia/pull/185
• 189 xarray formatting of netcdf data causes error if first images have no particles by @emlynjdavies in https://github.com/SINTEF/pyopia/pull/190
• 186 pyopiacli not working for raw files updates by @emlynjdavies in https://github.com/SINTEF/pyopia/pull/194
• 192 Pass minimum_area to segmentation function by @nepstad in https://github.com/SINTEF/pyopia/pull/195
• implement option to not append STATS.nc files by @emlynjdavies in https://github.com/SINTEF/pyopia/pull/193
• 198 pyopiastatisticsmake timeseries vd makes dataframe with times upside down oldest first newest last by @emlynjdavies in https://github.com/SINTEF/pyopia/pull/206
• Version 2.0.0 by @emlynjdavies in https://github.com/SINTEF/pyopia/pull/214
• Update pypi.yml by @emlynjdavies in https://github.com/SINTEF/pyopia/pull/236
• update scikit image by @emlynjdavies in https://github.com/SINTEF/pyopia/pull/239
• move classify import out of cli and into pipeline by @emlynjdavies in https://github.com/SINTEF/pyopia/pull/247
• add guide on processing raw data by @emlynjdavies in https://github.com/SINTEF/pyopia/pull/249

New Contributors

• @nordam made their first contribution in https://github.com/SINTEF/pyopia/pull/155
• @klarrieu made their first contribution in https://github.com/SINTEF/pyopia/pull/162

Full Changelog: https://github.com/SINTEF/pyopia/compare/v1.0.0...v2.0.3

- Jupyter Notebook
Published by emlynjdavies over 1 year ago

pyopia - Version 1 Initial release

PyOPIA now uses a steps dictionary based on a toml configuration file, and saving STATS to nc (instead of h5). It is now possible to re-evaluate to re-run the analysis, based soles on the metadata contained in the STATS .nc files: notebooks/single-image-stats.ipynb

Other completed issues updated in this version:

• fixes #133
• fixes #96
• fixes #65
• fixes #139
• fixes #134

- Jupyter Notebook
Published by emlynjdavies over 2 years ago

pyopia - Pre-release for version 1

Initial pre-release

- Jupyter Notebook
Published by emlynjdavies over 2 years ago