microbial-amplicon-analysis
A lesson teaching analysis of microbial amplicon data
https://github.com/carpentries-incubator/microbial-amplicon-analysis
Science Score: 41.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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✓Committers with academic emails
1 of 3 committers (33.3%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (8.8%) to scientific vocabulary
Keywords
Repository
A lesson teaching analysis of microbial amplicon data
Basic Info
- Host: GitHub
- Owner: carpentries-incubator
- License: other
- Language: Python
- Default Branch: gh-pages
- Homepage: https://carpentries-incubator.github.io/microbial-amplicon-analysis/
- Size: 104 KB
Statistics
- Stars: 1
- Watchers: 4
- Forks: 1
- Open Issues: 6
- Releases: 0
Topics
Metadata Files
README.md
Microbial Amplicon Analysis
This module is to teach the fundamentals of microbial amplicon analysis. This analysis usually takes the form of 16S rRNA for bacterial and ITS (Internal Transcribed Spacer) DNA for fungi. Some convenient links: * The compiled version of this lesson module. * A separate lesson on metagenomic analysis is also under development.
Contributing
We welcome all contributions to improve the lesson! Maintainers will do their best to help you if you have any questions, concerns, or experience any difficulties along the way.
We'd like to ask you to familiarize yourself with our Contribution Guide and have a look at the more detailed guidelines on proper formatting, ways to render the lesson locally, and even how to write new episodes.
Please see the current list of issues for ideas for contributing to this
repository. For making your contribution, we use the GitHub flow, which is
nicely explained in the chapter Contributing to a Project in Pro Git
by Scott Chacon.
Look for the tag 
. This indicates that the maintainers will welcome a pull request fixing this issue.
Maintainer(s)
Current maintainers of this lesson are
Authors
A list of contributors to the lesson can be found in AUTHORS
Citation
To cite this lesson, please consult with CITATION
Owner
- Name: carpentries-incubator
- Login: carpentries-incubator
- Kind: organization
- Repositories: 107
- Profile: https://github.com/carpentries-incubator
Citation (CITATION)
When citing this lesson, please use the following. (Update the date as appropriate): Jason G. Wallace (ed): "Carpentries Incubator: Microbial Amplicon Analysis." Version 2021.01, Jan 2021, https://github.com/carpentries-incubator/microbial-amplicon-analysis
GitHub Events
Total
- Fork event: 2
Last Year
- Fork event: 2
Committers
Last synced: 12 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Wallace Lab | j****e@u****u | 7 |
| Dr. Jason G. Wallace | 7****l | 4 |
| Toby Hodges | t****s@g****m | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 9 months ago
All Time
- Total issues: 6
- Total pull requests: 1
- Average time to close issues: 1 day
- Average time to close pull requests: N/A
- Total issue authors: 2
- Total pull request authors: 1
- Average comments per issue: 1.67
- Average comments per pull request: 0.0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 1
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 1
- Pull request authors: 0
- Average comments per issue: 0.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- wallacelab (5)
- tobyhodges (1)
Pull Request Authors
- zkamvar (1)