numpy

The fundamental package for scientific computing with Python.

https://github.com/numpy/numpy

Science Score: 41.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
    Found CITATION.cff file
  • codemeta.json file
  • .zenodo.json file
  • DOI references
    Found 2 DOI reference(s) in README
  • Academic publication links
  • Committers with academic emails
    162 of 2032 committers (8.0%) from academic institutions
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (15.5%) to scientific vocabulary

Keywords

numpy python

Keywords from Contributors

posit unum closember numerical-methods alignment qt flexible gtk tk wx

Scientific Fields

Mathematics Computer Science - 37% confidence
Last synced: 2 days ago · JSON representation ·

Repository

The fundamental package for scientific computing with Python.

Basic Info
  • Host: GitHub
  • Owner: numpy
  • License: other
  • Language: Python
  • Default Branch: main
  • Homepage: https://numpy.org
  • Size: 172 MB
Statistics
  • Stars: 32,309
  • Watchers: 603
  • Forks: 12,529
  • Open Issues: 2,403
  • Releases: 132
Topics
numpy python
Created almost 16 years ago · Last pushed 8 days ago
Metadata Files
Readme Contributing License Citation

README.md


Powered by NumFOCUS PyPI Downloads Conda Downloads Stack Overflow Nature Paper LFX Health Score OpenSSF Scorecard Typing

NumPy is the fundamental package for scientific computing with Python.

  • Website: https://numpy.org
  • Documentation: https://numpy.org/doc
  • Mailing list: https://mail.python.org/mailman/listinfo/numpy-discussion
  • Source code: https://github.com/numpy/numpy
  • Contributing: https://numpy.org/devdocs/dev/index.html
  • Bug reports: https://github.com/numpy/numpy/issues
  • Report a security vulnerability: https://github.com/numpy/numpy/security/policy (via Tidelift)

It provides:

  • a powerful N-dimensional array object
  • sophisticated (broadcasting) functions
  • tools for integrating C/C++ and Fortran code
  • useful linear algebra, Fourier transform, and random number capabilities

Testing:

NumPy requires pytest and hypothesis. Tests can then be run after installation with:

python -c "import numpy, sys; sys.exit(numpy.test() is False)"

Code of Conduct

NumPy is a community-driven open source project developed by a diverse group of contributors. The NumPy leadership has made a strong commitment to creating an open, inclusive, and positive community. Please read the NumPy Code of Conduct for guidance on how to interact with others in a way that makes our community thrive.

Call for Contributions

The NumPy project welcomes your expertise and enthusiasm!

Small improvements or fixes are always appreciated. If you are considering larger contributions to the source code, please contact us through the mailing list first.

Writing code isn’t the only way to contribute to NumPy. You can also: - review pull requests - help us stay on top of new and old issues - develop tutorials, presentations, and other educational materials - maintain and improve our website - develop graphic design for our brand assets and promotional materials - translate website content - help with outreach and onboard new contributors - write grant proposals and help with other fundraising efforts

For more information about the ways you can contribute to NumPy, visit our website. If you’re unsure where to start or how your skills fit in, reach out! You can ask on the mailing list or here, on GitHub, by opening a new issue or leaving a comment on a relevant issue that is already open.

Our preferred channels of communication are all public, but if you’d like to speak to us in private first, contact our community coordinators at numpy-team@googlegroups.com or on Slack (write numpy-team@googlegroups.com for an invitation).

We also have a biweekly community call, details of which are announced on the mailing list. You are very welcome to join.

If you are new to contributing to open source, this guide helps explain why, what, and how to successfully get involved.

Owner

  • Name: NumPy
  • Login: numpy
  • Kind: organization

Citation (CITATION.bib)

@ARTICLE{2020NumPy-Array,
  author  = {Harris, Charles R. and Millman, K. Jarrod and
            van der Walt, Stéfan J and Gommers, Ralf and
            Virtanen, Pauli and Cournapeau, David and
            Wieser, Eric and Taylor, Julian and Berg, Sebastian and
            Smith, Nathaniel J. and Kern, Robert and Picus, Matti and
            Hoyer, Stephan and van Kerkwijk, Marten H. and
            Brett, Matthew and Haldane, Allan and
            Fernández del Río, Jaime and Wiebe, Mark and
            Peterson, Pearu and Gérard-Marchant, Pierre and
            Sheppard, Kevin and Reddy, Tyler and Weckesser, Warren and
            Abbasi, Hameer and Gohlke, Christoph and
            Oliphant, Travis E.},
  title   = {Array programming with {NumPy}},
  journal = {Nature},
  year    = {2020},
  volume  = {585},
  pages   = {357–362},
  doi     = {10.1038/s41586-020-2649-2}
}

Papers & Mentions

Total mentions: 831

Global Property Prediction: A Benchmark Study on Open-Source, Perovskite-like Datasets
Last synced: 2 days ago
Synthetic Lateral Inhibition in Periodic Pattern Forming Microbial Colonies
Last synced: 2 days ago
Are the St John's wort Hyp-1 superstructures different?
Last synced: 2 days ago
RNA binding proteins co-localize with small tau inclusions in tauopathy
Last synced: 2 days ago
A Biomimetic Approach toward Enhancing Angiogenesis: Recombinantly Expressed Domain V of Human Perlecan Is a Bioactive Molecule That Promotes Angiogenesis and Vascularization of Implanted Biomaterials
Last synced: 2 days ago
An open-source software ecosystem for the interactive exploration of ultrafast electron scattering data
Last synced: 2 days ago
The antagonistic pleiotropy of insulin‐like growth factor 1
Last synced: 2 days ago
Interpretation and approximation tools for big, dense Markov chain transition matrices in population genetics
Last synced: 2 days ago
Need for speed: evaluation of dilute and shoot-mass spectrometry for accelerated metabolic phenotyping in bioprocess development
Last synced: 2 days ago
Action Recognition Using a Spatial-Temporal Network for Wild Felines
Last synced: 2 days ago
Predicting Subclinical Ketosis in Dairy Cows Using Machine Learning Techniques
Last synced: 2 days ago
Automation of Workplace Lifting Hazard Assessment for Musculoskeletal Injury Prevention
Last synced: 2 days ago
Long-term antimicrobial effectiveness of a silver-impregnated foil on high-touch hospital surfaces in patient rooms
Last synced: 2 days ago
Vitamin C Supplementation in Healthy Individuals Leads to Shifts of Bacterial Populations in the Gut—A Pilot Study
Last synced: 2 days ago
Digitally deconstructing leaves in 3D using X‐ray microcomputed tomography and machine learning
Last synced: 2 days ago
A risk factor analysis of complications after surgery for vulvar cancer
Last synced: 2 days ago
Quantiprot - a Python package for quantitative analysis of protein sequences
Last synced: 2 days ago
PBHoney: identifying genomic variants via long-read discordance and interrupted mapping
Last synced: 2 days ago
DI2: prior-free and multi-item discretization of biological data and its applications
Last synced: 2 days ago
PyBSASeq: a simple and effective algorithm for bulked segregant analysis with whole-genome sequencing data
Last synced: 2 days ago
affy2sv: an R package to pre-process Affymetrix CytoScan HD and 750K arrays for SNP, CNV, inversion and mosaicism calling
Last synced: 2 days ago
Substitution matrix based color schemes for sequence alignment visualization
Last synced: 2 days ago
PartSeg: a tool for quantitative feature extraction from 3D microscopy images for dummies
Last synced: 2 days ago
Computational enhancer prediction: evaluation and improvements
Last synced: 2 days ago
WASABI: a dynamic iterative framework for gene regulatory network inference
Last synced: 2 days ago
Moiety modeling framework for deriving moiety abundances from mass spectrometry measured isotopologues
Last synced: 2 days ago
C3: connect separate connected components to form a succinct disease module
Last synced: 2 days ago
PRS-on-Spark (PRSoS): a novel, efficient and flexible approach for generating polygenic risk scores
Last synced: 2 days ago
pyHIVE, a health-related image visualization and engineering system using Python
Last synced: 2 days ago
RhoTermPredict: an algorithm for predicting Rho-dependent transcription terminators based on Escherichia coli, Bacillus subtilis and Salmonella enterica databases
Last synced: 2 days ago
Accurate plant pathogen effector protein classification ab initio with deepredeff: an ensemble of convolutional neural networks
Last synced: 2 days ago
Comprehensive machine-learning-based analysis of microRNA–target interactions reveals variable transferability of interaction rules across species
Last synced: 2 days ago
PyMix - The Python mixture package - a tool for clustering of heterogeneous biological data
Last synced: 2 days ago
Y-LineageTracker: a high-throughput analysis framework for Y-chromosomal next-generation sequencing data
Last synced: 2 days ago
SV-Pop: population-based structural variant analysis and visualization
Last synced: 2 days ago
MHCSeqNet: a deep neural network model for universal MHC binding prediction
Last synced: 2 days ago
QTrim: a novel tool for the quality trimming of sequence reads generated using the Roche/454 sequencing platform
Last synced: 2 days ago
PyGNA: a unified framework for geneset network analysis
Last synced: 2 days ago
GECO: gene expression clustering optimization app for non-linear data visualization of patterns
Last synced: 2 days ago
Implementation of a methodology for determining elastic properties of lipid assemblies from molecular dynamics simulations
Last synced: 2 days ago
ICEKAT: an interactive online tool for calculating initial rates from continuous enzyme kinetic traces
Last synced: 2 days ago
InstantDL: an easy-to-use deep learning pipeline for image segmentation and classification
Last synced: 2 days ago
BAGEL: a computational framework for identifying essential genes from pooled library screens
Last synced: 2 days ago
Biotite: a unifying open source computational biology framework in Python
Last synced: 2 days ago
De novo Nanopore read quality improvement using deep learning
Last synced: 2 days ago
YSMR: a video tracking and analysis program for bacterial motility
Last synced: 2 days ago
The Coronavirus Network Explorer: mining a large-scale knowledge graph for effects of SARS-CoV-2 on host cell function
Last synced: 2 days ago
SAPPHIRE: a neural network based classifier for σ70 promoter prediction in Pseudomonas
Last synced: 2 days ago
Tremor assessment using smartphone sensor data and fuzzy reasoning
Last synced: 2 days ago
ETE: a python Environment for Tree Exploration
Last synced: 2 days ago
Machine learning predicts nucleosome binding modes of transcription factors
Last synced: 2 days ago
FANTOM: Functional and taxonomic analysis of metagenomes
Last synced: 2 days ago
VISPR-online: a web-based interactive tool to visualize CRISPR screening experiments
Last synced: 2 days ago
Native structure-based modeling and simulation of biomolecular systems per mouse click
Last synced: 2 days ago
Domain similarity based orthology detection
Last synced: 2 days ago
Biomedical document triage using a hierarchical attention-based capsule network
Last synced: 2 days ago
Repliscan: a tool for classifying replication timing regions
Last synced: 2 days ago
Hypercluster: a flexible tool for parallelized unsupervised clustering optimization
Last synced: 2 days ago
An interpretable framework for clustering single-cell RNA-Seq datasets
Last synced: 2 days ago
Kiwi: a tool for integration and visualization of network topology and gene-set analysis
Last synced: 2 days ago
CloneSifter: enrichment of rare clones from heterogeneous cell populations
Last synced: 2 days ago
VARSCOT: variant-aware detection and scoring enables sensitive and personalized off-target detection for CRISPR-Cas9
Last synced: 2 days ago
Thresholds and timing of pre-operative thrombocytosis and ovarian cancer survival: analysis of laboratory measures from electronic medical records
Last synced: 2 days ago
An interplay of resource availability, population size and mutation rate potentiates the evolution of metabolic signaling
Last synced: 2 days ago
Gastric bypass surgery reveals independency of obesity and diabetes melitus type 2
Last synced: 2 days ago
Minimal tool set for a prokaryotic circadian clock
Last synced: 2 days ago
Rare sex or out of reach equilibrium? The dynamics of F IS in partially clonal organisms
Last synced: 2 days ago
Fluorescent amplification for next generation sequencing (FA-NGS) library preparation
Last synced: 2 days ago
Genome analysis of Diploscapter coronatus: insights into molecular peculiarities of a nematode with parthenogenetic reproduction
Last synced: 2 days ago
OMGene: mutual improvement of gene models through optimisation of evolutionary conservation
Last synced: 2 days ago
A first insight into the genome of Prototheca wickerhamii, a major causative agent of human protothecosis
Last synced: 2 days ago
Identification of cis-regulatory motifs in first introns and the prediction of intron-mediated enhancement of gene expression in Arabidopsis thaliana
Last synced: 2 days ago
Machine learning based imputation techniques for estimating phylogenetic trees from incomplete distance matrices
Last synced: 2 days ago
Plastid: nucleotide-resolution analysis of next-generation sequencing and genomics data
Last synced: 2 days ago
CNCC: an analysis tool to determine genome-wide DNA break end structure at single-nucleotide resolution
Last synced: 2 days ago
Leveraging global gene expression patterns to predict expression of unmeasured genes
Last synced: 2 days ago
Interferon signaling in ascites-associated macrophages is linked to a favorable clinical outcome in a subgroup of ovarian carcinoma patients
Last synced: 2 days ago
ALFA: annotation landscape for aligned reads
Last synced: 2 days ago
GHOST: global hepatitis outbreak and surveillance technology
Last synced: 2 days ago
Shoelaces: an interactive tool for ribosome profiling processing and visualization
Last synced: 2 days ago
SCReadCounts: estimation of cell-level SNVs expression from scRNA-seq data
Last synced: 2 days ago
Predicting RNA hyper-editing with a novel tool when unambiguous alignment is impossible
Last synced: 2 days ago
A deep neural network approach to predicting clinical outcomes of neuroblastoma patients
Last synced: 2 days ago
Achieving GWAS with homomorphic encryption
Last synced: 2 days ago
Sensitivity analysis for interpretation of machine learning based segmentation models in cardiac MRI
Last synced: 2 days ago
A predictive analytics model for differentiating between transient ischemic attacks (TIA) and its mimics
Last synced: 2 days ago
Transformers-sklearn: a toolkit for medical language understanding with transformer-based models
Last synced: 2 days ago
Development and validation of classifiers and variable subsets for predicting nursing home admission
Last synced: 2 days ago
Identifying clinically important COPD sub-types using data-driven approaches in primary care population based electronic health records
Last synced: 2 days ago
A high-level, simulator independent, Python library for simulating small networks of multicompartmental neurons
Last synced: 2 days ago
The impact of resource competition on neurite outgrowth
Last synced: 2 days ago
pypet: a python toolkit for simulations and numerical experiments
Last synced: 2 days ago
eToxPred: a machine learning-based approach to estimate the toxicity of drug candidates
Last synced: 2 days ago
DivA: detection of non-homologous and very divergent regions in protein sequence alignments
Last synced: 2 days ago
FASTQSim: platform-independent data characterization and in silico read generation for NGS datasets
Last synced: 2 days ago
A substrate for modular, extensible data-visualization
Last synced: 2 days ago
Exploration of a diversity of computational and statistical measures of association for genome-wide genetic studies
Last synced: 2 days ago
In Situ Quantification of Polyhydroxybutyrate in Photobioreactor Cultivations of Synechocystis sp. Using an Ultrasound-Enhanced ATR-FTIR Spectroscopy Probe
Last synced: 2 days ago
An Open-Source COVID-19 CT Dataset with Automatic Lung Tissue Classification for Radiomics
Last synced: 2 days ago
eMZed: an open source framework in Python for rapid and interactive development of LC/MS data analysis workflows
Last synced: 2 days ago
Haplotype-based membership inference from summary genomic data
Last synced: 2 days ago
<i>Coolpup.py:</i> versatile pile-up analysis of Hi-C data
Last synced: 2 days ago
Methplotlib: analysis of modified nucleotides from nanopore sequencing
Last synced: 2 days ago
NanoPack: visualizing and processing long-read sequencing data
Last synced: 2 days ago
Solubility-Weighted Index: fast and accurate prediction of protein solubility
Last synced: 2 days ago
AlphaFamImpute: high-accuracy imputation in full-sib families from genotype-by-sequencing data
Last synced: 2 days ago
Expected 10-anonymity of HyperLogLog sketches for federated queries of clinical data repositories
Last synced: 2 days ago
FastSpar: rapid and scalable correlation estimation for compositional data
Last synced: 2 days ago
Activating and inhibiting connections in biological network dynamics
Last synced: 2 days ago
Common pathways and functional profiles reveal underlying patterns in Breast, Kidney and Lung cancers
Last synced: 2 days ago
Optimal length of R–R interval segment window for Lorenz plot detection of paroxysmal atrial fibrillation by machine learning
Last synced: 2 days ago
Dual-view light-sheet imaging through a tilted glass interface using a deformable mirror
Last synced: 2 days ago
The Effect of Different Pollination on the Expression of Dangshan Su Pear MicroRNA
Last synced: 2 days ago
Long Noncoding RNA Identification: Comparing Machine Learning Based Tools for Long Noncoding Transcripts Discrimination
Last synced: 2 days ago
Machine Learning Algorithms Identify Pathogen-Specific Biomarkers of Clinical and Metabolomic Characteristics in Septic Patients with Bacterial Infections
Last synced: 2 days ago
Improving Chemical Autoencoder Latent Space and Molecular De Novo Generation Diversity with Heteroencoders
Last synced: 2 days ago
High-Throughput Identification of Adapters in Single-Read Sequencing Data
Last synced: 2 days ago
CONAN: A Tool to Decode Dynamical Information from Molecular Interaction Maps
Last synced: 2 days ago
Hi-C analysis: from data generation to integration
Last synced: 2 days ago
Mechanism of lignin inhibition of enzymatic biomass deconstruction
Last synced: 2 days ago
Differential patterns of age‐related cortical and subcortical functional connectivity in 6‐to‐10 year old children: A connectome‐wide association study
Last synced: 2 days ago
Predictive Values of Location and Volumetric MRI Injury Patterns for Neurodevelopmental Outcomes in Hypoxic-Ischemic Encephalopathy Neonates
Last synced: 2 days ago
Dissecting whole-brain conduction delays through MRI microstructural measures
Last synced: 2 days ago
RNA2HLA: HLA-based quality control of RNA-seq datasets
Last synced: 2 days ago
Graphics processing units in bioinformatics, computational biology and systems biology
Last synced: 2 days ago
Quantitative Backscattered Electron Imaging of Bone Using a Thermionic or a Field Emission Electron Source
Last synced: 2 days ago
Epigenetic Characteristics of Human Subtelomeres Vary in Cells Utilizing the Alternative Lengthening of Telomeres (ALT) Pathway
Last synced: 2 days ago
On the sensitivity of quantitative susceptibility mapping for measuring trabecular bone density
Last synced: 2 days ago
Applying a Chemogeographic Strategy for Natural Product Discovery from the Marine Cyanobacterium Moorena bouillonii
Last synced: 2 days ago
Predicting Blood–Brain Barrier Permeability of Marine-Derived Kinase Inhibitors Using Ensemble Classifiers Reveals Potential Hits for Neurodegenerative Disorders
Last synced: 2 days ago
A Study to Derive Equivalent Mechanical Properties of Porous Materials with Orthotropic Elasticity
Last synced: 2 days ago
Lipid Diffusion in Supported Lipid Bilayers: A Comparison between Line-Scanning Fluorescence Correlation Spectroscopy and Single-Particle Tracking
Last synced: 2 days ago
Impact framework: A python package for writing data analysis workflows to interpret microbial physiology
Last synced: 2 days ago
Metabolite Profile of Treatment-Naive Metabolic Syndrome Subjects in Relation to Cardiovascular Disease Risk
Last synced: 2 days ago
A Computational Framework for High-Throughput Isotopic Natural Abundance Correction of Omics-Level Ultra-High Resolution FT-MS Datasets
Last synced: 2 days ago
Hyperpolarized Dihydroxyacetone Is a Sensitive Probe of Hepatic Gluconeogenic State
Last synced: 2 days ago
Correlation of Metabolic Profiles of Plasma and Cerebrospinal Fluid of High-Grade Glioma Patients
Last synced: 2 days ago
Migrating from partial least squares discriminant analysis to artificial neural networks: a comparison of functionally equivalent visualisation and feature contribution tools using jupyter notebooks
Last synced: 2 days ago
Construction of an instant structured illumination microscope
Last synced: 2 days ago
Sharing Programming Resources Between Bio* Projects
Last synced: 2 days ago
Quantitative Microdialysis: Experimental Protocol and Software for Small Molecule Protein Affinity Determination and for Exclusion of Compounds with Poor Physicochemical Properties
Last synced: 2 days ago
Optimization methods for the imputation of missing values in Educational Institutions Data
Last synced: 2 days ago
Using the max-p regions problem algorithm to define regions for energy system modelling
Last synced: 2 days ago
Correlation between bacterial G+C content, genome size and the G+C content of associated plasmids and bacteriophages
Last synced: 2 days ago
Identifying novel β-lactamase substrate activity through in silico prediction of antimicrobial resistance
Last synced: 2 days ago
Transmission, adaptation and geographical spread of the Pseudomonas aeruginosa Liverpool epidemic strain
Last synced: 2 days ago
A multi-OMIC characterisation of biodegradation and microbial community succession within the PET plastisphere
Last synced: 2 days ago
Understanding microbial community dynamics to improve optimal microbiome selection
Last synced: 2 days ago
Hill-based dissimilarity indices and null models for analysis of microbial community assembly
Last synced: 2 days ago
Molecular Evolutionary Dynamics of Energy Limited Microorganisms
Last synced: 2 days ago
Both maintenance and avoidance of RNA-binding protein interactions constrain coding sequence evolution
Last synced: 2 days ago
Discovery of Ongoing Selective Sweeps within<i>Anopheles</i>Mosquito Populations Using Deep Learning
Last synced: 2 days ago
A Recent Whole-Genome Duplication Divides Populations of a Globally Distributed Microsporidian
Last synced: 2 days ago
The Genetic Background Modulates the Evolution of Fluoroquinolone-Resistance in Mycobacterium tuberculosis
Last synced: 2 days ago
Systems analysis identifies miR-29b regulation of invasiveness in melanoma
Last synced: 2 days ago
Nascent Transcript Folding Plays a Major Role in Determining RNA Polymerase Elongation Rates
Last synced: 2 days ago
Functional Translatome Proteomics Reveal Converging and Dose-Dependent Regulation by mTORC1 and eIF2α
Last synced: 2 days ago
Prediction of Protein Complexes in Trypanosoma brucei by Protein Correlation Profiling Mass Spectrometry and Machine Learning
Last synced: 2 days ago
Covariation of Peptide Abundances Accurately Reflects Protein Concentration Differences
Last synced: 2 days ago
The role of introgression and ecotypic parallelism in delineating intraspecific conservation units
Last synced: 2 days ago
Substructural Connectivity Fingerprint and Extreme Entropy Machines—A New Method of Compound Representation and Analysis
Last synced: 2 days ago
Fentanyl Family at the Mu-Opioid Receptor: Uniform Assessment of Binding and Computational Analysis
Last synced: 2 days ago
Deep Learning for Virtual Histological Staining of Bright-Field Microscopic Images of Unlabeled Carotid Artery Tissue
Last synced: 2 days ago
Measuring glycolytic flux in single yeast cells with an orthogonal synthetic biosensor
Last synced: 2 days ago
Mammalian gene expression variability is explained by underlying cell state
Last synced: 2 days ago
A method for high‐throughput production of sequence‐verified <scp>DNA</scp> libraries and strain collections
Last synced: 2 days ago
Phosphoproteomics identifies microglial Siglec‐F inflammatory response during neurodegeneration
Last synced: 2 days ago
Joint cell segmentation and cell type annotation for spatial transcriptomics
Last synced: 2 days ago
Application of alternative &lt;i&gt;de novo&lt;/i&gt; motif recognition models for analysis of structural heterogeneity of transcription factor binding sites: a case study of FOXA2 binding sites
Last synced: 2 days ago
TreeTime: Maximum-likelihood phylodynamic analysis
Last synced: 2 days ago
Viral Metagenomic Profiling of Croatian Bat Population Reveals Sample and Habitat Dependent Diversity
Last synced: 2 days ago
Spatio-Temporal Mutational Profile Appearances of Swedish SARS-CoV-2 during the Early Pandemic
Last synced: 2 days ago
Increased zinc accumulation in mineralized osteosarcoma tissue measured by confocal synchrotron radiation micro X-ray fluorescence analysis
Last synced: 2 days ago
ACSNI: An unsupervised machine-learning tool for prediction of tissue-specific pathway components using gene expression profiles
Last synced: 2 days ago
IOCBIO Sparks detection and analysis software
Last synced: 2 days ago
COREMIC: a web-tool to search for a niche associated CORE MICrobiome
Last synced: 2 days ago
Unipro UGENE NGS pipelines and components for variant calling, RNA-seq and ChIP-seq data analyses
Last synced: 2 days ago
imGLAD: accurate detection and quantification of target organisms in metagenomes
Last synced: 2 days ago
Expansion of sandhill cranes (Grus canadensis) in east Asia during the non-breeding period
Last synced: 2 days ago
NxRepair: error correction in<i>de novo</i>sequence assembly using Nextera mate pairs
Last synced: 2 days ago
HiCEnterprise: identifying long range chromosomal contacts in Hi-C data
Last synced: 2 days ago
The effect of reverse transcription enzymes and conditions on high throughput amplicon sequencing of the 16S rRNA
Last synced: 2 days ago
Effects ofin situclimate warming on monarch caterpillar (Danaus plexippus) development
Last synced: 2 days ago
Dramatyping: a generic algorithm for detecting reasonable temporal correlations between drug administration and lab value alterations
Last synced: 2 days ago
Non-biological synthetic spike-in controls and the AMPtk software pipeline improve mycobiome data
Last synced: 2 days ago
An extensive comparison of species-abundance distribution models
Last synced: 2 days ago
jicbioimage: a tool for automated and reproducible bioimage analysis
Last synced: 2 days ago
Meta-SourceTracker: application of Bayesian source tracking to shotgun metagenomics
Last synced: 2 days ago
PromoterPredict: sequence-based modelling of<i>Escherichia coli</i>σ<sup>70</sup>promoter strength yields logarithmic dependence between promoter strength and sequence
Last synced: 2 days ago
Digital Cell Sorter (DCS): a cell type identification, anomaly detection, and Hopfield landscapes toolkit for single-cell transcriptomics
Last synced: 2 days ago
ProkEvo: an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses
Last synced: 2 days ago
<tt>phydms</tt>: software for phylogenetic analyses informed by deep mutational scanning
Last synced: 2 days ago
DeepMoney: counterfeit money detection using generative adversarial networks
Last synced: 2 days ago
Classification model for accuracy and intrusion detection using machine learning approach
Last synced: 2 days ago
Tools4MSP: an open source software package to support Maritime Spatial Planning
Last synced: 2 days ago
Provenance-and machine learning-based recommendation of parameter values in scientific workflows
Last synced: 2 days ago
Approximate spectral clustering using both reference vectors and topology of the network generated by growing neural gas
Last synced: 2 days ago
Antimicrobial Peptide against Mycobacterium Tuberculosis That Activates Autophagy Is an Effective Treatment for Tuberculosis
Last synced: 2 days ago
Domain-driven models yield better predictions at lower cost than reservoir computers in Lorenz systems
Last synced: 2 days ago
Context matters: using reinforcement learning to develop human-readable, state-dependent outbreak response policies
Last synced: 2 days ago
Attention in natural scenes: contrast affects rapid visual processing and fixations alike
Last synced: 2 days ago
Pronounced somatic bottleneck in mitochondrial DNA of human hair
Last synced: 2 days ago
Animal blood in translational research: How to adjust animal blood viscosity to the human standard
Last synced: 2 days ago
Immunogenicity of plant‐produced porcine circovirus‐like particles in mice
Last synced: 2 days ago
Subgenome evolution in allotetraploid plants
Last synced: 2 days ago
instaGraminoid, a Novel Colorimetric Method to Assess Herbicide Resistance, Identifies Patterns of Cross-Resistance in Annual Ryegrass
Last synced: 2 days ago
Rapid Quantification of Microalgae Growth with Hyperspectral Camera and Vegetation Indices
Last synced: 2 days ago
Proteomic Identification and Meta-Analysis in Salvia hispanica RNA-Seq de novo Assemblies
Last synced: 2 days ago
Development of an Image Analysis Pipeline to Estimate Sphagnum Colony Density in the Field
Last synced: 2 days ago
Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts
Last synced: 2 days ago
Assessing the replicability of spatial gene expression using atlas data from the adult mouse brain
Last synced: 2 days ago
Inferring the Chemotactic Strategy of P. putida and E. coli Using Modified Kramers-Moyal Coefficients
Last synced: 2 days ago
Interplay of multiple pathways and activity-dependent rules in STDP
Last synced: 2 days ago
Predicting mean ribosome load for 5’UTR of any length using deep learning
Last synced: 2 days ago
Nonlinear effects of intrinsic dynamics on temporal encoding in a model of avian auditory cortex
Last synced: 2 days ago
Spatial synchronization codes from coupled rate-phase neurons
Last synced: 2 days ago
Transmembrane Helix Dynamics of Bacterial Chemoreceptors Supports a Piston Model of Signalling
Last synced: 2 days ago
Degenerate T-cell Recognition of Peptides on MHC Molecules Creates Large Holes in the T-cell Repertoire
Last synced: 2 days ago
HaSAPPy: A tool for candidate identification in pooled forward genetic screens of haploid mammalian cells
Last synced: 2 days ago
A Diffusive Homeostatic Signal Maintains Neural Heterogeneity and Responsiveness in Cortical Networks
Last synced: 2 days ago
Multidimensional analysis and detection of informative features in human brain white matter
Last synced: 2 days ago
Biological network growth in complex environments: A computational framework
Last synced: 2 days ago
Bayesian inference of metabolic kinetics from genome-scale multiomics data
Last synced: 2 days ago
On the NF-Y regulome as in ENCODE (2019)
Last synced: 2 days ago
Alcoholic liver disease: A registry view on comorbidities and disease prediction
Last synced: 2 days ago
Estimating time of HIV-1 infection from next-generation sequence diversity
Last synced: 2 days ago
DEER-PREdict: Software for efficient calculation of spin-labeling EPR and NMR data from conformational ensembles
Last synced: 2 days ago
DeepHiC: A generative adversarial network for enhancing Hi-C data resolution
Last synced: 2 days ago
Maximum entropy methods for extracting the learned features of deep neural networks
Last synced: 2 days ago
pyTFM: A tool for traction force and monolayer stress microscopy
Last synced: 2 days ago
The SONATA data format for efficient description of large-scale network models
Last synced: 2 days ago
Rapid Prediction of Bacterial Heterotrophic Fluxomics Using Machine Learning and Constraint Programming
Last synced: 2 days ago
Transcriptomic correlates of electrophysiological and morphological diversity within and across excitatory and inhibitory neuron classes
Last synced: 2 days ago
A new clustering and nomenclature for beta turns derived from high-resolution protein structures
Last synced: 2 days ago
Estimation of Directed Effective Connectivity from fMRI Functional Connectivity Hints at Asymmetries of Cortical Connectome
Last synced: 2 days ago
LipidWrapper: An Algorithm for Generating Large-Scale Membrane Models of Arbitrary Geometry
Last synced: 2 days ago
The Flash-Lag Effect as a Motion-Based Predictive Shift
Last synced: 2 days ago
Metagenomic Data Utilization and Analysis (MEDUSA) and Construction of a Global Gut Microbial Gene Catalogue
Last synced: 2 days ago
Leukocyte Motility Models Assessed through Simulation and Multi-objective Optimization-Based Model Selection
Last synced: 2 days ago
PyPhi: A toolbox for integrated information theory
Last synced: 2 days ago
XDream: Finding preferred stimuli for visual neurons using generative networks and gradient-free optimization
Last synced: 2 days ago
Hybrid Models and Biological Model Reduction with PyDSTool
Last synced: 2 days ago
Deep Neural Networks as a Computational Model for Human Shape Sensitivity
Last synced: 2 days ago
scHiCTools: A computational toolbox for analyzing single-cell Hi-C data
Last synced: 2 days ago
Controlled Measurement and Comparative Analysis of Cellular Components in E. coli Reveals Broad Regulatory Changes in Response to Glucose Starvation
Last synced: 2 days ago
Spatial Pattern Dynamics of 3D Stem Cell Loss of Pluripotency via Rules-Based Computational Modeling
Last synced: 2 days ago
New methods for computational decomposition of whole-mount in situ images enable effective curation of a large, highly redundant collection of Xenopus images
Last synced: 2 days ago
Humans adapt their anticipatory eye movements to the volatility of visual motion properties
Last synced: 2 days ago
High-order epistasis shapes evolutionary trajectories
Last synced: 2 days ago
Modeling of Wnt-mediated tissue patterning in vertebrate embryogenesis
Last synced: 2 days ago
Novel Models of Visual Topographic Map Alignment in the Superior Colliculus
Last synced: 2 days ago
The importance of non-pharmaceutical interventions during the COVID-19 vaccine rollout
Last synced: 2 days ago
Passive Dendrites Enable Single Neurons to Compute Linearly Non-separable Functions
Last synced: 2 days ago
A scalable Drosophila assay for clinical interpretation of human PTEN variants in suppression of PI3K/AKT induced cellular proliferation
Last synced: 2 days ago
Genetic architecture and selective sweeps after polygenic adaptation to distant trait optima
Last synced: 2 days ago
Transcriptional progression during meiotic prophase I reveals sex-specific features and X chromosome dynamics in human fetal female germline
Last synced: 2 days ago
Major role of iron uptake systems in the intrinsic extra-intestinal virulence of the genus Escherichia revealed by a genome-wide association study
Last synced: 2 days ago
RDC complex executes a dynamic piRNA program during Drosophila spermatogenesis to safeguard male fertility
Last synced: 2 days ago
Nucleosome positions establish an extended mutation signature in melanoma
Last synced: 2 days ago
Creating artificial human genomes using generative neural networks
Last synced: 2 days ago
Causal relationships between obesity and the leading causes of death in women and men
Last synced: 2 days ago
Co-circulation and misdiagnosis led to underestimation of the 2015–2017 Zika epidemic in the Americas
Last synced: 2 days ago
Assessment of software methods for estimating protein-protein relative binding affinities
Last synced: 2 days ago
Computational Ranking of Yerba Mate Small Molecules Based on Their Predicted Contribution to Antibacterial Activity against Methicillin-Resistant Staphylococcus aureus
Last synced: 2 days ago
Modelling tick bite risk by combining random forests and count data regression models
Last synced: 2 days ago
Evolutionary Strategies of Viruses, Bacteria and Archaea in Hydrothermal Vent Ecosystems Revealed through Metagenomics
Last synced: 2 days ago
Using wearable sensors to classify subject-specific running biomechanical gait patterns based on changes in environmental weather conditions
Last synced: 2 days ago
PDBrenum: A webserver and program providing Protein Data Bank files renumbered according to their UniProt sequences
Last synced: 2 days ago
Loose social organisation of AB strain zebrafish groups in a two-patch environment
Last synced: 2 days ago
Sex-specific spatial use of the winter foraging areas by Magellanic penguins and assessment of potential conflicts with fisheries during winter dispersal
Last synced: 2 days ago
Neither per, nor tim1, nor cry2 alone are essential components of the molecular circadian clockwork in the Madeira cockroach
Last synced: 2 days ago
HappyTools: A software for high-throughput HPLC data processing and quantitation
Last synced: 2 days ago
Evaluation of pool-based testing approaches to enable population-wide screening for COVID-19
Last synced: 2 days ago
Patient-specific anatomical model for deep brain stimulation based on 7 Tesla MRI
Last synced: 2 days ago
The protein architecture in Bacteria and Archaea identifies a set of promiscuous and ancient domains
Last synced: 2 days ago
A simple model suggesting economically rational sample-size choice drives irreproducibility
Last synced: 2 days ago
The Probabilistic Convolution Tree: Efficient Exact Bayesian Inference for Faster LC-MS/MS Protein Inference
Last synced: 2 days ago
SVM2Motif—Reconstructing Overlapping DNA Sequence Motifs by Mimicking an SVM Predictor
Last synced: 2 days ago
Reaching to inhibit a prepotent response: A wearable 3-axis accelerometer kinematic analysis
Last synced: 2 days ago
MEA Viewer: A high-performance interactive application for visualizing electrophysiological data
Last synced: 2 days ago
CLEESE: An open-source audio-transformation toolbox for data-driven experiments in speech and music cognition
Last synced: 2 days ago
High SARS-CoV-2 load in the nasopharynx of patients with a mild form of COVID-19 is associated with clinical deterioration regardless of the hydroxychloroquine administration
Last synced: 2 days ago
Sulfamethoxazole Induces a Switch Mechanism in T Cell Receptors Containing TCRVβ20-1, Altering pHLA Recognition
Last synced: 2 days ago
Separating Predicted and Perceived Sensory Consequences of Motor Learning
Last synced: 2 days ago
Estimation of the Horizon in Photographed Outdoor Scenes by Human and Machine
Last synced: 2 days ago
Intrinsic dimensionality of human behavioral activity data
Last synced: 2 days ago
Data-driven coarse graining of large biomolecular structures
Last synced: 2 days ago
OrganoidTracker: Efficient cell tracking using machine learning and manual error correction
Last synced: 2 days ago
Utilization of the Naranjo scale to evaluate adverse drug reactions at a free-standing children’s hospital
Last synced: 2 days ago
Real-time computer-aided diagnosis of focal pancreatic masses from endoscopic ultrasound imaging based on a hybrid convolutional and long short-term memory neural network model
Last synced: 2 days ago
Investigation into pathophysiology of naturally occurring palatal instability and intermittent dorsal displacement of the soft palate (DDSP) in racehorses: Thyro-hyoid muscles fatigue during exercise
Last synced: 2 days ago
Protocols and Programs for High-Throughput Growth and Aging Phenotyping in Yeast
Last synced: 2 days ago
The citation advantage of linking publications to research data
Last synced: 2 days ago
Attenuation correction using 3D deep convolutional neural network for brain 18F-FDG PET/MR: Comparison with Atlas, ZTE and CT based attenuation correction
Last synced: 2 days ago
Graph diffusion distance: Properties and efficient computation
Last synced: 2 days ago
Word Decoding of Protein Amino Acid Sequences with Availability Analysis: A Linguistic Approach
Last synced: 2 days ago
MetLab: An In Silico Experimental Design, Simulation and Analysis Tool for Viral Metagenomics Studies
Last synced: 2 days ago
A promising approach for screening pulmonary hypertension based on frontal chest radiographs using deep learning: A retrospective study
Last synced: 2 days ago
Computation of the normalized cross-correlation by fast Fourier transform
Last synced: 2 days ago
Morphogene adsorption as a Turing instability regulator: Theoretical analysis and possible applications in multicellular embryonic systems
Last synced: 2 days ago
Analysis of 13,312 benthic invertebrate samples from German streams reveals minor deviations in ecological status class between abundance and presence/absence data
Last synced: 2 days ago
Advancing computational biology and bioinformatics research through open innovation competitions
Last synced: 2 days ago
Dynamics and asymmetry in the dimer of the norovirus major capsid protein
Last synced: 2 days ago
Automatic lesion detection and segmentation of 18F-FET PET in gliomas: A full 3D U-Net convolutional neural network study
Last synced: 2 days ago
City lockdown and nationwide intensive community screening are effective in controlling the COVID-19 epidemic: Analysis based on a modified SIR model
Last synced: 2 days ago
Disease Specific Productivity of American Cancer Hospitals
Last synced: 2 days ago
Preprocessing 2D data for fast convex hull computations
Last synced: 2 days ago
Community evolution on Stack Overflow
Last synced: 2 days ago
pyPaSWAS: Python-based multi-core CPU and GPU sequence alignment
Last synced: 2 days ago
A Global Clustering Algorithm to Identify Long Intergenic Non-Coding RNA - with Applications in Mouse Macrophages
Last synced: 2 days ago
An open-source software analysis package for Microspheres with Ratiometric Barcode Lanthanide Encoding (MRBLEs)
Last synced: 2 days ago
An evolutionarily conserved glycine-tyrosine motif forms a folding core in outer membrane proteins
Last synced: 2 days ago
Jscatter, a program for evaluation and analysis of experimental data
Last synced: 2 days ago
Somatic mutations render human exome and pathogen DNA more similar
Last synced: 2 days ago
Gut microbiota ecology: Biodiversity estimated from hybrid neutral-niche model increases with health status and aging
Last synced: 2 days ago
Connectivity differences between Gulf War Illness (GWI) phenotypes during a test of attention
Last synced: 2 days ago
The feasibility of using citizens to segment anatomy from medical images: Accuracy and motivation
Last synced: 2 days ago
Genotypic differences between strains of the opportunistic pathogen Corynebacterium bovis isolated from humans, cows, and rodents
Last synced: 2 days ago
Zooplankton biogeographic boundaries in the California Current System as determined from metabarcoding
Last synced: 2 days ago
The Viscoelastic Properties of Passive Eye Muscle in Primates. III: Force Elicited by Natural Elongations
Last synced: 2 days ago
Recalibrating expectations about effect size: A multi-method survey of effect sizes in the ABCD study
Last synced: 2 days ago
DeephESC 2.0: Deep Generative Multi Adversarial Networks for improving the classification of hESC
Last synced: 2 days ago
The Connectome Visualization Utility: Software for Visualization of Human Brain Networks
Last synced: 2 days ago
PyRates—A Python framework for rate-based neural simulations
Last synced: 2 days ago
Investigating the effect of dependence between conditions with Bayesian Linear Mixed Models for motif activity analysis
Last synced: 2 days ago
GLAMbox: A Python toolbox for investigating the association between gaze allocation and decision behaviour
Last synced: 2 days ago
Features spaces and a learning system for structural-temporal data, and their application on a use case of real-time communication network validation data
Last synced: 2 days ago
Activity in a Premotor Cortical Nucleus of Zebra Finches Is Locally Organized and Exhibits Auditory Selectivity in Neurons but Not in Glia
Last synced: 2 days ago
The transmission of SARS-CoV-2 is likely comodulated by temperature and by relative humidity
Last synced: 2 days ago
Democratic Population Decisions Result in Robust Policy-Gradient Learning: A Parametric Study with GPU Simulations
Last synced: 2 days ago
A comparison of machine learning models versus clinical evaluation for mortality prediction in patients with sepsis
Last synced: 2 days ago
Active Degradation Explains the Distribution of Nuclear Proteins during Cellular Senescence
Last synced: 2 days ago
The role of oxidant stress and gender in the erythrocyte arginine metabolism and ammonia management in patients with type 2 diabetes
Last synced: 2 days ago
Neurokernel: An Open Source Platform for Emulating the Fruit Fly Brain
Last synced: 2 days ago
Simulation model of CA1 pyramidal neurons reveal opposing roles for the Na+/Ca2+ exchange current and Ca2+-activated K+ current during spike-timing dependent synaptic plasticity
Last synced: 2 days ago
The Cerebellar Nodulus/Uvula Integrates Otolith Signals for the Translational Vestibulo-Ocular Reflex
Last synced: 2 days ago
Polish is quantitatively different on quartzite flakes used on different worked materials
Last synced: 2 days ago
Chromosome Territory Modeller and Viewer
Last synced: 2 days ago
Simulation of the COVID-19 epidemic on the social network of Slovenia: Estimating the intrinsic forecast uncertainty
Last synced: 2 days ago
Using the National Trauma Data Bank (NTDB) and machine learning to predict trauma patient mortality at admission
Last synced: 2 days ago
Correlation between hospitalized patients’ demographics, symptoms, comorbidities, and COVID-19 pandemic in Bahia, Brazil
Last synced: 2 days ago
Frequency Response and Gap Tuning for Nonlinear Electrical Oscillator Networks
Last synced: 2 days ago
Advancing Bag-of-Visual-Words Representations for Lesion Classification in Retinal Images
Last synced: 2 days ago
Rapid detection of fast innovation under the pressure of COVID-19
Last synced: 2 days ago
Widespread Misinterpretable ChIP-seq Bias in Yeast
Last synced: 2 days ago
Artificial intelligence may offer insight into factors determining individual TSH level
Last synced: 2 days ago
Optimizing colormaps with consideration for color vision deficiency to enable accurate interpretation of scientific data
Last synced: 2 days ago
Pan-Cancer Analysis of Mitochondria Chaperone-Client Co-Expression Reveals Chaperone Functional Partitioning
Last synced: 2 days ago
Cooperative Blockade of CK2 and ATM Kinases Drives Apoptosis in VHL-Deficient Renal Carcinoma Cells through ROS Overproduction
Last synced: 2 days ago
Regulation of Canonical Oncogenic Signaling Pathways in Cancer via DNA Methylation
Last synced: 2 days ago
Deep Learning Prediction of Cancer Prevalence from Satellite Imagery
Last synced: 2 days ago
Longitudinal Changes of Quality of Life and Hearing Following Radiosurgery for Vestibular Schwannoma
Last synced: 2 days ago
MRI-Based Radiomics Analysis for the Pretreatment Prediction of Pathologic Complete Tumor Response to Neoadjuvant Systemic Therapy in Breast Cancer Patients: A Multicenter Study
Last synced: 2 days ago
B-Helper Neutrophils in Regional Lymph Nodes Correlate with Improved Prognosis in Patients with Head and Neck Cancer
Last synced: 2 days ago
Role for the Histone Demethylase KDM4B in Rhabdomyosarcoma via CDK6 and CCNA2: Compensation by KDM4A and Apoptotic Response of Targeting Both KDM4B and KDM4A
Last synced: 2 days ago
Radiomics Model Based on Non-Contrast CT Shows No Predictive Power for Complete Pathological Response in Locally Advanced Rectal Cancer
Last synced: 2 days ago
Molecular Diversity of Midbrain Development in Mouse, Human, and Stem Cells
Last synced: 2 days ago
Whole-body integration of gene expression and single-cell morphology
Last synced: 2 days ago
The Spectrum of Asynchronous Dynamics in Spiking Networks as a Model for the Diversity of Non-rhythmic Waking States in the Neocortex
Last synced: 2 days ago
Microanatomic Distribution of Myeloid Heme Oxygenase-1 Protects against Free Radical-Mediated Immunopathology in Human Tuberculosis
Last synced: 2 days ago
Statistical Approach to Incorporating Experimental Variability into a Mathematical Model of the Voltage-Gated Na+ Channel and Human Atrial Action Potential
Last synced: 2 days ago
A Multimodal Platform for Simultaneous T-cell Imaging, Defined Activation, and Mechanobiological Characterization
Last synced: 2 days ago
Gut Microbiome Changes in Patients with Active Left-Sided Ulcerative Colitis after Fecal Microbiome Transplantation and Topical 5-aminosalicylic Acid Therapy
Last synced: 2 days ago
Kinetics of Anti-SARS-CoV-2 Antibody Responses 3 Months Post Complete Vaccination with BNT162b2; A Prospective Study in 283 Health Workers
Last synced: 2 days ago
Real-time imaging of nanoscale electrochemical Ni etching under thermal conditions
Last synced: 2 days ago
Machine learning molecular dynamics for the simulation of infrared spectra
Last synced: 2 days ago
A data-driven perspective on the colours of metal–organic frameworks
Last synced: 2 days ago
The Atomic Partial Charges Arboretum: Trying to See the Forest for the Trees
Last synced: 2 days ago
Clinical evaluation of Bladder CARE, a new epigenetic test for bladder cancer detection in urine samples
Last synced: 2 days ago
Reference frames in spatial communication for navigation and sports: an empirical study in ultimate frisbee players
Last synced: 2 days ago
Multiparametric biophysical profiling of red blood cells in malaria infection
Last synced: 2 days ago
Neocortical inhibitory interneuron subtypes are differentially attuned to synchrony- and rate-coded information
Last synced: 2 days ago
Multidimensional imaging of liver injury repair in mice reveals fundamental role of the ductular reaction
Last synced: 2 days ago
Cerebellar and hepatic alterations in ACBD5-deficient mice are associated with unexpected, distinct alterations in cellular lipid homeostasis
Last synced: 2 days ago
Pseudomonas aeruginosa adapts to octenidine via a combination of efflux and membrane remodelling
Last synced: 2 days ago
3D imaging of human organs with micrometer resolution - applied to the endocrine pancreas
Last synced: 2 days ago
Distortion of the bilayer and dynamics of the BAM complex in lipid nanodiscs
Last synced: 2 days ago
Generating Point Cloud from Measurements and Shapes Based on Convolutional Neural Network: An Application for Building 3D Human Model
Last synced: 2 days ago
Model-Based Quantification of Left Ventricular Diastolic Function in Critically Ill Patients with Atrial Fibrillation from Routine Data: A Feasibility Study
Last synced: 2 days ago
Understanding Dynamic Status Change of Hospital Stay and Cost Accumulation via Combining Continuous and Finitely Jumped Processes
Last synced: 2 days ago
DBT Masses Automatic Segmentation Using U-Net Neural Networks
Last synced: 2 days ago
Quantitative comparison of ABC membrane protein type I exporter structures in a standardized way
Last synced: 2 days ago
Two Distinct Types of Eye-Head Coupling in Freely Moving Mice
Last synced: 2 days ago
Damage-Net: A program for DNA repair meta-analysis identifies a network of novel repair genes that facilitate cancer evolution
Last synced: 2 days ago
Dataset on structure and physical properties of stable diatomic systems based on van der Waals density functional method
Last synced: 2 days ago
Dataset of sodium chloride sterile liquid in bottles for intravenous administration and fill level monitoring
Last synced: 2 days ago
Programs for the calculation of the spinodal decomposition growth rate and the spinodal gap in nanoparticles
Last synced: 2 days ago
Dataset of depressive posts in Russian language collected from social media
Last synced: 2 days ago
Dataset for supporting a modular autoinduction device for control of gene expression in Bacillus subtilis
Last synced: 2 days ago
ABCMdb reloaded: updates on mutations in ATP binding cassette proteins
Last synced: 2 days ago
Automatization and self-maintenance of the O-GlcNAcome catalog: a smart scientific database
Last synced: 2 days ago
Impact of Chronic Prostatitis on the PI-RADS Score 3: Proposal for the Addition of a Novel Binary Suffix
Last synced: 2 days ago
A Radiomics Approach to Predict the Emergence of New Hepatocellular Carcinoma in Computed Tomography for High-Risk Patients with Liver Cirrhosis
Last synced: 2 days ago
GIST and Ghrelin: To Be or Not to Be?
Last synced: 2 days ago
Forecasting COVID-19 Severity by Intelligent Optical Fingerprinting of Blood Samples
Last synced: 2 days ago
Colon Tissues Classification and Localization in Whole Slide Images Using Deep Learning
Last synced: 2 days ago
Prediction of COVID-19 with Computed Tomography Images using Hybrid Learning Techniques
Last synced: 2 days ago
Machine learning analysis of non-marital sexual violence in India
Last synced: 2 days ago
18F-FDG PET and DCE kinetic modeling and their correlations in primary NSCLC: first voxel-wise correlative analysis of human simultaneous [18F]FDG PET-MRI data
Last synced: 2 days ago
Repeatability of two semi-automatic artificial intelligence approaches for tumor segmentation in PET
Last synced: 2 days ago
Desensitisation of Notch signalling through dynamic adaptation in the nucleus
Last synced: 2 days ago
Urinary proteome profiling for stratifying patients with familial Parkinson’s disease
Last synced: 2 days ago
Open‐Source Software Analysis Tool to Investigate Space Plasma Turbulence and Nonlinear DYNamics (ODYN)
Last synced: 2 days ago
Predicting species occurrences with habitat network models
Last synced: 2 days ago
Mapping endocrine toxicity spectrum of immune checkpoint inhibitors: a disproportionality analysis using the WHO adverse drug reaction database, VigiBase
Last synced: 2 days ago
Patterns of Heart Rate Dynamics in Healthy Aging Population: Insights from Machine Learning Methods
Last synced: 2 days ago
A-DVM: A Self-Adaptive Variable Matrix Decision Variable Selection Scheme for Multimodal Problems
Last synced: 2 days ago
Multifractal Behaviors of Stock Indices and Their Ability to Improve Forecasting in a Volatility Clustering Period
Last synced: 2 days ago
Implementing a Chaotic Cryptosystem by Performing Parallel Computing on Embedded Systems with Multiprocessors
Last synced: 2 days ago
The Problem of Fairness in Synthetic Healthcare Data
Last synced: 2 days ago
Evaluation of whole-genome DNA methylation sequencing library preparation protocols
Last synced: 2 days ago
Task‐dependent responses to muscle vibration during reaching
Last synced: 2 days ago
A simplified estimate of the effective reproduction number $$R_t$$ using its relation with the doubling time and application to Italian COVID-19 data
Last synced: 2 days ago
GeNePy3D: a quantitative geometry python toolbox for bioimaging
Last synced: 2 days ago
aMatReader: Importing adjacency matrices via Cytoscape Automation
Last synced: 2 days ago
Virtual-screening workflow tutorials and prospective results from the Teach-Discover-Treat competition 2014 against malaria
Last synced: 2 days ago
The impact of community containment implementation timing on the spread of COVID-19: A simulation study
Last synced: 2 days ago
DREAMTools: a Python package for scoring collaborative challenges
Last synced: 2 days ago
Recommendations for the packaging and containerizing of bioinformatics software
Last synced: 2 days ago
The effects of an editor serving as one of the reviewers during the peer-review process
Last synced: 2 days ago
pyGeno: A Python package for precision medicine and proteogenomics
Last synced: 2 days ago
A very simple, re-executable neuroimaging publication
Last synced: 2 days ago
Rapid identification of chrysanthemum teas by computer vision and deep learning
Last synced: 2 days ago
Distinct Profiles of 50 kHz Vocalizations Differentiate Between Social Versus Non-social Reward Approach and Consumption
Last synced: 2 days ago
Human Vicarious Trial and Error Is Predictive of Spatial Navigation Performance
Last synced: 2 days ago
MARGIN: Uncovering Deep Neural Networks Using Graph Signal Analysis
Last synced: 2 days ago
Characterization and Classification of Electrophysiological Signals Represented as Visibility Graphs Using the Maxclique Graph
Last synced: 2 days ago
Riboflow: Using Deep Learning to Classify Riboswitches With ∼99% Accuracy
Last synced: 2 days ago
Agent-Based Models Predict Emergent Behavior of Heterogeneous Cell Populations in Dynamic Microenvironments
Last synced: 2 days ago
Experimental and Model-Based Analysis to Optimize Microalgal Biomass Productivity in a Pilot-Scale Tubular Photobioreactor
Last synced: 2 days ago
Getting CD19 Into Shape: Expression of Natively Folded “Difficult-to- Express” CD19 for Staining and Stimulation of CAR-T Cells
Last synced: 2 days ago
Low-Density Lipoprotein Cholesterol 4: The Notable Risk Factor of Coronary Artery Disease Development
Last synced: 2 days ago
An Integrative Network Science and Artificial Intelligence Drug Repurposing Approach for Muscle Atrophy in Spaceflight Microgravity
Last synced: 2 days ago
Single Cell Imaging of Nuclear Architecture Changes
Last synced: 2 days ago
FOntCell: Fusion of Ontologies of Cells
Last synced: 2 days ago
Customized Steady-State Constraints for Parameter Estimation in Non-Linear Ordinary Differential Equation Models
Last synced: 2 days ago
Microbiotyping the Sinonasal Microbiome
Last synced: 2 days ago
Imaging Subthreshold Voltage Oscillation With Cellular Resolution in the Inferior Olive in vitro
Last synced: 2 days ago
Heterogeneity of the Axon Initial Segment in Interneurons and Pyramidal Cells of Rodent Visual Cortex
Last synced: 2 days ago
Impaired Adaptation and Laminar Processing of the Oddball Paradigm in the Primary Visual Cortex of Fmr1 KO Mouse
Last synced: 2 days ago
Ligand Binding Induces Agonistic-Like Conformational Adaptations in Helix 12 of Progesterone Receptor Ligand Binding Domain
Last synced: 2 days ago
PepMANDIS: A Peptide Selection Tool for Designing Function-Based Targeted Proteomic Assays in Complex Microbial Systems
Last synced: 2 days ago
A Low-Rank Method for Characterizing High-Level Neural Computations
Last synced: 2 days ago
Task-Related Synaptic Changes Localized to Small Neuronal Population in Recurrent Neural Network Cortical Models
Last synced: 2 days ago
Anisotropic connectivity implements motion-based prediction in a spiking neural network
Last synced: 2 days ago
Cliques of Neurons Bound into Cavities Provide a Missing Link between Structure and Function
Last synced: 2 days ago
Learning Long Temporal Sequences in Spiking Networks by Multiplexing Neural Oscillations
Last synced: 2 days ago
Feature Detection in Visual Cortex during Different Functional States
Last synced: 2 days ago
Diffusion approximation-based simulation of stochastic ion channels: which method to use?
Last synced: 2 days ago
Machine Learning Approaches Identify Genes Containing Spatial Information From Single-Cell Transcriptomics Data
Last synced: 2 days ago
Gene Loss, Pseudogenization in Plastomes of Genus Allium (Amaryllidaceae), and Putative Selection for Adaptation to Environmental Conditions
Last synced: 2 days ago
Analysis of Single-Cell Gene Pair Coexpression Landscapes by Stochastic Kinetic Modeling Reveals Gene-Pair Interactions in Development
Last synced: 2 days ago
Successful ATAC-Seq From Snap-Frozen Equine Tissues
Last synced: 2 days ago
Time Hierarchies and Model Reduction in Canonical Non-linear Models
Last synced: 2 days ago
Screening for Combination Cancer Therapies With Dynamic Fuzzy Modeling and Multi-Objective Optimization
Last synced: 2 days ago
AI Aided Design of Epitope-Based Vaccine for the Induction of Cellular Immune Responses Against SARS-CoV-2
Last synced: 2 days ago
Variance and Scale-Free Properties of Resting-State Blood Oxygenation Level-Dependent Signal After Fear Memory Acquisition and Extinction
Last synced: 2 days ago
EEG-Based Classification of Internally- and Externally-Directed Attention in an Augmented Reality Paradigm
Last synced: 2 days ago
A Neural Network Model of Lexical-Semantic Competition During Spoken Word Recognition
Last synced: 2 days ago
Major TCR Repertoire Perturbation by Immunodominant HLA-B*44:03-Restricted CMV-Specific T Cells
Last synced: 2 days ago
Investigating Substitutions in Antibody–Antigen Complexes Using Molecular Dynamics: A Case Study with Broad-spectrum, Influenza A Antibodies
Last synced: 2 days ago
Supplemented Alkaline Phosphatase Supports the Immune Response in Patients Undergoing Cardiac Surgery: Clinical and Computational Evidence
Last synced: 2 days ago
Inferring HIV Escape Rates from Multi-Locus Genotype Data
Last synced: 2 days ago
A Distinct Esophageal mRNA Pattern Identifies Eosinophilic Esophagitis Patients With Food Impactions
Last synced: 2 days ago
Immune-Based Prediction of COVID-19 Severity and Chronicity Decoded Using Machine Learning
Last synced: 2 days ago
In-Depth Profiling of T-Cell Responsiveness to Commonly Recognized CMV Antigens in Older People Reveals Important Sex Differences
Last synced: 2 days ago
Disease Severity and Prognosis of SARS-CoV-2 Infection in Hospitalized Patients Is Not Associated With Viral Load in Nasopharyngeal Swab
Last synced: 2 days ago
Performance of Different Diagnostic PD-L1 Clones in Head and Neck Squamous Cell Carcinoma
Last synced: 2 days ago
Distinguishing Between Biological and Technical Replicates in Hypertension Research on Isolated Arteries
Last synced: 2 days ago
Human Papillomavirus Infections in Cervical Samples From HIV-Positive Women: Evaluation of the Presence of the Nonavalent HPV Genotypes and Genetic Diversity
Last synced: 2 days ago
Gut Microbiota as an Objective Measurement for Auxiliary Diagnosis of Insomnia Disorder
Last synced: 2 days ago
Germination and Growth Analysis of Streptomyces lividans at the Single-Cell Level Under Varying Medium Compositions
Last synced: 2 days ago
Why the Energy Landscape of Barnase Is Hierarchical
Last synced: 2 days ago
Computational Modeling of Lipid Metabolism in Yeast
Last synced: 2 days ago
Anncolvar: Approximation of Complex Collective Variables by Artificial Neural Networks for Analysis and Biasing of Molecular Simulations
Last synced: 2 days ago
Time-Lagged t-Distributed Stochastic Neighbor Embedding (t-SNE) of Molecular Simulation Trajectories
Last synced: 2 days ago
Short Residence Times of DNA-Bound Transcription Factors Can Reduce Gene Expression Noise and Increase the Transmission of Information in a Gene Regulation System
Last synced: 2 days ago
A spiking neural network model of self-organized pattern recognition in the early mammalian olfactory system
Last synced: 2 days ago
GABAergic and glycinergic inhibitory synaptic transmission in the ventral cochlear nucleus studied in VGAT channelrhodopsin-2 mice
Last synced: 2 days ago
VIOLA—A Multi-Purpose and Web-Based Visualization Tool for Neuronal-Network Simulation Output
Last synced: 2 days ago
Reproducible Large-Scale Neuroimaging Studies with the OpenMOLE Workflow Management System
Last synced: 2 days ago
SamuROI, a Python-Based Software Tool for Visualization and Analysis of Dynamic Time Series Imaging at Multiple Spatial Scales
Last synced: 2 days ago
PyGeNN: A Python Library for GPU-Enhanced Neural Networks
Last synced: 2 days ago
Machine learning for neuroimaging with scikit-learn
Last synced: 2 days ago
LFPy: a tool for biophysical simulation of extracellular potentials generated by detailed model neurons
Last synced: 2 days ago
The Design of SimpleITK
Last synced: 2 days ago
The Dmipy Toolbox: Diffusion MRI Multi-Compartment Modeling and Microstructure Recovery Made Easy
Last synced: 2 days ago
PyNCS: a microkernel for high-level definition and configuration of neuromorphic electronic systems
Last synced: 2 days ago
Pycabnn: Efficient and Extensible Software to Construct an Anatomical Basis for a Physiologically Realistic Neural Network Model
Last synced: 2 days ago
Draculab: A Python Simulator for Firing Rate Neural Networks With Delayed Adaptive Connections
Last synced: 2 days ago
PyParadigm—A Python Library to Build Screens in a Declarative Way
Last synced: 2 days ago
Spyke Viewer: a flexible and extensible platform for electrophysiological data analysis
Last synced: 2 days ago
Multimodal Modeling of Neural Network Activity: Computing LFP, ECoG, EEG, and MEG Signals With LFPy 2.0
Last synced: 2 days ago
NeuronDepot: keeping your colleagues in sync by combining modern cloud storage services, the local file system, and simple web applications
Last synced: 2 days ago
The UCLA multimodal connectivity database: a web-based platform for brain connectivity matrix sharing and analysis
Last synced: 2 days ago
Comparing Open-Source Toolboxes for Processing and Analysis of Spike and Local Field Potentials Data
Last synced: 2 days ago
PyRhO: A Multiscale Optogenetics Simulation Platform
Last synced: 2 days ago
Data management routines for reproducible research using the G-Node Python Client library
Last synced: 2 days ago
Graph-based active learning of agglomeration (GALA): a Python library to segment 2D and 3D neuroimages
Last synced: 2 days ago
Software for Brain Network Simulations: A Comparative Study
Last synced: 2 days ago
Seizure Forecasting Using a Novel Sub-Scalp Ultra-Long Term EEG Monitoring System
Last synced: 2 days ago
Machine Learning Models on ADC Features to Assess Brain Changes of Children With Pierre Robin Sequence
Last synced: 2 days ago
Using Base-ml to Learn Classification of Common Vestibular Disorders on DizzyReg Registry Data
Last synced: 2 days ago
HYGRIP: Full-Stack Characterization of Neurobehavioral Signals (fNIRS, EEG, EMG, Force, and Breathing) During a Bimanual Grip Force Control Task
Last synced: 2 days ago
Machine Learning in Modeling of Mouse Behavior
Last synced: 2 days ago
Automated, Efficient, and Accelerated Knowledge Modeling of the Cognitive Neuroimaging Literature Using the ATHENA Toolkit
Last synced: 2 days ago
Flexible multivariate hemodynamics fMRI data analyses and simulations with PyHRF
Last synced: 2 days ago
Effects of Gamification in BCI Functional Rehabilitation
Last synced: 2 days ago
A Machine Learning Based Dose Prediction of Lutein Supplements for Individuals With Eye Fatigue
Last synced: 2 days ago
Data-Driven Discovery of Immune Contexture Biomarkers
Last synced: 2 days ago
MYCN Drives a Tumor Immunosuppressive Environment Which Impacts Survival in Neuroblastoma
Last synced: 2 days ago
Employment of Artificial Intelligence Based on Routine Laboratory Results for the Early Diagnosis of Multiple Myeloma
Last synced: 2 days ago
Integration of Digital Pathologic and Transcriptomic Analyses Connects Tumor-Infiltrating Lymphocyte Spatial Density With Clinical Response to BRAF Inhibitors
Last synced: 2 days ago
Inferring Personalized and Race-Specific Causal Effects of Genomic Aberrations on Gleason Scores: A Deep Latent Variable Model
Last synced: 2 days ago
CEUS-Based Radiomics Can Show Changes in Protein Levels in Liver Metastases After Incomplete Thermal Ablation
Last synced: 2 days ago
Deep Shape Features for Predicting Future Intracranial Aneurysm Growth
Last synced: 2 days ago
Coupled Immunological and Biomechanical Model of Emphysema Progression
Last synced: 2 days ago
Long-Lasting Desynchronization of Plastic Neural Networks by Random Reset Stimulation
Last synced: 2 days ago
iRSVPred: A Web Server for Artificial Intelligence Based Prediction of Major Basmati Paddy Seed Varieties
Last synced: 2 days ago
Comorbid Chronic Pain and Depression: Shared Risk Factors and Differential Antidepressant Effectiveness
Last synced: 2 days ago
Development and Clinical Evaluation of an mHealth Application for Stress Management
Last synced: 2 days ago
Morning Plasma Melatonin Differences in Autism: Beyond the Impact of Pineal Gland Volume
Last synced: 2 days ago
Identification of Veterans With PTSD Based on EEG Features Collected During Sleep
Last synced: 2 days ago
Interactive Psychometrics for Autism With the Human Dynamic Clamp: Interpersonal Synchrony From Sensorimotor to Sociocognitive Domains
Last synced: 2 days ago
Fixations on objects in natural scenes: dissociating importance from salience
Last synced: 2 days ago
Extracting salient sublexical units from written texts: “Emophon,” a corpus-based approach to phonological iconicity
Last synced: 2 days ago
ExGUtils: A Python Package for Statistical Analysis With the ex-Gaussian Probability Density
Last synced: 2 days ago
Jointly structuring triadic spaces of meaning and action: book sharing from 3 months on
Last synced: 2 days ago
Creative Argumentation: When and Why People Commit the Metaphoric Fallacy
Last synced: 2 days ago
Crowdbreaks: Tracking Health Trends Using Public Social Media Data and Crowdsourcing
Last synced: 2 days ago
Combining Differential Kinematics and Optical Flow for Automatic Labeling of Continuum Robots in Minimally Invasive Surgery
Last synced: 2 days ago
Mechanisms of PTPσ-Mediated Presynaptic Differentiation
Last synced: 2 days ago
Oculomotor Remapping of Visual Information to Foveal Retinotopic Cortex
Last synced: 2 days ago
TheCellMap.org: A Web-Accessible Database for Visualizing and Mining the Global Yeast Genetic Interaction Network
Last synced: 2 days ago
Machine Learning Enables High-Throughput Phenotyping for Analyses of the Genetic Architecture of Bulliform Cell Patterning in Maize
Last synced: 2 days ago
Visualizing population structure with variational autoencoders
Last synced: 2 days ago
Automated Recognition of RNA Structure Motifs by Their SHAPE Data Signatures
Last synced: 2 days ago
Meta-Analysis of Cancer Triploidy: Rearrangements of Genome Complements in Male Human Tumors Are Characterized by XXY Karyotypes
Last synced: 2 days ago
SMITER—A Python Library for the Simulation of LC-MS/MS Experiments
Last synced: 2 days ago
Total Genotype Score Modelling of Polygenic Endurance-Power Profiles in Lithuanian Elite Athletes
Last synced: 2 days ago
Polygenic Adaptation to an Environmental Shift: Temporal Dynamics of Variation Under Gaussian Stabilizing Selection and Additive Effects on a Single Trait
Last synced: 2 days ago
Split-wrmScarlet and split-sfGFP: tools for faster, easier fluorescent labeling of endogenous proteins in <i>Caenorhabditis elegans</i>
Last synced: 2 days ago
A genomic and evolutionary approach reveals non-genetic drug resistance in malaria
Last synced: 2 days ago
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
Last synced: 2 days ago
HiCPlotter integrates genomic data with interaction matrices
Last synced: 2 days ago
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
Last synced: 2 days ago
CRISPRO: identification of functional protein coding sequences based on genome editing dense mutagenesis
Last synced: 2 days ago
CellTag Indexing: genetic barcode-based sample multiplexing for single-cell genomics
Last synced: 2 days ago
RaGOO: fast and accurate reference-guided scaffolding of draft genomes
Last synced: 2 days ago
MIA-Sig: multiplex chromatin interaction analysis by signal processing and statistical algorithms
Last synced: 2 days ago
Knowledge-primed neural networks enable biologically interpretable deep learning on single-cell sequencing data
Last synced: 2 days ago
Contiguous and stochastic CHH methylation patterns of plant DRM2 and CMT2 revealed by single-read methylome analysis
Last synced: 2 days ago
iMOKA: k-mer based software to analyze large collections of sequencing data
Last synced: 2 days ago
PEPPRO: quality control and processing of nascent RNA profiling data
Last synced: 2 days ago
Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data
Last synced: 2 days ago
Identifying chemogenetic interactions from CRISPR screens with drugZ
Last synced: 2 days ago
Improved analysis of CRISPR fitness screens and reduced off-target effects with the BAGEL2 gene essentiality classifier
Last synced: 2 days ago
Hybrid-denovo: a de novo OTU-picking pipeline integrating single-end and paired-end 16S sequence tags
Last synced: 2 days ago
ShinyLearner: A containerized benchmarking tool for machine-learning classification of tabular data
Last synced: 2 days ago
Fcirc: A comprehensive pipeline for the exploration of fusion linear and circular RNAs
Last synced: 2 days ago
DeePhage: distinguishing virulent and temperate phage-derived sequences in metavirome data with a deep learning approach
Last synced: 2 days ago
Applying the Minimal Detectable Change of a Static and Dynamic Balance Test Using a Portable Stabilometric Platform to Individually Assess Patients with Balance Disorders
Last synced: 2 days ago
: A neuroscientist's sound toolkit
Last synced: 2 days ago
MHC class I diversity predicts non-random mating in Chinese alligators (Alligator sinensis)
Last synced: 2 days ago
High‐density intracranial recordings reveal a distinct site in anterior dorsal precentral cortex that tracks perceived speech
Last synced: 2 days ago
COVID-19-CT-CXR: A Freely Accessible and Weakly Labeled Chest X-Ray and CT Image Collection on COVID-19 From Biomedical Literature
Last synced: 2 days ago
Tracing the Invasion and Expansion Characteristics of the Flatid Planthopper, Metcalfa pruinosa (Hemiptera: Flatidae), in Korea Using Mitochondrial DNA Sequences
Last synced: 2 days ago
Machine learning for early detection of sepsis: an internal and temporal validation study
Last synced: 2 days ago
CD84 is a regulator of the immunosuppressive microenvironment in Multiple Myeloma
Last synced: 2 days ago
A suite of software for processing MicroED data of extremely small protein crystals
Last synced: 2 days ago
CAPOW: a standalone program for the calculation of optimal weighting parameters for least-squares crystallographic refinements
Last synced: 2 days ago
Serial electron crystallography for structure determination and phase analysis of nanocrystalline materials
Last synced: 2 days ago
High-throughput continuous rotation electron diffraction data acquisition<i>via</i>software automation
Last synced: 2 days ago
<i>PyQCstrc.ico</i>: a computing package for structural modelling of icosahedral quasicrystals
Last synced: 2 days ago
Droplet and fibril formation of the functional amyloid Orb2
Last synced: 2 days ago
Potential of subdermal solar energy harvesting for medical device applications based on worldwide meteorological data
Last synced: 2 days ago
Amplitudes and time scales of picosecond-to-microsecond motion in proteins studied by solid-state NMR: a critical evaluation of experimental approaches and application to crystalline ubiquitin
Last synced: 2 days ago
Using Deep Neural Networks to Reconstruct Non-uniformly Sampled NMR Spectra
Last synced: 2 days ago
Statistics and pitfalls of trend analysis in cancer research: a review focused on statistical packages
Last synced: 2 days ago
Neurochemical underpinning of hemodynamic response to neuropsychiatric drugs: A meta- and cluster analysis of preclinical studies
Last synced: 2 days ago
Review of "Data Analysis with Open Source Tools" by Philipp K Janert
Last synced: 2 days ago
Bioalerts: a python library for the derivation of structural alerts from bioactivity and toxicity data sets
Last synced: 2 days ago
PyBioMed: a python library for various molecular representations of chemicals, proteins and DNAs and their interactions
Last synced: 2 days ago
TeachOpenCADD: a teaching platform for computer-aided drug design using open source packages and data
Last synced: 2 days ago
Bayesian optimization for conformer generation
Last synced: 2 days ago
AutoGrow4: an open-source genetic algorithm for de novo drug design and lead optimization
Last synced: 2 days ago
spyrmsd: symmetry-corrected RMSD calculations in Python
Last synced: 2 days ago
Incorporating structural similarity into a scoring function to enhance the prediction of binding affinities
Last synced: 2 days ago
Spinal Cord Morphology in Degenerative Cervical Myelopathy Patients; Assessing Key Morphological Characteristics Using Machine Vision Tools
Last synced: 2 days ago
Prediction of Neurologically Intact Survival in Cardiac Arrest Patients without Pre-Hospital Return of Spontaneous Circulation: Machine Learning Approach
Last synced: 2 days ago
Fecal Microbial Transplantation versus Mesalamine Enema for Treatment of Active Left-Sided Ulcerative Colitis—Results of a Randomized Controlled Trial
Last synced: 2 days ago
Efficient calculation of SAMPL4 hydration free energies using OMEGA, SZYBKI, QUACPAC, and Zap TK
Last synced: 2 days ago
Toolkits and Libraries for Deep Learning
Last synced: 2 days ago
Literary reading and eating disorders: survey evidence of therapeutic help and harm
Last synced: 2 days ago
Exploring the first Rimonabant analog-opioid peptide hybrid compound, as bivalent ligand for CB1 and opioid receptors
Last synced: 2 days ago
Drivers of within-host genetic diversity in acute infections of viruses
Last synced: 2 days ago
Comparison of virus neutralization activity and results of 10 different anti-SARS-CoV-2 serological tests in COVID-19 recovered plasma donors
Last synced: 2 days ago
Automating tasks in protein structure determination with the clipper python module
Last synced: 2 days ago
In‐depth interrogation of protein thermal unfolding data with <scp>MoltenProt</scp>
Last synced: 2 days ago
Predicting the outcome of competition when fitness inequality is variable
Last synced: 2 days ago
Strain differences in the collective behaviour of zebrafish (<i>Danio rerio</i>) in heterogeneous environment
Last synced: 2 days ago
Machine learning methods for locating re-entrant drivers from electrograms in a model of atrial fibrillation
Last synced: 2 days ago
Correlating <i>in vitro</i> performance with physico-chemical characteristics of nanofibrous scaffolds for skin tissue engineering using supervised machine learning algorithms
Last synced: 2 days ago
Methods for analysing lineage tracing datasets
Last synced: 2 days ago
Prostate cancer tumour control probability modelling for external beam radiotherapy based on multi-parametric MRI-GTV definition
Last synced: 2 days ago
Application of machine learning to understand child marriage in India
Last synced: 2 days ago
Endogenous variation in ventromedial prefrontal cortex state dynamics during naturalistic viewing reflects affective experience
Last synced: 2 days ago
Spatiotemporal database of US congressional elections, 1896–2014
Last synced: 2 days ago
A global dataset of CO2 emissions and ancillary data related to emissions for 343 cities
Last synced: 2 days ago
Synthesis, optical imaging, and absorption spectroscopy data for 179072 metal oxides
Last synced: 2 days ago
Energy refinement and analysis of structures in the QM9 database via a highly accurate quantum chemical method
Last synced: 2 days ago
A 2D hyperspectral library of mineral reflectance, from 900 to 2500 nm
Last synced: 2 days ago
X-ray nano-tomography of complete scales from the ultra-white beetles Lepidiota stigma and Cyphochilus
Last synced: 2 days ago
PPDIST, global 0.1° daily and 3-hourly precipitation probability distribution climatologies for 1979–2018
Last synced: 2 days ago
An annotated dataset of bioacoustic sensing and features of mosquitoes
Last synced: 2 days ago
Data-science ready, multisite, human diffusion MRI white-matter-tract statistics
Last synced: 2 days ago
Distinct roles of the RasGAP family proteins in C. elegans associative learning and memory
Last synced: 2 days ago
Exploring Host-Microbiome Interactions using an in Silico Model of Biomimetic Robots and Engineered Living Cells
Last synced: 2 days ago
Substrate engagement of integrins α5β1 and αvβ3 is necessary, but not sufficient, for high directional persistence in migration on fibronectin
Last synced: 2 days ago
Simultaneous Analysis of Secondary Structure and Light Scattering from Circular Dichroism Titrations: Application to Vectofusin-1
Last synced: 2 days ago
Transcriptomic analysis of short-fruit 1 (sf1) reveals new insights into the variation of fruit-related traits in Cucumis sativus
Last synced: 2 days ago
Exploring the Sequence-based Prediction of Folding Initiation Sites in Proteins
Last synced: 2 days ago
Doping colloidal bcc crystals — interstitial solids and meta-stable clusters
Last synced: 2 days ago
A generalized simulation development approach for predicting refugee destinations
Last synced: 2 days ago
Computational derivation of a molecular framework for hair follicle biology from disease genes
Last synced: 2 days ago
Bayesian Analysis of MicroScale Thermophoresis Data to Quantify Affinity of Protein:Protein Interactions with Human Survivin
Last synced: 2 days ago
Profiling invasive Plasmodium falciparum merozoites using an integrated omics approach
Last synced: 2 days ago
A hippocampo-cerebellar centred network for the learning and execution of sequence-based navigation
Last synced: 2 days ago
EEG Analytics for Early Detection of Autism Spectrum Disorder: A data-driven approach
Last synced: 2 days ago
Extracting biological age from biomedical data via deep learning: too much of a good thing?
Last synced: 2 days ago
Instant Clue: A Software Suite for Interactive Data Visualization and Analysis
Last synced: 2 days ago
Using volunteered observations to map human exposure to ticks
Last synced: 2 days ago
Spectrum of Microbial Sequences and a Bacterial Cell Wall Antigen in Primary Demyelination Brain Specimens Obtained from Living Patients
Last synced: 2 days ago
Flexible updating of dynamic knowledge structures
Last synced: 2 days ago
Automated behavioural analysis reveals the basic behavioural repertoire of the urochordate Ciona intestinalis
Last synced: 2 days ago
Insights into the antigenic advancement of influenza A(H3N2) viruses, 2011–2018
Last synced: 2 days ago
Evolutionary constraints on the complexity of genetic regulatory networks allow predictions of the total number of genetic interactions
Last synced: 2 days ago
Correcting locomotion dependent observation biases in thermal preference of Drosophila
Last synced: 2 days ago
Single-trial classification of awareness state during anesthesia by measuring critical dynamics of global brain activity
Last synced: 2 days ago
Meta-path Based Prioritization of Functional Drug Actions with Multi-Level Biological Networks
Last synced: 2 days ago
Predicting the decision making chemicals used for bacterial growth
Last synced: 2 days ago
Y-chromosomal connection between Hungarians and geographically distant populations of the Ural Mountain region and West Siberia
Last synced: 2 days ago
Transcript expression profiling in two contrasting cultivars and molecular cloning of a SKP-1 like gene, a component of SCF-ubiquitin proteasome system from mungbean Vigna radiate L.
Last synced: 2 days ago
Using weather radar to monitor the number, timing and directions of flying-foxes emerging from their roosts
Last synced: 2 days ago
High-throughput stability screening for detergent-solubilized membrane proteins
Last synced: 2 days ago
Real-Time Selective Sequencing with RUBRIC: Read Until with Basecall and Reference-Informed Criteria
Last synced: 2 days ago
Author Correction: Exploring the Sequence-based Prediction of Folding Initiation Sites in Proteins
Last synced: 2 days ago
Transcriptomic analysis reveals new hippocampal gene networks induced by prolactin
Last synced: 2 days ago
Signal flow control of complex signaling networks
Last synced: 2 days ago
Generalizing the inverse FFT off the unit circle
Last synced: 2 days ago
NMR-based metabolic profiling and comparison of Japanese persimmon cultivars
Last synced: 2 days ago
Murine xenograft bioreactors for human immunopeptidome discovery
Last synced: 2 days ago
The Role of Parvalbumin-positive Interneurons in Auditory Steady-State Response Deficits in Schizophrenia
Last synced: 2 days ago
Clustering of atomic displacement parameters in bovine trypsin reveals a distributed lattice of atoms with shared chemical properties
Last synced: 2 days ago
Chronotype assessment via a large scale socio-demographic survey favours yearlong Standard time over Daylight Saving Time in central Europe
Last synced: 2 days ago
Nationwide prediction of type 2 diabetes comorbidities
Last synced: 2 days ago
Similar genomic patterns of clinical infective endocarditis and oral isolates of Streptococcus sanguinis and Streptococcus gordonii
Last synced: 2 days ago
Engineering Meteorological Features to Select Stress Tolerant Hybrids in Maize
Last synced: 2 days ago
Hierarchical clustering of MS/MS spectra from the firefly metabolome identifies new lucibufagin compounds
Last synced: 2 days ago
Formation of an electrical coupling between differentiating cardiomyocytes
Last synced: 2 days ago
Nonlinear Analysis of Visually Normal EEGs to Differentiate Benign Childhood Epilepsy with Centrotemporal Spikes (BECTS)
Last synced: 2 days ago
Toffee – a highly efficient, lossless file format for DIA-MS
Last synced: 2 days ago
Full Spectrum Raman Excitation Mapping Spectroscopy
Last synced: 2 days ago
Cell type specific adhesion to surfaces functionalised by amine plasma polymers
Last synced: 2 days ago
The development of a scoring and ranking strategy for a patient-tailored adverse drug reaction prediction in polypharmacy
Last synced: 2 days ago
Horseback riding pathways and harbors at the beginning of the colonial era in Mexico
Last synced: 2 days ago
Standardization procedure for flow cytometry data harmonization in prospective multicenter studies
Last synced: 2 days ago
Three-dimensional bright-field microscopy with isotropic resolution based on multi-view acquisition and image fusion reconstruction
Last synced: 2 days ago
Noninvasive estimation of aortic hemodynamics and cardiac contractility using machine learning
Last synced: 2 days ago
Northstar enables automatic classification of known and novel cell types from tumor samples
Last synced: 2 days ago
Synchrotron-based FTIR microspectroscopy of protein aggregation and lipids peroxidation changes in human cataractous lens epithelial cells
Last synced: 2 days ago
Automatic classification of healthy and disease conditions from images or digital standard 12-lead electrocardiograms
Last synced: 2 days ago
Sea ice variability and maritime activity around Svalbard in the period 2012–2019
Last synced: 2 days ago
Lateral diffusion of CD14 and TLR2 in macrophage plasma membrane assessed by raster image correlation spectroscopy and single particle tracking
Last synced: 2 days ago
A potential energy and mutual information based link prediction approach for bipartite networks
Last synced: 2 days ago
Meta-analysis of viscosity of aqueous deep eutectic solvents and their components
Last synced: 2 days ago
A novel retinal ganglion cell quantification tool based on deep learning
Last synced: 2 days ago
Connecting complex networks to nonadditive entropies
Last synced: 2 days ago
PACIFIC: a lightweight deep-learning classifier of SARS-CoV-2 and co-infecting RNA viruses
Last synced: 2 days ago
Early risk assessment for COVID-19 patients from emergency department data using machine learning
Last synced: 2 days ago
Continuous glucose monitoring during pregnancy in healthy mice
Last synced: 2 days ago
The concerted emergence of well-known spatial and temporal ecological patterns in an evolutionary food web model in space
Last synced: 2 days ago
A novel Python module for statistical analysis of turbulence (P-SAT) in geophysical flows
Last synced: 2 days ago
Analysis of the response of the cell membrane of Saccharomyces cerevisiae during the detoxification of common lignocellulosic inhibitors
Last synced: 2 days ago
Hierarchical carrier transport simulator for defected nanoparticle solids
Last synced: 2 days ago
Feasibility of predicting allele specific expression from DNA sequencing using machine learning
Last synced: 2 days ago
Glycoproteomic analysis of the changes in protein N-glycosylation during neuronal differentiation in human-induced pluripotent stem cells and derived neuronal cells
Last synced: 2 days ago
Common neurobiological correlates of resilience and personality traits within the triple resting-state brain networks assessed by 7-Tesla ultra-high field MRI
Last synced: 2 days ago
Multivariable mortality risk prediction using machine learning for COVID-19 patients at admission (AICOVID)
Last synced: 2 days ago
Semantic segmentation of PolSAR image data using advanced deep learning model
Last synced: 2 days ago
Sublinear domination and core–periphery networks
Last synced: 2 days ago
An experimentally informed statistical elasto-plastic mineralised collagen fibre model at the micrometre and nanometre lengthscale
Last synced: 2 days ago
Geographic source estimation using airborne plant environmental DNA in dust
Last synced: 2 days ago
Tandem domain structure determination based on a systematic enumeration of conformations
Last synced: 2 days ago
The Preventable Risk Integrated ModEl and Its Use to Estimate the Health Impact of Public Health Policy Scenarios
Last synced: 2 days ago
Estimating the Underwater Diffuse Attenuation Coefficient with a Low-Cost Instrument: The KdUINO DIY Buoy
Last synced: 2 days ago
Comparative Study of Neural Network Frameworks for the Next Generation of Adaptive Optics Systems
Last synced: 2 days ago
Characterizing Focused Attention and Working Memory Using EEG
Last synced: 2 days ago
Enhancement of Localization Systems in NLOS Urban Scenario with Multipath Ray Tracing Fingerprints and Machine Learning
Last synced: 2 days ago
A Comparison of Machine Learning and Deep Learning Techniques for Activity Recognition using Mobile Devices
Last synced: 2 days ago
Smartbins: Using Intelligent Harvest Baskets to Estimate the Stages of Berry Harvesting
Last synced: 2 days ago
Smart Management Consumption in Renewable Energy Fed Ecosystems
Last synced: 2 days ago
Speckle Noise Filtering in Side-Scan Sonar Images Based on the Tucker Tensor Decomposition
Last synced: 2 days ago
Validation of Wireless Sensors for Psychophysiological Studies
Last synced: 2 days ago
PACO: Python-Based Atmospheric Correction
Last synced: 2 days ago
Mind Wandering in a Multimodal Reading Setting: Behavior Analysis &amp; Automatic Detection Using Eye-Tracking and an EDA Sensor
Last synced: 2 days ago
Data-Driven Cervical Cancer Prediction Model with Outlier Detection and Over-Sampling Methods
Last synced: 2 days ago
A Safe Charging Algorithm Based on Multiple Mobile Chargers
Last synced: 2 days ago
Image-Processing-Based Low-Cost Fault Detection Solution for End-of-Line ECUs in Automotive Manufacturing
Last synced: 2 days ago
Comparing Person-Specific and Independent Models on Subject-Dependent and Independent Human Activity Recognition Performance
Last synced: 2 days ago
Malware Detection of Hangul Word Processor Files Using Spatial Pyramid Average Pooling
Last synced: 2 days ago
Lightweight Driver Behavior Identification Model with Sparse Learning on In-Vehicle CAN-BUS Sensor Data
Last synced: 2 days ago
Generalized Deep Neural Network Model for Cuffless Blood Pressure Estimation with Photoplethysmogram Signal Only
Last synced: 2 days ago
Blood Stain Classification with Hyperspectral Imaging and Deep Neural Networks
Last synced: 2 days ago
Deep Convolutional and LSTM Networks on Multi-Channel Time Series Data for Gait Phase Recognition
Last synced: 2 days ago
Obstruction-Aware Signal-Loss-Tolerant Indoor Positioning Using Bluetooth Low Energy
Last synced: 2 days ago
A Do-It-Yourself Hyperspectral Imager Brought to Practice with Open-Source Python
Last synced: 2 days ago
Detecting Anomalous Transactions via an IoT Based Application: A Machine Learning Approach for Horse Racing Betting
Last synced: 2 days ago
Classification of Skin Disease Using Deep Learning Neural Networks with MobileNet V2 and LSTM
Last synced: 2 days ago
An Evaluation of Motion Trackers with Virtual Reality Sensor Technology in Comparison to a Marker-Based Motion Capture System Based on Joint Angles for Ergonomic Risk Assessment
Last synced: 2 days ago
Hand Gesture Recognition Using EGaIn-Silicone Soft Sensors
Last synced: 2 days ago
Sensing Optimum in the Raw: Leveraging the Raw-Data Imaging Capabilities of Raspberry Pi for Diagnostics Applications
Last synced: 2 days ago
Climate-Aware and IoT-Enabled Selection of the Most Suitable Stone Fruit Tree Variety
Last synced: 2 days ago
Evaluation of Open-Source and Pre-Trained Deep Convolutional Neural Networks Suitable for Player Detection and Motion Analysis in Squash
Last synced: 2 days ago
Particle Classification through the Analysis of the Forward Scattered Signal in Optical Tweezers
Last synced: 2 days ago
Evolving convolutional neural network parameters through the genetic algorithm for the breast cancer classification problem
Last synced: 2 days ago
Flow: Statistics, visualization and informatics for flow cytometry
Last synced: 2 days ago
Motmot, an open-source toolkit for realtime video acquisition and analysis
Last synced: 2 days ago
An Analysis of Sport-Specific Pain Symptoms through Inter-Individual Training Differences in CrossFit
Last synced: 2 days ago
Computing symmetrical strength of N-grams: a two pass filtering approach in automatic classification of text documents
Last synced: 2 days ago
Liquid-like and rigid-body motions in molecular-dynamics simulations of a crystalline protein
Last synced: 2 days ago
Insights into How Nucleotide-Binding Domains Power ABC Transport
Last synced: 2 days ago
The Role of the Membrane in the Structure and Biophysical Robustness of the Dengue Virion Envelope
Last synced: 2 days ago
Dynamic Susceptibility Contrast-MRI Quantification Software Tool: Development and Evaluation
Last synced: 2 days ago
Automatic Detection of Diabetic Retinopathy in Retinal Fundus Photographs Based on Deep Learning Algorithm
Last synced: 2 days ago
A Near-Complete Haplotype-Phased Genome of the Dikaryotic Wheat Stripe Rust Fungus <i>Puccinia striiformis</i> f. sp. <i>tritici</i> Reveals High Interhaplotype Diversity
Last synced: 2 days ago
A Master Regulator of Bacteroides thetaiotaomicron Gut Colonization Controls Carbohydrate Utilization and an Alternative Protein Synthesis Factor
Last synced: 2 days ago
A Multiplex Fluidic Chip for Rapid Phenotypic Antibiotic Susceptibility Testing
Last synced: 2 days ago
Calour: an Interactive, Microbe-Centric Analysis Tool
Last synced: 2 days ago
Emergent Subpopulation Behavior Uncovered with a Community Dynamic Metabolic Model of <i>Escherichia coli</i> Diauxic Growth
Last synced: 2 days ago
manta: a Clustering Algorithm for Weighted Ecological Networks
Last synced: 2 days ago
Separation of Donor and Recipient Microbial Diversity Allows Determination of Taxonomic and Functional Features of Gut Microbiota Restructuring following Fecal Transplantation
Last synced: 2 days ago
Food or just a free ride? A meta-analysis reveals the global diversity of the Plastisphere
Last synced: 2 days ago
Unwarping GISAXS data
Last synced: 2 days ago
Photocage-initiated time-resolved solution X-ray scattering investigation of protein dimerization
Last synced: 2 days ago
Serial snapshot crystallography for materials science with SwissFEL
Last synced: 2 days ago
Healing X-ray scattering images
Last synced: 2 days ago
Optimizing the usage of pupillary based indicators for cognitive workload
Last synced: 2 days ago
Bruise dating using deep learning
Last synced: 2 days ago
Proteomic Analysis of Pathogenic Fungi Reveals Highly Expressed Conserved Cell Wall Proteins
Last synced: 2 days ago
Prediction Model of Anastomotic Leakage Among Esophageal Cancer Patients After Receiving an Esophagectomy: Machine Learning Approach
Last synced: 2 days ago
Privacy-Preserving Analysis of Distributed Biomedical Data: Designing Efficient and Secure Multiparty Computations Using Distributed Statistical Learning Theory
Last synced: 2 days ago
Predicting Adverse Outcomes for Febrile Patients in the Emergency Department Using Sparse Laboratory Data: Development of a Time Adaptive Model
Last synced: 2 days ago
Deep Learning Algorithms with Demographic Information Help to Detect Tuberculosis in Chest Radiographs in Annual Workers’ Health Examination Data
Last synced: 2 days ago
Teleconsultations between Patients and Healthcare Professionals in Primary Care in Catalonia: The Evaluation of Text Classification Algorithms Using Supervised Machine Learning
Last synced: 2 days ago
“Better If They Laugh with Me than at Me”: The Role of Humor in Coping with Obesity-Related Stigma in Women
Last synced: 2 days ago
SARS‐CoV‐2 rapid antigen test: Fast‐safe or dangerous? An analysis in the emergency department of an university hospital
Last synced: 2 days ago
Improving the iterative Linear Interaction Energy approach using automated recognition of configurational transitions
Last synced: 2 days ago
Temporal chunking as a mechanism for unsupervised learning of task-sets
Last synced: 2 days ago
Feedback inhibition and its control in an insect olfactory circuit
Last synced: 2 days ago
Escape from neutralizing antibodies by SARS-CoV-2 spike protein variants
Last synced: 2 days ago
A decentralised neural model explaining optimal integration of navigational strategies in insects
Last synced: 2 days ago
Mouse color and wavelength-specific luminance contrast sensitivity are non-uniform across visual space
Last synced: 2 days ago
Heterogeneous T cell motility behaviors emerge from a coupling between speed and turning in vivo
Last synced: 2 days ago
Non-linear dimensionality reduction on extracellular waveforms reveals cell type diversity in premotor cortex
Last synced: 2 days ago
A Mammalian enhancer trap resource for discovering and manipulating neuronal cell types
Last synced: 2 days ago
Stochastic tuning of gene expression enables cellular adaptation in the absence of pre-existing regulatory circuitry
Last synced: 2 days ago
Neural coding in barrel cortex during whisker-guided locomotion
Last synced: 2 days ago
Precise excitation-inhibition balance controls gain and timing in the hippocampus
Last synced: 2 days ago
Temporal integration of auxin information for the regulation of patterning
Last synced: 2 days ago
Topological signatures in regulatory network enable phenotypic heterogeneity in small cell lung cancer
Last synced: 2 days ago
TRex, a fast multi-animal tracking system with markerless identification, and 2D estimation of posture and visual fields
Last synced: 2 days ago
The solubility product extends the buffering concept to heterotypic biomolecular condensates
Last synced: 2 days ago
Standardized and reproducible measurement of decision-making in mice
Last synced: 2 days ago
Persistent epigenetic memory impedes rescue of the telomeric phenotype in human ICF iPSCs following DNMT3B correction
Last synced: 2 days ago
Systematic identification of mutations and copy number alterations associated with cancer patient prognosis
Last synced: 2 days ago
A phylogenetic transform enhances analysis of compositional microbiota data
Last synced: 2 days ago
Predicting geographic location from genetic variation with deep neural networks
Last synced: 2 days ago
From plasmodesma geometry to effective symplasmic permeability through biophysical modelling
Last synced: 2 days ago
Spatial sampling in human visual cortex is modulated by both spatial and feature-based attention
Last synced: 2 days ago
Population genomics of intrapatient HIV-1 evolution
Last synced: 2 days ago
Single-cell transcriptional dynamics of flavivirus infection
Last synced: 2 days ago
Visualizing anatomically registered data with brainrender
Last synced: 2 days ago
An image-based data-driven analysis of cellular architecture in a developing tissue
Last synced: 2 days ago
Initiation of chromosome replication controls both division and replication cycles in E. coli through a double-adder mechanism
Last synced: 2 days ago
Parallel CRISPR-Cas9 screens clarify impacts of p53 on screen performance
Last synced: 2 days ago
Human ORC/MCM density is low in active genes and correlates with replication time but does not delimit initiation zones
Last synced: 2 days ago
Population coupling predicts the plasticity of stimulus responses in cortical circuits
Last synced: 2 days ago
Antagonistic regulation by insulin-like peptide and activin ensures the elaboration of appropriate dendritic field sizes of amacrine neurons
Last synced: 2 days ago
Real-time, low-latency closed-loop feedback using markerless posture tracking
Last synced: 2 days ago
Respiratory syncytial virus co-opts host mitochondrial function to favour infectious virus production
Last synced: 2 days ago
Osmolarity-independent electrical cues guide rapid response to injury in zebrafish epidermis
Last synced: 2 days ago
Modulation of formin processivity by profilin and mechanical tension
Last synced: 2 days ago
Wnt/PCP controls spreading of Wnt/β-catenin signals by cytonemes in vertebrates
Last synced: 2 days ago
Genome-Wide Identification and Characterization of the Mitochondrial Transcription Termination Factors (mTERFs) in Capsicum annuum L.
Last synced: 2 days ago
Comparing a Query Compound with Drug Target Classes Using 3D-Chemical Similarity
Last synced: 2 days ago
Identification of Gastritis Subtypes by Convolutional Neuronal Networks on Histological Images of Antrum and Corpus Biopsies
Last synced: 2 days ago
LncLocation: Efficient Subcellular Location Prediction of Long Non-Coding RNA-Based Multi-Source Heterogeneous Feature Fusion
Last synced: 2 days ago
MRI Radiomic Features to Predict IDH1 Mutation Status in Gliomas: A Machine Learning Approach using Gradient Tree Boosting
Last synced: 2 days ago
MET Exon 14 Skipping: A Case Study for the Detection of Genetic Variants in Cancer Driver Genes by Deep Learning
Last synced: 2 days ago
Compatibility of Distinct Label-Free Proteomic Workflows in Absolute Quantification of Proteins Linked to the Oocyte Quality in Human Follicular Fluid
Last synced: 2 days ago
Use of Patient-Reported Symptoms from an Online Symptom Tracking Tool for Dementia Severity Staging: Development and Validation of a Machine Learning Approach
Last synced: 2 days ago
User Perspectives of Diet-Tracking Apps: Reviews Content Analysis and Topic Modeling
Last synced: 2 days ago
The Association Between Medication Adherence for Chronic Conditions and Digital Health Activity Tracking: Retrospective Analysis
Last synced: 2 days ago
Evaluation of M2-like macrophage enrichment after diffuse traumatic brain injury through transient interleukin-4 expression from engineered mesenchymal stromal cells
Last synced: 2 days ago
Within-cycle instantaneous frequency profiles report oscillatory waveform dynamics
Last synced: 2 days ago
Focal Local Field Potential Signature of the Single-Axon Monosynaptic Thalamocortical Connection
Last synced: 2 days ago
q2-sample-classifier: machine-learning tools for microbiome classification and regression
Last synced: 2 days ago
CMakeCatchTemplate: A C++ template project
Last synced: 2 days ago
PyBIDS: Python tools for BIDS datasets
Last synced: 2 days ago
OutLyzer: software for extracting low-allele-frequency tumor mutations from sequencing background noise in clinical practice
Last synced: 2 days ago
MYCN acts as a direct co-regulator of p53 in MYCN amplified neuroblastoma
Last synced: 2 days ago
The landscape of novel and complementary targets for immunotherapy: an analysis of gene expression in the tumor microenvironment
Last synced: 2 days ago
Body Mass Index and Birth Weight Improve Polygenic Risk Score for Type 2 Diabetes
Last synced: 2 days ago
Modelling microbial communities using biochemical resource allocation analysis
Last synced: 2 days ago
Multi-camera real-time three-dimensional tracking of multiple flying animals
Last synced: 2 days ago
Microscope-AOtools: a generalised adaptive optics implementation
Last synced: 2 days ago
Reconstruction of Average Subtracted Tubular Regions (RASTR) enables structure determination of tubular filaments by cryo-EM
Last synced: 2 days ago
X-ray Spectral Imaging Program: XSIP
Last synced: 2 days ago
High-resolution macromolecular crystallography at the FemtoMAX beamline with time-over-threshold photon detection
Last synced: 2 days ago
Automated data collection and real-time data analysis suite for serial synchrotron crystallography
Last synced: 2 days ago
Solution scattering at the Life Science X-ray Scattering (LiX) beamline
Last synced: 2 days ago
Mathematical models of amino acid panel for assisting diagnosis of children acute leukemia
Last synced: 2 days ago
What, If Anything, Is Rodent Prefrontal Cortex?
Last synced: 2 days ago
The Future Is Open: Open-Source Tools for Behavioral Neuroscience Research
Last synced: 2 days ago
Robust and Rapid Air-Borne Odor Tracking without Casting
Last synced: 2 days ago
Electrophysiological Frequency Band Ratio Measures Conflate Periodic and Aperiodic Neural Activity
Last synced: 2 days ago
Circuit and Cellular Mechanisms Facilitate the Transformation from Dense to Sparse Coding in the Insect Olfactory System
Last synced: 2 days ago
Plasma Metabolites Related to Peripheral and Hepatic Insulin Sensitivity Are Not Directly Linked to Gut Microbiota Composition
Last synced: 2 days ago
The Role of Glycemic Index and Glycemic Load in the Development of Real-Time Postprandial Glycemic Response Prediction Models for Patients with Gestational Diabetes
Last synced: 2 days ago
An Innovative Machine Learning Approach to Predict the Dietary Fiber Content of Packaged Foods
Last synced: 2 days ago

Committers

Last synced: 2 days ago

All Time
  • Total Commits: 31,300
  • Total Committers: 2,032
  • Avg Commits per committer: 15.404
  • Development Distribution Score (DDS): 0.925
Past Year
  • Commits: 1,765
  • Committers: 213
  • Avg Commits per committer: 8.286
  • Development Distribution Score (DDS): 0.67
Top Committers
Name Email Commits
Charles Harris c****s@g****m 2,343
Sebastian Berg s****n@s****t 2,035
Travis Oliphant t****t@g****m 2,013
David Cournapeau c****e@g****m 1,475
Matti Picus m****s@g****m 1,205
Pearu Peterson p****n@g****m 1,099
Eric Wieser w****c@g****m 1,022
Joren Hammudoglu j****u@g****m 923
Ralf Gommers r****s@g****m 909
Pauli Virtanen p****v@i****i 806
Bas van Beek b****k@v****l 761
Mark Wiebe m****e@g****m 734
Nathan Goldbaum n****m@g****m 577
Julian Taylor j****8@g****m 517
Stefan van der Walt s****v@b****u 513
dependabot[bot] 4****] 450
Raghuveer Devulapalli m****r@g****m 316
Rohit Goswami r****2@h****s 297
Sayed Awad s****o@i****m 281
Dimitri Papadopoulos Orfanos 3****s 267
Warren Weckesser w****r@g****m 257
Kevin Sheppard k****d@g****m 252
Marten van Kerkwijk m****k@a****a 249
Eric Jones e****c@e****m 248
Aaron Meurer a****r@g****m 246
David M Cooke c****m@l****t 244
Robert Kern r****n@e****m 234
Mateusz Sokół m****6@g****m 229
Pierre GM p****e@g****m 197
Ross Barnowski r****r@b****u 181
and 2,002 more...
Committer Domains (Top 20 + Academic)
google.com: 15 enthought.com: 12 intel.com: 8 redhat.com: 6 qq.com: 6 ibm.com: 5 mit.edu: 5 continuum.io: 5 berkeley.edu: 5 posteo.de: 5 gmx.net: 4 uw.edu: 4 nasa.gov: 4 microsoft.com: 4 gmx.de: 4 foxmail.com: 4 msn.com: 3 lbl.gov: 3 python.org: 3 inria.fr: 3 umich.edu: 3 stanford.edu: 2 tuwien.ac.at: 2 cam.ac.uk: 2 illinois.edu: 2 mail.mcgill.ca: 2 umn.edu: 2 imperial.ac.uk: 2 ed.ac.uk: 2 tum.de: 2 oregonstate.edu: 2 dickinson.edu: 2 cmat.edu.uy: 1 physik.uni-bielefeld.de: 1 student.tudelft.nl: 1 uri.edu: 1 uni-bonn.de: 1 stern.nyu.edu: 1 stsci.edu: 1 u.nus.edu: 1 monash.edu: 1 alum.utoronto.ca: 1 cfa.harvard.edu: 1 mayo.edu: 1 geophysik.uni-muenchen.de: 1 mail.huji.ac.il: 1 knights.ucf.edu: 1 cars.uchicago.edu: 1 lanl.gov: 1 ska.ac.za: 1 physics.ubc.ca: 1 virginia.edu: 1 bham.ac.uk: 1 geo.uni-bonn.de: 1 math.ucdavis.edu: 1 wildcats.unh.edu: 1 pcampus.edu.np: 1 astro.physik.uni-goettingen.de: 1 ualberta.ca: 1 informatik.uni-kiel.de: 1 bnl.gov: 1 colorado.edu: 1 flatironinstitute.org: 1 math.stanford.edu: 1 andrew.cmu.edu: 1 vu.nl: 1 astro.utoronto.ca: 1 uci.edu: 1 ncsu.edu: 1 calpoly.edu: 1 ufl.edu: 1 srmuniv.edu.in: 1 ligo.org: 1 fudan.edu.cn: 1 noaa.gov: 1 cs.berkeley.edu: 1 kth.se: 1 sussex.ac.uk: 1 ku.edu.tr: 1 math.utah.edu: 1 byui.edu: 1 student.usyd.edu.au: 1 hawaii.edu: 1 mpa-garching.mpg.de: 1 alum.mit.edu: 1 cornell.edu: 1 utexas.edu: 1 ds.mpg.de: 1 metu.edu.tr: 1 ucsd.edu: 1 fri.uni-lj.si: 1 nau.edu: 1 uni-jena.de: 1 sydney.edu.au: 1 colgate.edu: 1 uj.edu.pl: 1 duke.edu: 1 mail.uc.edu: 1 mail.sdsu.edu: 1 univ-rennes1.fr: 1 nbi.ku.dk: 1 swansea.ac.uk: 1 ethz.ch: 1 zeu.uni-giessen.de: 1 physik.fu-berlin.de: 1 nottingham.ac.uk: 1 physik.uni-augsburg.de: 1 jhu.edu: 1 fci.helwan.edu.eg: 1 uni-mainz.de: 1 wehi.edu.au: 1 alunos.utfpr.edu.br: 1 tepper.cmu.edu: 1 student.rug.nl: 1 data61.csiro.au: 1 al.insper.edu.br: 1 mpl.mpg.de: 1 purdue.edu: 1 fz-juelich.de: 1 ist.ucf.edu: 1 ucl.ac.uk: 1 begws92.beg.utexas.edu: 1 haverford.edu: 1 kiit.ac.in: 1 cern.ch: 1 mpibpc.mpg.de: 1 linux.ucla.edu: 1 anu.edu.au: 1 eng.ucsd.edu: 1 uni-hamburg.de: 1 student.uni-augsburg.de: 1 unibas.ch: 1 tacc.utexas.edu: 1 ncas.ac.uk: 1 ens.fr: 1 ucdavis.edu: 1 uchicago.edu: 1 lums.edu.pk: 1 in.tum.de: 1 phystech.edu: 1 alumni.iitm.ac.in: 1 students.iitmandi.ac.in: 1 udo.edu: 1 spu.edu: 1

Issues and Pull Requests

Last synced: 2 days ago

All Time
  • Total issues: 2,857
  • Total pull requests: 6,503
  • Average time to close issues: about 1 year
  • Average time to close pull requests: about 1 month
  • Total issue authors: 1,683
  • Total pull request authors: 823
  • Average comments per issue: 4.87
  • Average comments per pull request: 2.65
  • Merged pull requests: 4,752
  • Bot issues: 4
  • Bot pull requests: 377
Past Year
  • Issues: 225
  • Pull requests: 731
  • Average time to close issues: 16 days
  • Average time to close pull requests: 7 days
  • Issue authors: 144
  • Pull request authors: 203
  • Average comments per issue: 3.26
  • Average comments per pull request: 2.3
  • Merged pull requests: 338
  • Bot issues: 2
  • Bot pull requests: 54
Top Authors
Issue Authors
  • ngoldbaum (90)
  • seberg (76)
  • charris (75)
  • mattip (61)
  • rgommers (50)
  • HaoZeke (32)
  • eric-wieser (26)
  • jorenham (26)
  • mhvk (23)
  • neutrinoceros (16)
  • hawkinsp (16)
  • h-vetinari (15)
  • WarrenWeckesser (15)
  • bersbersbers (15)
  • jakevdp (15)
Pull Request Authors
  • charris (1,163)
  • jorenham (542)
  • ngoldbaum (384)
  • dependabot[bot] (377)
  • seberg (310)
  • rgommers (180)
  • mattip (171)
  • DimitriPapadopoulos (151)
  • mtsokol (144)
  • MarcoGorelli (121)
  • eendebakpt (109)
  • F3eQnxN3RriK (69)
  • WarrenWeckesser (65)
  • mhvk (64)
  • HaoZeke (61)
Top Labels
Issue Labels
00 - Bug (1,238) 04 - Documentation (347) 01 - Enhancement (177) component: numpy.f2py (120) 57 - Close? (115) 32 - Installation (110) 33 - Question (99) Static typing (83) component: numpy._core (49) sprintable (43) component: numpy.distutils (42) 03 - Maintenance (41) component: numpy.core (41) component: numpy.ma (41) component: SIMD (39) component: numpy.random (37) component: CI (37) component: numpy.lib (34) 41 - Static typing (32) 17 - Task (31) component: build (27) component: numpy.dtype (27) component: numpy.linalg (27) 39 - free-threading (27) 23 - Wish List (23) 06 - Regression (23) 15 - Discussion (22) Numpy 2.0 API Changes (21) component: numpy.ufunc (21) 62 - Python API (18)
Pull Request Labels
03 - Maintenance (1,548) 00 - Bug (1,115) 04 - Documentation (952) 08 - Backport (869) 01 - Enhancement (601) 41 - Static typing (470) 09 - Backport-Candidate (323) 36 - Build (271) Static typing (269) component: CI (203) 05 - Testing (196) component: numpy.f2py (177) 30 - API (138) component: SIMD (110) 39 - free-threading (107) numtype (99) component: numpy.ma (95) 14 - Release (91) Numpy 2.0 API Changes (80) component: numpy._core (78) Patch (62) Meson (58) component: numpy.lib (55) 56 - Needs Release Note. (52) 07 - Deprecation (51) 39 - no-GIL (44) triage review (40) component: numpy.random (38) 25 - WIP (36) component: build (35)

Packages

  • Total packages: 9
  • Total downloads:
    • conda 139,506,380 total
    • pypi 663,399,446 last-month
  • Total docker downloads: 3,187,959,989
  • Total dependent packages: 40,761
    (may contain duplicates)
  • Total dependent repositories: 516,235
    (may contain duplicates)
  • Total versions: 688
  • Total maintainers: 8
  • Total advisories: 8
pypi.org: numpy

Fundamental package for array computing in Python

  • Documentation: https://numpy.readthedocs.io/
  • License: BSD-3-Clause AND 0BSD AND MIT AND Zlib AND CC0-1.0
  • Latest release: 2.4.2
    published 5 months ago
  • Versions: 175
  • Dependent Packages: 36,144
  • Dependent Repositories: 487,463
  • Downloads: 663,399,242 Last month
  • Docker Downloads: 3,187,959,989
Rankings
Dependent packages count: 0.0%
Dependent repos count: 0.0%
Downloads: 0.0%
Docker downloads count: 0.0%
Average: 0.1%
Forks count: 0.1%
Stargazers count: 0.2%
Last synced: 4 months ago
conda-forge.org: numpy

NumPy is the fundamental package needed for scientific computing with Python.

  • Homepage: http://numpy.org/
  • License: BSD-3-Clause
  • Latest release: 1.23.4
    published over 3 years ago
  • Versions: 67
  • Dependent Packages: 4,332
  • Dependent Repositories: 13,512
  • Downloads: 128,153,132 Total
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Average: 0.7%
Forks count: 1.1%
Stargazers count: 1.5%
Last synced: 3 months ago
anaconda.org: numpy

NumPy is the fundamental package needed for scientific computing with Python.

  • Homepage: https://numpy.org
  • License: BSD-3-Clause AND 0BSD AND MIT AND Zlib AND CC0-1.0
  • Latest release: 2.4.6
    published about 1 month ago
  • Versions: 70
  • Dependent Packages: 275
  • Dependent Repositories: 13,512
  • Downloads: 5,829,405 Total
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.1%
Average: 1.8%
Forks count: 3.1%
Stargazers count: 3.9%
Last synced: about 1 month ago
pypi.org: intel-numpy

NumPy is the fundamental package for array computing with Python.

  • Versions: 4
  • Dependent Packages: 4
  • Dependent Repositories: 38
  • Downloads: 190 Last month
Rankings
Forks count: 0.1%
Stargazers count: 0.1%
Average: 2.1%
Dependent repos count: 2.4%
Dependent packages count: 2.4%
Downloads: 5.6%
Maintainers (2)
Last synced: 9 days ago
proxy.golang.org: github.com/numpy/numpy
  • Versions: 133
  • Dependent Packages: 0
  • Dependent Repositories: 1
Rankings
Forks count: 0.0%
Stargazers count: 0.1%
Average: 3.6%
Dependent repos count: 4.7%
Dependent packages count: 9.6%
Last synced: 3 months ago
anaconda.org: numpy-base

NumPy is the fundamental package needed for scientific computing with Python.

  • Homepage: https://numpy.org
  • License: BSD-3-Clause AND 0BSD AND MIT AND Zlib AND CC0-1.0
  • Latest release: 2.4.6
    published about 1 month ago
  • Versions: 62
  • Dependent Packages: 5
  • Dependent Repositories: 1,707
  • Downloads: 5,523,843 Total
Rankings
Dependent repos count: 2.1%
Forks count: 3.1%
Stargazers count: 3.9%
Average: 4.5%
Dependent packages count: 8.8%
Last synced: about 1 month ago
proxy.golang.org: github.com/numpy/Numpy
  • Versions: 154
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent packages count: 4.8%
Average: 5.0%
Dependent repos count: 5.1%
Last synced: 9 days ago
pypi.org: numpy-mips64

NumPy is the fundamental package for array computing with Python.

  • Versions: 1
  • Dependent Packages: 0
  • Dependent Repositories: 1
  • Downloads: 14 Last month
Rankings
Forks count: 0.1%
Stargazers count: 0.1%
Dependent packages count: 10.1%
Average: 12.3%
Dependent repos count: 21.5%
Downloads: 29.5%
Maintainers (1)
Last synced: 9 days ago
anaconda.org: numpy-devel

NumPy is the fundamental package needed for scientific computing with Python.

  • Versions: 22
  • Dependent Packages: 1
  • Dependent Repositories: 1
Rankings
Forks count: 3.1%
Stargazers count: 3.9%
Average: 22.3%
Dependent packages count: 30.7%
Dependent repos count: 51.4%
Last synced: 3 months ago

Dependencies

.github/workflows/circleci.yml actions
  • larsoner/circleci-artifacts-redirector-action master composite
.github/workflows/cygwin.yml actions
  • actions/checkout v3 composite
  • actions/upload-artifact v3 composite
  • cygwin/cygwin-install-action v2 composite
  • egor-tensin/cleanup-path v1 composite
.github/workflows/emscripten.yml actions
  • actions/checkout v3 composite
  • actions/setup-node v3 composite
  • actions/setup-python v4 composite
  • mymindstorm/setup-emsdk v11 composite
.github/workflows/labeler.yml actions
  • gerrymanoim/pr-prefix-labeler v3 composite
.github/workflows/scorecards.yml actions
  • actions/checkout 93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8 composite
  • actions/upload-artifact 3cea5372237819ed00197afe530f5a7ea3e805c8 composite
  • github/codeql-action/upload-sarif 807578363a7869ca324a79039e6db9c843e0e100 composite
  • ossf/scorecard-action 99c53751e09b9529366343771cc321ec74e9bd3d composite
.github/workflows/wheels.yml actions
  • actions/checkout v3 composite
  • actions/setup-python v4 composite
  • actions/upload-artifact v3 composite
  • pypa/cibuildwheel v2.11.2 composite
build_requirements.txt pypi
  • Cython >=0.29.30,<3.0
  • meson-python >=0.10.0
  • ninja *
  • wheel ==0.37.0
doc_requirements.txt pypi
  • breathe *
  • ipython *
  • matplotlib *
  • numpydoc ==1.4
  • pandas *
  • pydata-sphinx-theme ==0.9.0
  • scipy *
  • sphinx >=4.5.0
  • sphinx-design *
  • towncrier *
linter_requirements.txt pypi
  • GitPython ==3.1.13
  • pycodestyle ==2.8.0
release_requirements.txt pypi
  • Paver *
  • beautifulsoup4 *
  • gitpython *
  • pygithub *
  • twine *
  • urllib3 *
test_requirements.txt pypi
  • cffi * test
  • charset-normalizer * test
  • cython >=0.29.30,<3.0 test
  • hypothesis ==6.24.1 test
  • mypy ==0.981 test
  • pytest ==6.2.5 test
  • pytest-cov ==3.0.0 test
  • pytz ==2021.3 test
  • setuptools ==59.2.0 test
  • typing_extensions >=4.2.0 test
  • wheel ==0.37.0 test
.github/workflows/codeql.yml actions
  • actions/checkout c85c95e3d7251135ab7dc9ce3241c5835cc595a9 composite
  • github/codeql-action/analyze cdcdbb579706841c47f7063dda365e292e5cad7a composite
  • github/codeql-action/autobuild cdcdbb579706841c47f7063dda365e292e5cad7a composite
  • github/codeql-action/init cdcdbb579706841c47f7063dda365e292e5cad7a composite
.github/workflows/dependency-review.yml actions
  • actions/checkout c85c95e3d7251135ab7dc9ce3241c5835cc595a9 composite
  • actions/dependency-review-action 1360a344ccb0ab6e9475edef90ad2f46bf8003b1 composite
.github/meson_actions/action.yml actions
.github/workflows/linux.yml actions
  • ./.github/meson_actions * composite
  • actions/checkout 3df4ab11eba7bda6032a0b82a6bb43b11571feac composite
  • actions/setup-python 61a6322f88396a6271a6ee3565807d608ecaddd1 composite
.github/workflows/linux_blas.yml actions
  • actions/checkout 3df4ab11eba7bda6032a0b82a6bb43b11571feac composite
  • actions/setup-python 61a6322f88396a6271a6ee3565807d608ecaddd1 composite
.github/workflows/linux_compiler_sanitizers.yml actions
  • actions/checkout 3df4ab11eba7bda6032a0b82a6bb43b11571feac composite
  • actions/setup-python 61a6322f88396a6271a6ee3565807d608ecaddd1 composite
.github/workflows/linux_musl.yml actions
.github/workflows/linux_qemu.yml actions
  • actions/cache v3 composite
  • actions/checkout 3df4ab11eba7bda6032a0b82a6bb43b11571feac composite
.github/workflows/linux_simd.yml actions
  • ./.github/meson_actions * composite
  • actions/checkout 3df4ab11eba7bda6032a0b82a6bb43b11571feac composite
  • actions/setup-python 61a6322f88396a6271a6ee3565807d608ecaddd1 composite
.github/workflows/macos.yml actions
  • actions/cache 88522ab9f39a2ea568f7027eddc7d8d8bc9d59c8 composite
  • actions/checkout 3df4ab11eba7bda6032a0b82a6bb43b11571feac composite
  • actions/setup-python 61a6322f88396a6271a6ee3565807d608ecaddd1 composite
  • conda-incubator/setup-miniconda 3b0f2504dd76ef23b6d31f291f4913fb60ab5ff3 composite
  • maxim-lobanov/setup-xcode 9a697e2b393340c3cacd97468baa318e4c883d98 composite
.github/workflows/mypy.yml actions
  • actions/checkout 3df4ab11eba7bda6032a0b82a6bb43b11571feac composite
  • actions/setup-python 61a6322f88396a6271a6ee3565807d608ecaddd1 composite
.github/workflows/windows.yml actions
  • actions/checkout 3df4ab11eba7bda6032a0b82a6bb43b11571feac composite
  • actions/setup-python 61a6322f88396a6271a6ee3565807d608ecaddd1 composite
  • bus1/cabuild/action/msdevshell e22aba57d6e74891d059d66501b6b5aed8123c4d composite
numpy/core/tests/examples/cython/setup.py pypi
numpy/core/tests/examples/limited_api/setup.py pypi
pyproject.toml pypi
tools/swig/test/setup.py pypi
environment.yml pypi