paidiverpy - A library to preprocess image data.

Changelog

v0.1.4

Full Changelog

Implemented enhancements:

• Add the possibility to work with several images at the same time on the image processing (instead of one image per time) #200
• Function to open and export metadata to different formats #187
• Generate interactive notebook from config #184
• Create a configuration file json schema automatically #164
• Create an Output Class to Standardize Jupyter Notebook Outputs #29
• Illumination correction #19
• Addressing blur #17
• Contrast alteration #14
• Feature to visualize images in low resolution #4

Fixed bugs:

• Clean the configuration parser and correct bug with the default params for each step #196
• Correct resize function #182
• Adjust edge dectection method #50

Closed issues:

• Reference funding details in readme #204
• Raise error is not been added per step (it is only added in the beginning of the pipeline) #201
• Validate new config added when you add a new step in the pipeline #199
• Are resample by depth and by altitude the same thing? #198
• Deploy code on bioconda #194
• Rename pelagic to plankton #188
• Enhance crop function #183
• Create a conda distribution and add build for mac and windows #174
• Fix and Re-enable SonarCloud Workflow in CI #162
• Include metadata in each image preprocessing step #156
• Increase test coverage #84
• Add data investigation feature #26
• Create a simple frontend using streamlit for pipeline management #25
• Colour alteration #13
• Add support to load different types of images #2

Merged pull requests:

• 186 enhance exif handling in processed images #210 (soutobias)
• 187 function to open and export metadata to different formats #208 (soutobias)
• 2 add support to load different types of images #206 (soutobias)
• update config validation #203 (soutobias)
• 84 increase test coverage #202 (soutobias)
• update tests #197 (soutobias)
• 194 deploy code on bioconda #195 (soutobias)
• 174 create a conda distribution #192 (soutobias)

v0.1.3 (2025-03-06)

Full Changelog

v0.1.2 (2025-03-06)

Full Changelog

Closed issues:

• Create a ci/cd that runs the notebook automatically #190
• Link Checker Report - 2025-02-26 #178
• Link Checker Report - 2025-02-26 #177
• Link Checker Report - 2025-02-25 #176
• Link Checker Report - 2025-02-24 #173
• Link Checker Report - 2025-02-24 #172
• image file extension bug (using pipeline.save_images) #170
• Run sequential and parallel in custom layer is not standardised with the code #163
• Link Checker Report - 2025-02-13 #161
• Link Checker Report - 2025-02-13 #160
• Update documentation gallery symbols and zenodo link to lastest version #158
• Remove double image extension when exporting images #157
• Link Checker Report - 2025-02-12 #155
• Link Checker Report - 2025-02-12 #154
• Link Checker Report - 2025-02-12 #152
• Link Checker Report - 2025-02-12 #151
• Link Checker Report - 2025-02-12 #150
• Link Checker Report - 2025-02-12 #149
• Link Checker Report - 2025-02-12 #148
• Link Checker Report - 2025-02-12 #147
• Link Checker Report - 2025-02-12 #146
• Link Checker Report - 2025-02-12 #145
• Link Checker Report - 2025-02-12 #144
• Link Checker Report - 2025-02-12 #143
• Link Checker Report - 2025-02-12 #141
• Image converting issue #137
• Glossary documentation #22

Merged pull requests:

• 163 run sequential and parallel in custom layer is not standardised with the code #180 (soutobias)
• 158 update documentation gallery symbols and zenodo link to lastest version #175 (soutobias)
• 157 remove double image extension when exporting images #171 (soutobias)
• 137 image converting issue #159 (Mojtabamsd)

v0.1.1 (2025-02-12)

Full Changelog

v0.1.0 (2025-02-12)

Full Changelog

Closed issues:

• Link Checker Report - 2025-02-12 #140
• Link Checker Report - 2025-02-12 #139
• Link Checker Report - 2025-02-12 #138
• Link Checker Report - 2025-02-12 #135
• Link Checker Report - 2025-02-12 #134
• Link Checker Report - 2025-02-11 #132
• Link Checker Report - 2025-02-10 #131
• Link Checker Report - 2025-02-10 #130
• Link Checker Report - 2025-02-10 #129
• Link Checker Report - 2025-02-10 #128
• Link Checker Report - 2025-02-10 #126
• Link Checker Report - 2025-02-10 #125
• Link Checker Report - 2025-02-10 #124
• Link Checker Report - 2025-02-07 #123
• Link Checker Report - 2025-02-07 #122
• Link Checker Report - 2025-02-07 #120
• Link Checker Report - 2025-02-07 #119
• Link Checker Report - 2025-02-07 #118
• Link Checker Report - 2025-02-07 #117
• Link Checker Report - 2025-02-07 #116
• Link Checker Report - 2025-02-07 #115
• Correct logs and error handler for methods #114
• Link Checker Report - 2025-02-06 #113
• Link Checker Report - 2025-02-06 #112
• Link Checker Report - 2025-02-05 #111
• Link Checker Report - 2025-02-04 #109
• Link Checker Report - 2025-02-04 #108
• Update documentation #106
• Link Checker Report - 2025-02-01 #105
• Link Checker Report - 2025-01-30 #104
• Code review #87
• Create github actions and add runner #32
• Lazy load catalog #24
• Add feature to work with images in the cloud/lazy load #23

Merged pull requests:

• 32 create GitHub actions and add runner #133 (soutobias)
• 32 create GitHub actions and add runner #127 (soutobias)
• 87 code review #110 (soutobias)
• 24 lazy load catalog #107 (soutobias)

v0.0.2 (2025-01-14)

Full Changelog

Closed issues:

• Link Checker Report - 2025-01-13 #101
• Link Checker Report - 2025-01-13 #99
• Link Checker Report - 2025-01-01 #88
• Release the first version of the package on pypi #65
• Next step: Citation data #42

Merged pull requests:

• docs : prepare for the first release #103 (soutobias)
• feat : correct citation #90 (soutobias)

v0.0.1 (2025-01-13)

Full Changelog

Closed issues:

• Link Checker Report - 2025-01-13 #98
• Link Checker Report - 2025-01-13 #97
• Link Checker Report - 2025-01-13 #96
• Link Checker Report - 2025-01-13 #95
• Link Checker Report - 2025-01-13 #94
• Link Checker Report - 2025-01-13 #93
• Link Checker Report - 2025-01-13 #92
• Link Checker Report - 2025-01-13 #91
• Create a Marimba and Paidiverpy Integration Example #81
• Link Checker Report - 2024-12-01 #79
• Correct documentation autoapi #77
• Correct json schema to be non case sensitive #72
• user guide documentation from best practice #70
• Link Checker Report - 2024-11-01 #66
• Allow Users to Integrate Custom Algorithms into the pipeline #63
• Create a config schema, config validator and a website for creating config files #57
• Link Checker Report - 2024-10-01 #56
• Create sample dataset methods to download sample data #53
• Test IFDO file as metadata file #51
• Next step: Sonarcloud integration #46
• Next step: Enable Zenodo integration #45
• Next step: Read the Docs #44
• Next step: Linting #43
• Create an example pipeline for benthos images #41
• Create an example pipeline for pelagic #40
• Next step: Sonarcloud integration #39
• Next step: Enable Zenodo integration #38
• Next step: Read the Docs #36
• Next step: Linting #35
• Next step: Citation data #34
• Create documentation #33
• Create first tests #31
• Add docstring to functions #30
• Add parallelisation to the code #28
• Rename catalog name? #21
• British or USA english? #20
• Vignette removal #16
• Create a rename step #3

Merged pull requests:

• style: correct styling" #86 (soutobias)
• style: correct names #85 (soutobias)
• 31 create first tests #83 (soutobias)
• 64 add slurm job submission for pipeline runs on hpc systems #82 (soutobias)
• 77 correct documentation autoapi #80 (soutobias)
• feat: add environment.yml fiile and update docs #1 (soutobias)

* This Changelog was automatically generated by githubchangeloggenerator

- Python
Published by soutobias 9 months ago

paidiverpy - A library to preprocess image data.

This release integrates the updates described in the changelog:

Closed issues:

• Rename pelagic to plankton #188
• Create a conda distribution and add build for mac and windows #174
• Create a ci/cd that runs the notebook automatically #190

Merged pull requests:

• 174 create a conda distribution #192 (soutobias)

- Python
Published by soutobias about 1 year ago

paidiverpy - A library to preprocess image data.

This release integrates the updates described in the changelog:

Closed issues:

• Link Checker Report - 2025-02-26 #178
• Link Checker Report - 2025-02-26 #177
• Link Checker Report - 2025-02-25 #176
• Link Checker Report - 2025-02-24 #173
• Link Checker Report - 2025-02-24 #172
• image file extension bug (using pipeline.save_images) #170
• Run sequential and parallel in custom layer is not standardised with the code #163
• Link Checker Report - 2025-02-13 #161
• Link Checker Report - 2025-02-13 #160
• Update documentation gallery symbols and zenodo link to lastest version #158
• Remove double image extension when exporting images #157
• Link Checker Report - 2025-02-12 #155
• Link Checker Report - 2025-02-12 #154
• Link Checker Report - 2025-02-12 #152
• Link Checker Report - 2025-02-12 #151
• Link Checker Report - 2025-02-12 #150
• Link Checker Report - 2025-02-12 #149
• Link Checker Report - 2025-02-12 #148
• Link Checker Report - 2025-02-12 #147
• Link Checker Report - 2025-02-12 #146
• Link Checker Report - 2025-02-12 #145
• Link Checker Report - 2025-02-12 #144
• Link Checker Report - 2025-02-12 #143
• Link Checker Report - 2025-02-12 #141
• Image converting issue #137
• Glossary documentation #22

Merged pull requests:

• 163 run sequential and parallel in custom layer is not standardised with the code #180 (soutobias)
• 158 update documentation gallery symbols and zenodo link to lastest version #175 (soutobias)
• 157 remove double image extension when exporting images #171 (soutobias)
• 137 image converting issue #159 (Mojtabamsd)

- Python
Published by soutobias about 1 year ago

paidiverpy - A library to preprocess image data.

This release integrates the updates described in the changelog:

Closed issues:

• Link Checker Report - 2025-02-12 #140
• Correct logs and error handler for methods #114
• Update documentation #106
• Code review #87
• Create github actions and add runner #32
• Lazy load catalog #24
• Add feature to work with images in the cloud/lazy load #23

Merged pull requests:

• 32 create GitHub actions and add runner #133 (soutobias)
• 32 create GitHub actions and add runner #127 (soutobias)
• 87 code review #110 (soutobias)
• 24 lazy load catalog #107 (soutobias)

- Python
Published by soutobias about 1 year ago

paidiverpy - First release of the package

- Python
Published by soutobias about 1 year ago

paidiverpy -

- Python
Published by soutobias about 1 year ago