macapype

PNH segmentation pipelines based on nipype

https://github.com/macatools/macapype

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

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CITATION.cff file
Found CITATION.cff file
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codemeta.json file
Found codemeta.json file
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.zenodo.json file
Found .zenodo.json file
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DOI references
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Academic publication links
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Academic email domains
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Institutional organization owner
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (7.8%) to scientific vocabulary

Keywords

afni ants brain-extraction brain-segmentation fsl mesh mri mri-analysis mri-segmentation nipype primate python spm12

Last synced: 6 months ago · JSON representation ·

Repository

PNH segmentation pipelines based on nipype

Basic Info

Host: GitHub
Owner: Macatools
License: bsd-3-clause
Language: Python
Default Branch: master
Homepage: https://macatools.github.io/macapype/
Size: 71.8 MB

Statistics

Stars: 24
Watchers: 0
Forks: 13
Open Issues: 7
Releases: 158

Topics

afni ants brain-extraction brain-segmentation fsl mesh mri mri-analysis mri-segmentation nipype primate python spm12

Created over 6 years ago · Last pushed 7 months ago

Metadata Files

Readme Citation

README.md

Quick Install

To use it: shell pip install macapype

To develop: shell git clone https://github.com/Macatools/macapype.git cd macapype python setup.py develop

Docker image

shell docker pull macatools/macapype/latest

Documentation

https://macatools.github.io/macapype/

Related to project:

A guide for PNH MRI processing, and in particular, the session on structural MRI processing

Open Science Room OSR 2020 of OHBM congress presentation of macapype

Forum macapype_users

The macapype_users can be be found here (requires a framateam/framagit account, but should be accessible with a github or bitbucket account)

Owner

Name: Macatools
Login: Macatools
Kind: organization

Repositories: 1
Profile: https://github.com/Macatools

Citation (CITATION.cff)

# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: macapype
message: >-
  If you use this software, please cite it using the
  metadata from this file.
type: software
authors:
  - given-names: 'David '
    family-names: Meuner
    email: david.meunier@univ-amu.fr
    affiliation: Institut de Neurosciences de la Timone (AMU/CNRS)
    orcid: 'https://orcid.org/0000-0002-5812-6138'

GitHub Events

Total

Create event: 60
Issues event: 15
Release event: 53
Watch event: 2
Delete event: 1
Issue comment event: 6
Push event: 185
Pull request event: 70

Last Year

Create event: 60
Issues event: 15
Release event: 53
Watch event: 2
Delete event: 1
Issue comment event: 6
Push event: 185
Pull request event: 70

Issues and Pull Requests

Last synced: 6 months ago

All Time

Total issues: 11
Total pull requests: 29
Average time to close issues: almost 2 years
Average time to close pull requests: about 9 hours
Total issue authors: 5
Total pull request authors: 1
Average comments per issue: 0.55
Average comments per pull request: 0.0
Merged pull requests: 23
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 4
Pull requests: 29
Average time to close issues: 12 days
Average time to close pull requests: about 9 hours
Issue authors: 1
Pull request authors: 1
Average comments per issue: 0.25
Average comments per pull request: 0.0
Merged pull requests: 23
Bot issues: 0
Bot pull requests: 0

View more stats

Top Authors

Issue Authors

davidmeunier79 (10)
danjgale (1)
kepkeeloh (1)
julfou81 (1)
Cdefgpku (1)

Pull Request Authors

davidmeunier79 (59)

Top Labels

Issue Labels

enhancement (1)

Pull Request Labels

Packages

Total packages: 1
Total downloads:
- pypi 512 last-month

Total dependent packages: 1
Total dependent repositories: 1
Total versions: 79
Total maintainers: 1

pypi.org: macapype

Pipeline for anatomic processing for macaque

Documentation: https://macapype.readthedocs.io/
License: BSD-3-Clause
Latest release: 0.5.11
published 9 months ago

Versions: 79
Dependent Packages: 1
Dependent Repositories: 1
Downloads: 512 Last month

Rankings

Downloads: 9.2%

Dependent packages count: 10.0%

Average: 13.6%

Dependent repos count: 21.7%

Maintainers (1)

dmeunier