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plantcv-tutorial-tripsacum-seedhead

A tutorial for open source image analysis for phenotyping seedheads of tripsacum dactyloides

https://github.com/danforthcenter/plantcv-tutorial-tripsacum-seedhead

Science Score: 44.0%

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    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
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    .zenodo.json file
    Found .zenodo.json file
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    DOI references
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    Academic publication links
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    JOSS paper metadata
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    Scientific vocabulary similarity
    Low similarity (3.4%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

A tutorial for open source image analysis for phenotyping seedheads of tripsacum dactyloides

Basic Info
  • Host: GitHub
  • Owner: danforthcenter
  • License: cc-by-4.0
  • Language: Jupyter Notebook
  • Default Branch: main
  • Size: 35.1 MB
Statistics
  • Stars: 0
  • Watchers: 2
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created 10 months ago · Last pushed 9 months ago
Metadata Files
Readme License Citation

README.md

Tripsacum Seedhead Analysis

Try our interactive seedhead analysis tutorial. Learn how to extract size tripsacum seedhead and estimate male/female flower part lengths.

test-pr Binder Colab

Tutorial tags/keywords

seed, seedhead, seedhead analysis, shape analysis, tripsacum

Citations

Optional.

Owner

  • Name: Donald Danforth Plant Science Center
  • Login: danforthcenter
  • Kind: organization
  • Location: St. Louis, MO

Our Mission: Improve the Human Condition Through Plant Science

Citation (CITATION.cff) 

cff-version: 1.0.0
message: "If you use this software, please cite it as below."
authors:
- family-names: Schuhl
  given-names: Haley
  affiliation: Donald Danforth Plant Science Center
  orcid: "https://orcid.org/0000-0002-8825-8297"
- family-names: Ellis
  given-names: Martel
  affiliation: The University of Kansas
  orcid: "https://orcid.org/0000-0001-7761-7197"
- family-names: Vergara
  given-names: Isabella
  affiliation: Donald Danforth Plant Science Center
- family-names: Hanlon
  given-names: Molly
  affiliation: Donald Danforth Plant Science Center
  orcid: "https://orcid.org/0000-0002-5616-8203"
- family-names: Woeltjen
  given-names: Stella
  affiliation: Donald Danforth Plant Science Center
  orcid: "https://orcid.org/0009-0003-8790-065X"
- family-names: Miller
  given-names: Allison
  affiliation: Saint Louis University, Donald Danforth Plant Science Center
  orcid: "https://orcid.org/0000-0002-2722-9361"
- family-names: Wagner
  given-names: Maggie
  affiliation: The University of Kansas
  orcid: "https://orcid.org/0000-0002-6924-7226"
- family-names: Bostic
  given-names: Paige
  affiliation: Donald Danforth Plant Science Center
  orcid: "https://orcid.org/0009-0008-7813-7708"
- family-names: Brown
  given-names: Keely
  affiliation: Donald Danforth Plant Science Center
  orcid: "https://orcid.org/0000-0002-5371-5830"
title: "Tripsacum Seedhead Image Analysis Tutorial"
version: 1.0.0
doi: 
date-released: 2025
url: https://github.com/danforthcenter/plantcv-tutorial-tripsacum-seedhead"

GitHub Events

Total
  • Push event: 11
  • Fork event: 1
  • Create event: 2
Last Year
  • Push event: 11
  • Fork event: 1
  • Create event: 2

Dependencies

.github/workflows/ci-tests.yml actions
  • actions/checkout main composite
  • actions/setup-python main composite
requirements.txt pypi
  • ipympl *
  • plantcv *