fl4health - v0.4.0

What's Changed

• Add dynamically created version of clients to examples/ditto_example by @nerdai in https://github.com/VectorInstitute/FL4Health/pull/389
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in https://github.com/VectorInstitute/FL4Health/pull/392
• Fixing typing annotation in Bernoulli sample by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/395
• Creating FedBN client and adding test by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/396
• Updating lock to address requests 2.32.3 vulnerability by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/400
• Potential way to simplify a few things in refactor. by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/401
• State checkpointer refactor by @fatemetkl in https://github.com/VectorInstitute/FL4Health/pull/394
• Moving to Ruff plus a few other small changes. by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/402
• Add new FlexibleClient for added flexibility and migrate pFL and mixins to use this new class by @nerdai in https://github.com/VectorInstitute/FL4Health/pull/398
• Loosening Some Ruff Ignores by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/405
• [chore] Add unit tests for protocols by @nerdai in https://github.com/VectorInstitute/FL4Health/pull/406
• [Refactor] Add fl4health.clients.flexible module by @nerdai in https://github.com/VectorInstitute/FL4Health/pull/408
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in https://github.com/VectorInstitute/FL4Health/pull/409
• Bump mlflow from 2.22.1 to 3.1.0 by @dependabot[bot] in https://github.com/VectorInstitute/FL4Health/pull/410
• [chore] Parallelize smoke tests in Github runners by @nerdai in https://github.com/VectorInstitute/FL4Health/pull/412
• [chore] Simplify cache key in testing workflows to fix broken venv cache by @nerdai in https://github.com/VectorInstitute/FL4Health/pull/415
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in https://github.com/VectorInstitute/FL4Health/pull/416
• Bump ncipollo/release-action from 1.16.0 to 1.18.0 by @dependabot[bot] in https://github.com/VectorInstitute/FL4Health/pull/417
• Updating the CONTRIBUTING.MD with Ruff change by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/418
• Update nnunet example with efficient metrics by @scarere in https://github.com/VectorInstitute/FL4Health/pull/413
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in https://github.com/VectorInstitute/FL4Health/pull/421
• GPFL method by @fatemetkl in https://github.com/VectorInstitute/FL4Health/pull/414
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in https://github.com/VectorInstitute/FL4Health/pull/424
• Some Docs Cleanup, Spelling Corrections, Dependency simplification. by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/423
• [Feature] Add flexible nnunet client and ditto-ify'ed example by @nerdai in https://github.com/VectorInstitute/FL4Health/pull/411
• Bumping version to 0.4.0 for release by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/427

Full Changelog: https://github.com/VectorInstitute/FL4Health/compare/v0.3.2...v0.4.0

- Python
Published by github-actions[bot] 7 months ago

fl4health - v0.3.2

What's Changed

• Upgrading flower to ~1.18.0 by @lotif in https://github.com/VectorInstitute/FL4Health/pull/374
• Bump h11 from 0.14.0 to 0.16.0 by @dependabot in https://github.com/VectorInstitute/FL4Health/pull/378
• Fixing rxrx1 experiments model by @sanaAyrml in https://github.com/VectorInstitute/FL4Health/pull/377
• Synthetic data experiments by @sanaAyrml in https://github.com/VectorInstitute/FL4Health/pull/376
• Small MMD experiment edits by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/380
• Decoupling some unit tests from examples folder by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/382
• Creating a Metrics Module (1/5) by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/366
• Creating Compound Metrics and Expanding our checkpointers (2/5) by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/368
• First attempt at narrowing permissions for the workflows. by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/383
• [Feature] Add BasicClientProtocol and AdaptiveDriftConstrainedMixin by @nerdai in https://github.com/VectorInstitute/FL4Health/pull/384
• [chore] Fix docs_publish.yml permmissions by @nerdai in https://github.com/VectorInstitute/FL4Health/pull/386
• Adding EMA Metric (3/5) by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/369
• Bump flask from 3.1.0 to 3.1.1 by @dependabot in https://github.com/VectorInstitute/FL4Health/pull/387
• Creating Structures for Efficient Binary Classification Metrics and Binary Dice (4/5) by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/370
• Implementing efficient multiclass metrics base and Dice (5/5) by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/371
• [Feature] Add DittoPersonalizedMixin by @nerdai in https://github.com/VectorInstitute/FL4Health/pull/385
• Bumping version for release by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/388

Full Changelog: https://github.com/VectorInstitute/FL4Health/compare/v0.3.1...v0.3.2

- Python
Published by github-actions[bot] 9 months ago

fl4health - v0.3.1

What's Changed

• Setup our docs and host to github pages [CU-868byp419] by @nerdai in https://github.com/VectorInstitute/FL4Health/pull/313
• Fix local plans by @scarere in https://github.com/VectorInstitute/FL4Health/pull/325
• Update README.md by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/326
• [chore] Add code coverage to ci/cd by @nerdai in https://github.com/VectorInstitute/FL4Health/pull/327
• [CI/CD] Swap out our gha for Github releases for a better one by @nerdai in https://github.com/VectorInstitute/FL4Health/pull/328
• [CI/CD] Add codecov.yml to add coverage (passing/failing) check by @nerdai in https://github.com/VectorInstitute/FL4Health/pull/329
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/VectorInstitute/FL4Health/pull/330
• Bump JamesIves/github-pages-deploy-action from 4.6.8 to 4.7.2 by @dependabot in https://github.com/VectorInstitute/FL4Health/pull/333
• [CI/CD] More Codecov configurations by @nerdai in https://github.com/VectorInstitute/FL4Health/pull/334
• Quick hotfix to remedy checkpointing errors by @scarere in https://github.com/VectorInstitute/FL4Health/pull/331
• Resolving Some Warnings in Docs Compilation and Improving Docs Rendering Across the Library by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/335
• Updating the poetry lock and fixing up test. by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/336
• Split tests for apple/intel by @nerdai in https://github.com/VectorInstitute/FL4Health/pull/337
• Turn on cudnn.benchmark to accelerate convolutions by @scarere in https://github.com/VectorInstitute/FL4Health/pull/338
• Better Batch Behavior When Training By Steps by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/341
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/VectorInstitute/FL4Health/pull/339
• Unrestrict ecos version by @scarere in https://github.com/VectorInstitute/FL4Health/pull/344
• [docs] Add missing dataset_path arg in quickstart by @nerdai in https://github.com/VectorInstitute/FL4Health/pull/345
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/VectorInstitute/FL4Health/pull/343
• Bump JamesIves/github-pages-deploy-action from 4.7.2 to 4.7.3 by @dependabot in https://github.com/VectorInstitute/FL4Health/pull/346
• [CI/CD] Docs build trigger on all prs to main by @nerdai in https://github.com/VectorInstitute/FL4Health/pull/350
• Bump ncipollo/release-action from 1.15.0 to 1.16.0 by @dependabot in https://github.com/VectorInstitute/FL4Health/pull/347
• Testing Metric Manager Clear by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/349
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/VectorInstitute/FL4Health/pull/351
• Use mdbook and publish to https://vectorinstitute.github.io/bootcamp-fl-2025/ by @nerdai in https://github.com/VectorInstitute/FL4Health/pull/355
• Adding in some docs for bootcamp participants by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/353
• Fixing an issue with the testclientleveldpbreast_cancer smoke by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/356
• Bump JamesIves/github-pages-deploy-action from 4.1.7 to 4.7.3 by @dependabot in https://github.com/VectorInstitute/FL4Health/pull/357
• Ft/ag bert example by @fatemetkl in https://github.com/VectorInstitute/FL4Health/pull/359
• Some small fixes for W and B integration by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/360
• Changing the way we log process outputs in the smokes. by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/361
• FedLLM Example by @sanaAyrml in https://github.com/VectorInstitute/FL4Health/pull/348
• Centralized training of tabular data by @sanaAyrml in https://github.com/VectorInstitute/FL4Health/pull/362
• Zenodo setup by @nerdai in https://github.com/VectorInstitute/FL4Health/pull/363
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/VectorInstitute/FL4Health/pull/365
• Some small Pre Bootcamp Fixes for the examples by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/372
• [version] bump version to v0.3.1 by @nerdai in https://github.com/VectorInstitute/FL4Health/pull/373

Full Changelog: https://github.com/VectorInstitute/FL4Health/compare/v0.3.0...v0.3.1

- Python
Published by github-actions[bot] 11 months ago

fl4health - pFL combinations, new checkpointing modules, early stopping, more nnUnet integration, way better smoke tests

What's Changed

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/VectorInstitute/FL4Health/pull/267
• Modify LR Scheduler + Test by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/268
• try except block for dataset.json in case nnunet_raw is unavailable by @scarere in https://github.com/VectorInstitute/FL4Health/pull/266
• Bump waitress from 3.0.0 to 3.0.1 by @dependabot in https://github.com/VectorInstitute/FL4Health/pull/269
• Address Shawns CR on previous PR by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/270
• Elapsed time was backwards by @scarere in https://github.com/VectorInstitute/FL4Health/pull/271
• modified progress bar formatting to inherit from flwr formatting by @scarere in https://github.com/VectorInstitute/FL4Health/pull/273
• Modify curr step of LR Scheduler to start at 0 instead of 1 by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/274
• Fix typing on assertion for ReportsManager by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/276
• Changes to Support Expanded Experimentation with FedDG-GA by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/252
• Bump pypa/gh-action-pypi-publish from 1.10.3 to 1.11.0 by @dependabot in https://github.com/VectorInstitute/FL4Health/pull/277
• Adaptive and Fed DG-GA PFL Experimentation by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/251
• Add More Logging To FedDG-GA Strategy by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/272
• Updating the FLamby installation instructions to reflect some changes on their end. by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/275
• Lowercasing torch device variables throughout library when not global by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/279
• Pinning a source of randomness in server-side aggregation. by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/278
• First pass at optionally shutting down server (and remaining clients) on failures by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/280
• Adding a touch of logging for checkpointing errors by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/281
• Bump pypa/gh-action-pypi-publish from 1.11.0 to 1.12.2 by @dependabot in https://github.com/VectorInstitute/FL4Health/pull/284
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/VectorInstitute/FL4Health/pull/282
• More Masked Layers for FedPM by @yc7z in https://github.com/VectorInstitute/FL4Health/pull/283
• Fixing infinite base server test by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/289
• Moving relevant files to use the future annotations import for 'in-class' return values by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/286
• Modified some of the reporting keys and overhauled the wandb reporter by @scarere in https://github.com/VectorInstitute/FL4Health/pull/288
• Small update to FLamby install instructions to avoid cluster failures. by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/287
• Bump aiohttp from 3.10.3 to 3.10.11 by @dependabot in https://github.com/VectorInstitute/FL4Health/pull/290
• Name change for server folder to servers by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/292
• Add resume wandb reporter by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/293
• Update deep mmd client and loss implementation by @sanaAyrml in https://github.com/VectorInstitute/FL4Health/pull/285
• Custom nnunet trainer by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/296
• Bump mlflow from 2.15.1 to 2.16.0 by @dependabot in https://github.com/VectorInstitute/FL4Health/pull/297
• Bump pypa/gh-action-pypi-publish from 1.12.2 to 1.12.3 by @dependabot in https://github.com/VectorInstitute/FL4Health/pull/302
• Converting to masked layers bug fix by @yc7z in https://github.com/VectorInstitute/FL4Health/pull/303
• Server storing FL configs and Consolidating Base Server Functionality by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/294
• Add maxnumvalidation_steps member of config and client and related … by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/304
• Nnunet amp integration by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/305
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/VectorInstitute/FL4Health/pull/306
• Upgrading peotry lock to include jinja update. by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/308
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/VectorInstitute/FL4Health/pull/310
• Consolidating model and state checkpointing on the client and server sides. by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/298
• Mypy Typing Migration and Some typo fixes by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/299
• A few fixes to our Examples by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/300
• Keras vulnerability ignore until there is a fix by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/312
• [CI] Add github action for creating Github release by @nerdai in https://github.com/VectorInstitute/FL4Health/pull/311
• Small download script changes for RxRx1 by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/315
• Smoke test bug fix for Andrei with the state checkpointers by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/316
• [CU-868byqhk5] Fix smoke tests for GPU by @nerdai in https://github.com/VectorInstitute/FL4Health/pull/314
• Pin PyArrow to v^17.0 by @nerdai in https://github.com/VectorInstitute/FL4Health/pull/317
• Rxrx1 research running scripts by @sanaAyrml in https://github.com/VectorInstitute/FL4Health/pull/309
• Move assert statements out of run_smoke_test and into the actual test (for graceful shutdown in case of failure) by @nerdai in https://github.com/VectorInstitute/FL4Health/pull/318
• Add early stop module by @sanaAyrml in https://github.com/VectorInstitute/FL4Health/pull/301
• Bump pypa/gh-action-pypi-publish from 1.12.3 to 1.12.4 by @dependabot in https://github.com/VectorInstitute/FL4Health/pull/324

New Contributors

• @nerdai made their first contribution in https://github.com/VectorInstitute/FL4Health/pull/311

Full Changelog: https://github.com/VectorInstitute/FL4Health/compare/v0.2.2...v0.3.0

- Python
Published by emersodb about 1 year ago

fl4health - Second patch fix for a few small straggler errors

What's Changed

• Move reporting start_time in servers to before fit call by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/261
• Nnunet server patch by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/262
• Make necessary changes to model merge server and client with new repo… by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/263
• Turning follow imports on in mypy for better coverage by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/264

Full Changelog: https://github.com/VectorInstitute/FL4Health/compare/v0.2.1...v0.2.2

- Python
Published by emersodb over 1 year ago

fl4health - Small patch release to include the proper core dependencies in the library toml

What's Changed

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/VectorInstitute/FL4Health/pull/259
• Update dependencies by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/260
• PR4: Add deepmmdloss files by @sanaAyrml in https://github.com/VectorInstitute/FL4Health/pull/170

Full Changelog: https://github.com/VectorInstitute/FL4Health/compare/v0.2.0...v0.2.1

- Python
Published by emersodb over 1 year ago

fl4health - New nnunet integrations, better heterogeneous sampling, MMD constraints, reporter refactors

What's Changed

• Proposed changes to the mkmmd loss function by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/102
• Update MK-MMD Loss Suggestions and Tests by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/181
• CIFAR Experiments PR Suggestions by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/184
• Changed nnunet LR Schedule and fixed memory leak by @scarere in https://github.com/VectorInstitute/FL4Health/pull/222
• Bump nltk from 3.8.1 to 3.9 by @dependabot in https://github.com/VectorInstitute/FL4Health/pull/223
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/VectorInstitute/FL4Health/pull/224
• Created reset signal handler decorator by @scarere in https://github.com/VectorInstitute/FL4Health/pull/225
• Adding a README to the examples folder. by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/226
• Bump pypa/gh-action-pypi-publish from 1.9.0 to 1.10.0 by @dependabot in https://github.com/VectorInstitute/FL4Health/pull/229
• Update requirements by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/230
• Update scaffold by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/231
• Nnunet core refactor by @scarere in https://github.com/VectorInstitute/FL4Health/pull/227
• Bump pypa/gh-action-pypi-publish from 1.10.0 to 1.10.1 by @dependabot in https://github.com/VectorInstitute/FL4Health/pull/233
• Basic client checkpointing and LR Scheduling by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/234
• Add updates for smaller CRs by David by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/236
• Adding in Dirichlet allocation partitioner by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/237
• Expanding ClientCheckpointModule to accept checkpointer sequences by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/239
• Quick update for partitioner to also get a prior rather than sampling by @sanaAyrml in https://github.com/VectorInstitute/FL4Health/pull/242
• PR2: Update mkmmd loss by @sanaAyrml in https://github.com/VectorInstitute/FL4Health/pull/169
• Bump pypa/gh-action-pypi-publish from 1.10.1 to 1.10.2 by @dependabot in https://github.com/VectorInstitute/FL4Health/pull/244
• PR1: Add mkmmd loss by @sanaAyrml in https://github.com/VectorInstitute/FL4Health/pull/168
• Nnunet server checkpointing by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/241
• Revert "Nnunet server checkpointing" by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/245
• Nnunet server checkpointing by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/246
• Adding in synthetic dataset generators based on the original FedProx paper by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/238
• Cleanup picai folder by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/247
• Fix launch scripts by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/248
• PR3: Add cifar10 experiments by @sanaAyrml in https://github.com/VectorInstitute/FL4Health/pull/171
• Adaptive Ditto and MR-MTL by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/235
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/VectorInstitute/FL4Health/pull/249
• Bump pypa/gh-action-pypi-publish from 1.10.2 to 1.10.3 by @dependabot in https://github.com/VectorInstitute/FL4Health/pull/250
• Adding fit end and evaluate end times in the client metrics by @lotif in https://github.com/VectorInstitute/FL4Health/pull/253
• Fixing the tests for Mk-MMD loss such that they still pass properly on a GPU and CPU by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/255
• Reporting restructure by @scarere in https://github.com/VectorInstitute/FL4Health/pull/254

Full Changelog: https://github.com/VectorInstitute/FL4Health/compare/v0.1.17...v0.2.0

- Python
Published by emersodb over 1 year ago

fl4health - New methods, strategies, library support, and more.

There are several big additions in this release. - We now support federated model merging without requiring training - The server-side strategy FLASH is now supported - Native support for FedPM has been implemented - FENDA+Ditto is now available - FedSimCLR is now supported for self-supervised contrastive learning. - A ton of support for nnUnet is now in the library.

What's Changed

• Fix some bugs that slipped through in CR and trying to make type chec… by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/172
• Bump urllib3 from 2.2.1 to 2.2.2 by @dependabot in https://github.com/VectorInstitute/FL4Health/pull/176
• Bump scikit-learn from 1.4.1.post1 to 1.5.0 by @dependabot in https://github.com/VectorInstitute/FL4Health/pull/178
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/VectorInstitute/FL4Health/pull/175
• Fixing Some Pip Audit Issues by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/180
• Fix picai channel ordering by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/179
• Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.9.0 by @dependabot in https://github.com/VectorInstitute/FL4Health/pull/177
• FLASH implementation by @Justinyangjy in https://github.com/VectorInstitute/FL4Health/pull/164
• Picai transfer learning by @scarere in https://github.com/VectorInstitute/FL4Health/pull/174
• simple scripts for eval and pred with nnunet by @scarere in https://github.com/VectorInstitute/FL4Health/pull/183
• FedSimCLR by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/173
• add setupclient call in getparameters if not initialized by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/186
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/VectorInstitute/FL4Health/pull/187
• Picai monai by @scarere in https://github.com/VectorInstitute/FL4Health/pull/188
• Bump certifi from 2024.6.2 to 2024.7.4 by @dependabot in https://github.com/VectorInstitute/FL4Health/pull/190
• Update flwr 1.7 to 1.9 by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/189
• Fenda+Ditto model by @Justinyangjy in https://github.com/VectorInstitute/FL4Health/pull/182
• added epoch hook by @scarere in https://github.com/VectorInstitute/FL4Health/pull/193
• Skin cancer dataset by @Justinyangjy in https://github.com/VectorInstitute/FL4Health/pull/185
• Bump sentry-sdk from 2.5.1 to 2.8.0 by @dependabot in https://github.com/VectorInstitute/FL4Health/pull/194
• Fl nnunet by @scarere in https://github.com/VectorInstitute/FL4Health/pull/192
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/VectorInstitute/FL4Health/pull/196
• Added epoch hook for lr scheduling and made client logs look better by @scarere in https://github.com/VectorInstitute/FL4Health/pull/195
• Model Merge Functionality by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/191
• FedPM by @yc7z in https://github.com/VectorInstitute/FL4Health/pull/197
• Ft/gemini scripts by @fatemetkl in https://github.com/VectorInstitute/FL4Health/pull/206
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/VectorInstitute/FL4Health/pull/203
• Nnunet test by @scarere in https://github.com/VectorInstitute/FL4Health/pull/199
• Nnunet ensemble by @scarere in https://github.com/VectorInstitute/FL4Health/pull/198
• Modified base server to accept sequences of checkpointers by @scarere in https://github.com/VectorInstitute/FL4Health/pull/205
• Bump pypa/gh-action-pip-audit from 1.0.8 to 1.1.0 by @dependabot in https://github.com/VectorInstitute/FL4Health/pull/219
• Updating the README and bump Version Number by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/220
• Added progress bar and fixed bugs by @scarere in https://github.com/VectorInstitute/FL4Health/pull/204
• decreased nltk version from ^3.8.1 to ^3.8.0 by @scarere in https://github.com/VectorInstitute/FL4Health/pull/221

New Contributors

• @scarere made their first contribution in https://github.com/VectorInstitute/FL4Health/pull/174

Full Changelog: https://github.com/VectorInstitute/FL4Health/compare/v0.1.16...v0.1.17

- Python
Published by emersodb over 1 year ago

fl4health - Client Simplifications, PICAI preprocessing, README updates.

What's Changed

• Address mypy issues for DPScaffoldClient by @Justinyangjy in https://github.com/VectorInstitute/FL4Health/pull/147
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/VectorInstitute/FL4Health/pull/148
• Small update to the readme to include new capabilities added by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/150
• Bump requests from 2.31.0 to 2.32.0 by @dependabot in https://github.com/VectorInstitute/FL4Health/pull/153
• Ignoring W and B vulnerability for now by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/154
• part 1 changes for adding training set capabilities for client side evaluation by @Justinyangjy in https://github.com/VectorInstitute/FL4Health/pull/151
• Adding Logo Stuff! by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/158
• nnUNet PICAI by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/155
• Part 2 changes for test dataset by @Justinyangjy in https://github.com/VectorInstitute/FL4Health/pull/156
• Part 1: Extracting a small code refactor from Sana's other work by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/152
• Part 2: Creating New Loss Function Classes by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/159
• Part 3: Migrating Moon Clients to use new losses by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/160
• Part 4: Addition of a loss config and FLamby client simplification by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/161
• Part 5: Officially splitting FENDA and PerFCL clients by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/162
• Add tests for picai transforms and other test fixes by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/165
• Part 6: Adding the Constrained FENDA client by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/163
• Bump tornado from 6.4 to 6.4.1 by @dependabot in https://github.com/VectorInstitute/FL4Health/pull/166

New Contributors

• @Justinyangjy made their first contribution in https://github.com/VectorInstitute/FL4Health/pull/147
• @pre-commit-ci made their first contribution in https://github.com/VectorInstitute/FL4Health/pull/148

Full Changelog: https://github.com/VectorInstitute/FL4Health/compare/v0.1.15...v0.1.16

- Python
Published by emersodb over 1 year ago

fl4health - FedRep, MR-MTL, FedDG-GA, upgrading torch, flwr versions and more!

What's Changed

• Ditto FLamby implementation scripts. by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/112
• Small fix for when sampling dataloaders produce an empty batch. by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/114
• Fixing two small typos by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/118
• Fixing an issue with Opacus modified models and optimizers. by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/119
• Upgrading pycyclops to ^0.2.5 and removing exceptions on pip-audit by @lotif in https://github.com/VectorInstitute/FL4Health/pull/121
• Update torch, flwr and other requirements by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/120
• Displaying all the smoke tests metrics errors at once by @lotif in https://github.com/VectorInstitute/FL4Health/pull/122
• Updating the README to include Ditto by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/123
• AG News Experiments and Basic Client Refactor by @yc7z in https://github.com/VectorInstitute/FL4Health/pull/124
• Adding an implementation for FedDG-GA by @lotif in https://github.com/VectorInstitute/FL4Health/pull/117
• Add MR-MTL Method by @sanaAyrml in https://github.com/VectorInstitute/FL4Health/pull/125
• Updating the start numpy client code. by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/126
• Update tqdm (pip-audit found a vulnerability) by @amrit110 in https://github.com/VectorInstitute/FL4Health/pull/133
• Bump jinja2 from 3.1.3 to 3.1.4 by @dependabot in https://github.com/VectorInstitute/FL4Health/pull/140
• Bump werkzeug from 3.0.1 to 3.0.3 by @dependabot in https://github.com/VectorInstitute/FL4Health/pull/139
• Enable pre-commit ci and add default config by @amrit110 in https://github.com/VectorInstitute/FL4Health/pull/132
• Skip flake8 on pre-commit bot by @lotif in https://github.com/VectorInstitute/FL4Health/pull/141
• Implementing FedRep by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/127
• Adding the ability to specify a checkpointing for models before aggregation. by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/128
• Creating an Opacus specific Checkpointer by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/129
• Forcing better model consistency for Server-side models with Opacus by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/130
• Consolidate Weight Drift Losses by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/131
• Add dependabot config to update github actions by @amrit110 in https://github.com/VectorInstitute/FL4Health/pull/142
• Bump actions/setup-python from 3 to 5 by @dependabot in https://github.com/VectorInstitute/FL4Health/pull/143
• Bump actions/checkout from 3 to 4 by @dependabot in https://github.com/VectorInstitute/FL4Health/pull/144
• Bump actions/cache from 2 to 4 by @dependabot in https://github.com/VectorInstitute/FL4Health/pull/145
• Bump pypa/gh-action-pypi-publish from 1.4.2 to 1.8.14 by @dependabot in https://github.com/VectorInstitute/FL4Health/pull/146

New Contributors

• @dependabot made their first contribution in https://github.com/VectorInstitute/FL4Health/pull/140

Full Changelog: https://github.com/VectorInstitute/FL4Health/compare/v0.1.13...v0.1.15

- Python
Published by emersodb almost 2 years ago

fl4health - Add Ditto, Aggregation utils, PICAI dataset utils

What's Changed

• Aggregation utils to main lib by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/110
• Picai example by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/101
• Implementing Ditto for paper experimentation by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/111
• Increment release version by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/113

Full Changelog: https://github.com/VectorInstitute/FL4Health/compare/v0.1.12...v0.1.13

- Python
Published by jewelltaylor almost 2 years ago

fl4health - Sparse Parameter Exchanger and Federated Autoencoders.

What's Changed

• Relax Floating Point Number Tolerance for PCA test by @yc7z in https://github.com/VectorInstitute/FL4Health/pull/106
• Add separate functions to save aggregated and old local models in Fenda and Moon by @sanaAyrml in https://github.com/VectorInstitute/FL4Health/pull/109
• Sparse Parameter Exchange by @yc7z in https://github.com/VectorInstitute/FL4Health/pull/103
• Federated ae by @fatemetkl in https://github.com/VectorInstitute/FL4Health/pull/82

Full Changelog: https://github.com/VectorInstitute/FL4Health/compare/v0.1.11...v0.1.12

- Python
Published by emersodb almost 2 years ago

fl4health - Smoke Tests, Fed PCA, Small Bug Fixes, README update

What's Changed

• Upgrading jinja2 to 3.1.3 to fix a security issue by @lotif in https://github.com/VectorInstitute/FL4Health/pull/96
• Add federated checkpointing by @sanaAyrml in https://github.com/VectorInstitute/FL4Health/pull/95
• Federated PCA by @yc7z in https://github.com/VectorInstitute/FL4Health/pull/89
• Add a reporter to save the metrics to a parseable file by @lotif in https://github.com/VectorInstitute/FL4Health/pull/92
• Smoke tests: Fix random seed on smoke tests and add asserts on results by @lotif in https://github.com/VectorInstitute/FL4Health/pull/97
• Ignoring one more pillow 9.5.0 vulnerability by @lotif in https://github.com/VectorInstitute/FL4Health/pull/99
• Initial Parameter Retrieval Code Duplication Reduction by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/104
• README Update to include all of the new work! by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/105
• Splitting Loss into EvaluationLoss and TrainLoss by @lotif in https://github.com/VectorInstitute/FL4Health/pull/100
• Update personalized approaches section header by @amrit110 in https://github.com/VectorInstitute/FL4Health/pull/107
• Fixing a small, but significant, bug with MOON. by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/108

Full Changelog: https://github.com/VectorInstitute/FL4Health/compare/v0.1.10...v0.1.11

- Python
Published by emersodb about 2 years ago

fl4health - Federated ensembling, Warmup Modules, Fixed seeds, and a lot of tests

What's Changed

• Add smoke tests for SCAFFOLD, APFL and others, Part 2 by @lotif in https://github.com/VectorInstitute/FL4Health/pull/79
• Smoke tests: display client logs on timeout by @lotif in https://github.com/VectorInstitute/FL4Health/pull/81
• Federated ensemble by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/77
• Fix random seed bug on initialized parameters by @lotif in https://github.com/VectorInstitute/FL4Health/pull/83
• Use poetry as the only source of dependency control by @lotif in https://github.com/VectorInstitute/FL4Health/pull/88
• Fix cyclops module import, adjust dependencies by @amrit110 in https://github.com/VectorInstitute/FL4Health/pull/90
• Add pip-audit to the CI checks by @lotif in https://github.com/VectorInstitute/FL4Health/pull/87
• Add warm up module by @sanaAyrml in https://github.com/VectorInstitute/FL4Health/pull/85
• Flamby experiments by @sanaAyrml in https://github.com/VectorInstitute/FL4Health/pull/86
• Flamby experiments by @sanaAyrml in https://github.com/VectorInstitute/FL4Health/pull/91
• Upgrading gitpython to 3.1.41 to fix a security issue by @lotif in https://github.com/VectorInstitute/FL4Health/pull/93
• Fixing a bug in the FedPer layers to exchange function by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/94

Full Changelog: https://github.com/VectorInstitute/FL4Health/compare/v0.1.9...v0.1.10

- Python
Published by emersodb about 2 years ago

fl4health - Bug fix associated with Basic Client

What's Changed

• Consolidate BasicClient and NumpyFlClient by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/74
• Set seed by @sanaAyrml in https://github.com/VectorInstitute/FL4Health/pull/75
• Build a first pass, basic smoke test associated with one of the examples by @lotif in https://github.com/VectorInstitute/FL4Health/pull/73
• Add smoke tests for SCAFFOLD, APFL and others, Part 1 by @lotif in https://github.com/VectorInstitute/FL4Health/pull/76
• bug fix in basic client by @yc7z in https://github.com/VectorInstitute/FL4Health/pull/80

New Contributors

• @lotif made their first contribution in https://github.com/VectorInstitute/FL4Health/pull/73

Full Changelog: https://github.com/VectorInstitute/FL4Health/compare/v0.1.8...v0.1.9

- Python
Published by emersodb about 2 years ago

fl4health - FedBN, FedPer, MOON, PerFCL and bug fixes

What's Changed

• Updating README by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/51
• Dbe/implement unweighted fedavg by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/52
• Add functionality to support FedBN method by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/53
• Adding in a citation line at the bottom. by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/57
• Refactor of Losses default additional_losses to empty by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/58
• Fixing a bug with the FedProx refactor in FLamby by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/59
• Small fix to the findbesthp.py script by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/60
• Refactor setup client by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/54
• Machinery to support Federated Evaluation Only by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/55
• Add Server-side Checkpointing to Server Base by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/56
• Fix wandb by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/61
• Dbe/setting doc string format by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/64
• Update apfl client by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/62
• Moon by @sanaAyrml in https://github.com/VectorInstitute/FL4Health/pull/66
• Add contrastive losses by @sanaAyrml in https://github.com/VectorInstitute/FL4Health/pull/67
• Feature alignment by @yc7z in https://github.com/VectorInstitute/FL4Health/pull/63
• Create Fixed Requirements File for FLamby, Update Dynamic Weight Exchanger and FedOpt Example by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/68
• Metric refactor by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/69
• Checkpoint Ablation for Flamby by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/71
• FedPer Implementation by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/72

Full Changelog: https://github.com/VectorInstitute/FL4Health/compare/v0.1.7...v0.1.8

- Python
Published by emersodb about 2 years ago

fl4health - FLamby, Partial Layer Exchange, Adaptive FedProx

What's Changed

• Exchanger refactor by @yc7z in https://github.com/VectorInstitute/FL4Health/pull/33
• First shot at fixing the server side parameter initialization issue. by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/37
• Fixing the APFL implementation that occurs if there are frozen layers in a model by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/38
• Adding Tests for the APFL and FENDA layer exchange flow. by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/35
• Expanding the FLamby Experimental Setup by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/34
• Expanding Basic Client by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/36
• Fix FLamby FedAdam NaN Issue on Eval by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/39
• Fixing scaffold on GPU by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/42
• Refactoring the FLamby Code and Adding Fed Heart Disease by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/40
• FLamby Visualization input generation scripts by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/43
• First stab at adding in Open-source licensing by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/44
• Partial exchange example by @yc7z in https://github.com/VectorInstitute/FL4Health/pull/45
• Adding final dataset (Fed IXI) to our experiments. by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/47
• Dp scaffold by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/48
• Add train by epochs option to scaffold client by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/49
• Automate privacy accounting by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/50
• Fed prox adaptive mu by @sanaAyrml in https://github.com/VectorInstitute/FL4Health/pull/46

New Contributors

• @sanaAyrml made their first contribution in https://github.com/VectorInstitute/FL4Health/pull/46

Full Changelog: https://github.com/VectorInstitute/FL4Health/compare/v0.1.6...v0.1.7

- Python
Published by emersodb over 2 years ago

fl4health - v0.1.6

What's Changed

• Dynamic layer exchange by @yc7z in https://github.com/VectorInstitute/FL4Health/pull/31
• Initial pass at FLamby Experimental Design by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/30
• Other metrics by @fatemetkl in https://github.com/VectorInstitute/FL4Health/pull/32

New Contributors

• @fatemetkl made their first contribution in https://github.com/VectorInstitute/FL4Health/pull/32

Full Changelog: https://github.com/VectorInstitute/FL4Health/compare/v0.1.5...v0.1.6

- Python
Published by emersodb over 2 years ago

fl4health - v0.1.5

What's Changed

• Example refactor by @yc7z in https://github.com/VectorInstitute/FL4Health/pull/28
• fixed bug with unpacking parameters and tests by @yc7z in https://github.com/VectorInstitute/FL4Health/pull/29

New Contributors

• @yc7z made their first contribution in https://github.com/VectorInstitute/FL4Health/pull/28

Full Changelog: https://github.com/VectorInstitute/FL4Health/compare/v0.1.4...v0.1.5

- Python
Published by emersodb over 2 years ago

fl4health - Adding in several new methods that deal with non-IID training

What's Changed

• Update client polling by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/18
• Scaffold by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/19
• Adding Configuration to Run Unit Tests on PR by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/21
• Fed Prox and an example of Local Fine Tuning by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/20
• Scripts for Launching Local and Vector Cluster Based FL by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/22
• Patch fix for local fl script by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/24
• Dbe/wandb first integration by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/23
• Cluster FL Script on One Resource by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/25
• Checkpointer: First pass by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/26
• Parameter exchanger packing by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/27

Full Changelog: https://github.com/VectorInstitute/FL4Health/compare/v0.1.3...v0.1.4

- Python
Published by emersodb over 2 years ago

fl4health - Adding in APFL to the library

What's Changed

• Apfl by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/16
• Bumping version number for release 0.1.3 by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/17

Full Changelog: https://github.com/VectorInstitute/FL4Health/compare/v0.1.2...v0.1.3

- Python
Published by emersodb almost 3 years ago

fl4health - Adding in Weighted DP and FENDA capabilities to the library.

What's Changed

• Get sample counts by @jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/11
• FENDA model implementation and other fixes by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/12
• Bumping to version 0.1.2 for release by @emersodb in https://github.com/VectorInstitute/FL4Health/pull/15

Full Changelog: https://github.com/VectorInstitute/FL4Health/compare/v0.1.1...v0.1.2

- Python
Published by emersodb about 3 years ago

fl4health - FL4Health v0.1.1

What's Changed

• Relax torch dependency version to 1.12.1 by @amrit110 in https://github.com/VectorInstitute/FL4Health/pull/14

Full Changelog: https://github.com/VectorInstitute/FL4Health/compare/v0.1.0-alpha...v0.1.1

- Python
Published by amrit110 about 3 years ago

fl4health - Testing PyPi Release

Testing release of the FL4Health library to PyPi. Note: Still waiting on two PRs to merge before release of true v0.1.0

- Python
Published by emersodb about 3 years ago