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metagenomics-shell-workbench

Preview of carpentries-lab/metagenomics-shell transitioned to use the Workbench

https://github.com/tobyhodges/metagenomics-shell-workbench

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 5 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Academic email domains
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    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (6.0%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

Preview of carpentries-lab/metagenomics-shell transitioned to use the Workbench

Basic Info
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  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created 11 months ago · Last pushed 7 months ago
Metadata Files
Readme Contributing License Code of conduct Citation Authors Zenodo

README.md

DOI

Slack Status

The Carpentries Lab Review Status

Introduction to the Command Line for Metagenomics

An introduction lesson to the Unix shell for people working with metagenomics data. This lesson is part of the Metagenomics Workshop.

Contribution

Make a suggestion or correct an error by raising an Issue.

Code of Conduct

All participants should agree to abide by the Data Carpentry Code of Conduct.

Maintainer(s)

Current maintainers of this lesson are

Authors

A list of contributors to the lesson can be found in

Citation

Please cite as:

Claudia Zirión Martínez; Diego Garfias Gallegos; Tania Vanessa Arellano Fernández; Aarón Espinosa Jaime; Edder D Bustos Díaz; José Abel Lovaco Flores; Luis Gerardo Tejero Gómez; J Abraham Avelar Rivas; Nelly Sélem (March , 2023) A Data Carpentry- Style Metagenomics Workshop https://doi.org/10.5281/zenodo.7713413

Owner

  • Name: Toby Hodges
  • Login: tobyhodges
  • Kind: user
  • Location: Heidelberg, Germany
  • Company: @carpentries

Director of Curriculum @carpentries

Citation (CITATION) 

Please cite as:
Nelly Sélem Mojica; Diego Garfias Gallegos; Claudia Zirión Martínez; Jesús Abraham Avelar Rivas; Aaron Jaime Espinosa; Abel Lovaco Flores; Tania Vanessa Arellano Fernandez (2022, Jan). Metagenomics for Software Carpentry lesson, Jan 2022. Zenodo. https://doi.org/10.5281/zenodo.4285900

GitHub Events

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  • Push event: 17
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Dependencies

.github/workflows/pr-close-signal.yaml actions
  • actions/upload-artifact v4 composite
.github/workflows/pr-comment.yaml actions
  • actions/checkout v4 composite
  • carpentries/actions/check-valid-pr main composite
  • carpentries/actions/comment-diff main composite
  • carpentries/actions/download-workflow-artifact main composite
.github/workflows/pr-post-remove-branch.yaml actions
  • carpentries/actions/download-workflow-artifact main composite
  • carpentries/actions/remove-branch main composite
.github/workflows/pr-preflight.yaml actions
  • carpentries/actions/check-valid-pr main composite
  • carpentries/actions/comment-diff main composite
.github/workflows/pr-receive.yaml actions
  • actions/checkout v4 composite
  • actions/upload-artifact v4 composite
  • carpentries/actions/check-valid-pr main composite
  • carpentries/actions/setup-lesson-deps main composite
  • carpentries/actions/setup-sandpaper main composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
.github/workflows/sandpaper-main.yaml actions
  • actions/checkout v4 composite
  • carpentries/actions/setup-lesson-deps main composite
  • carpentries/actions/setup-sandpaper main composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
.github/workflows/update-cache.yaml actions
  • actions/checkout v4 composite
  • carpentries/actions/check-valid-credentials main composite
  • carpentries/actions/update-lockfile main composite
  • carpentries/create-pull-request main composite
  • r-lib/actions/setup-r v2 composite
.github/workflows/update-workflows.yaml actions
  • actions/checkout v4 composite
  • carpentries/actions/check-valid-credentials main composite
  • carpentries/actions/update-workflows main composite
  • carpentries/create-pull-request main composite