Science Score: 44.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
-
○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (14.3%) to scientific vocabulary
Repository
Training Material for Community Reviewers
Basic Info
- Host: GitHub
- Owner: Bioconductor
- License: other
- Language: TeX
- Default Branch: devel
- Homepage: https://contributions.bioconductor.org/
- Size: 771 KB
Statistics
- Stars: 9
- Watchers: 10
- Forks: 19
- Open Issues: 10
- Releases: 0
Metadata Files
README.md
Bioconductor Packages: Guidelines for Developers and Reviewers
Bioconductor's guide for package development, maintenance, and peer review. Read it here.
Contributing
Suggestions and updates
This book contains our guidelines for packages contributed to the Bioconductor suite of packages.
These guidelines are always a work in progress - corrections, suggestions and general improvements are welcome as issue submissions in this repository.
Open discussions are welcome in our Zulip.
You can also suggest changes by editing the .Rmd files that are at the root of this repository and submitting a pull request.
An "Edit this page" link in the side bar on the right of each book chapter will take you directly to the relevant page on the GitHub repository to make such changes.
Please target your pull requests to the devel branch.
Technical details
Deployment is done via GitHub Actions:
- whenever there's a push to
devel, the book is built and its content is then pushed to thegh-pagesbranch.
To preview the book locally - preferably before opening a pull request and while reviewing it - use the following code in an R console with the working directory set to the root of this repository, making sure that all the dependencies of the book are available (see file DESCRIPTION).
r
bookdown::render_book()
Original sources
This book is based on contents from the following original sources:
- https://bioconductor.org
- https://bioconductor.org/developers/package-guidelines/
The template used for this book is credited to the book rOpenSci Packages: Development, Maintenance, and Peer Review:
- https://devguide.ropensci.org/ (deployed book)
- https://github.com/ropensci/dev_guide (source)
Owner
- Name: Bioconductor
- Login: Bioconductor
- Kind: organization
- Website: https://bioconductor.org
- Repositories: 156
- Profile: https://github.com/Bioconductor
Software for the analysis and comprehension of high-throughput genomic data
Citation (citation-file.Rmd)
# The CITATION file {#citation}
Appropriate citations must be included in help pages (e.g., in the see also
section) and vignettes; this aspect of documentation is no different from any
scientific endeavor. The file `inst/CITATION` can be used to specify how a
package is to be cited. If this option is utilized, a maintainer can check
proper formatting of the `CITATION` file by running
`readCitationFile("inst/CITATION")` WITHOUT the package being loaded with a
library call; This must run without error for the citation to be accurately
displayed on the package landing page.
Whether or not a `CITATION` file is present, an automatically-generated citation
will appear on the package landing page on the [_Bioconductor_][] web site. For
optimal formatting of author names (if a `CITATION` file is not present),
specify the package author and maintainer using the `Authors@R` field as
described in the [Writing R Extensions][] manual.
GitHub Events
Total
- Create event: 10
- Issues event: 10
- Watch event: 2
- Delete event: 15
- Member event: 2
- Issue comment event: 10
- Push event: 55
- Pull request review comment event: 5
- Pull request review event: 8
- Pull request event: 41
- Fork event: 4
Last Year
- Create event: 10
- Issues event: 10
- Watch event: 2
- Delete event: 15
- Member event: 2
- Issue comment event: 10
- Push event: 55
- Pull request review comment event: 5
- Pull request review event: 8
- Pull request event: 41
- Fork event: 4
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 46
- Total pull requests: 96
- Average time to close issues: 2 months
- Average time to close pull requests: 14 days
- Total issue authors: 14
- Total pull request authors: 21
- Average comments per issue: 1.72
- Average comments per pull request: 0.61
- Merged pull requests: 80
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 5
- Pull requests: 31
- Average time to close issues: 11 days
- Average time to close pull requests: 5 days
- Issue authors: 4
- Pull request authors: 7
- Average comments per issue: 0.0
- Average comments per pull request: 0.42
- Merged pull requests: 25
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- LiNk-NY (17)
- lshep (11)
- vjcitn (4)
- kevinrue (4)
- DarioS (1)
- Bisaloo (1)
- andregrageda (1)
- PeteHaitch (1)
- sneumann (1)
- lgatto (1)
- llrs (1)
- jorainer (1)
- jwokaty (1)
- mtmorgan (1)
Pull Request Authors
- LiNk-NY (41)
- lshep (26)
- kevinrue (12)
- vjcitn (4)
- jwokaty (2)
- lgatto (2)
- ttriche (2)
- mikelove (2)
- llrs (2)
- jonocarroll (2)
- PeteHaitch (2)
- LTLA (2)
- MalteThodberg (1)
- federicomarini (1)
- Kayla-Morrell (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- BiocStyle * imports
- knitr * imports
- BiocManager * suggests
- BiocStyle * suggests
- bookdown * suggests
- bslib * suggests
- downlit * suggests
- r-lib * suggests
- withr * suggests
- xml2 * suggests
- JamesIves/github-pages-deploy-action v4.3.3 composite
- actions/checkout v3 composite
- r-lib/actions/setup-pandoc v2 composite