Data

Tools

Indexes

Applications

Experiments

Open Source Science

Recent Releases of pmidcite

pmidcite - Major update due to NIH-OPA's iCite data change

What's Changed

  • Major update due to NIH-OPA's iCite data change by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/78
  • Updated build target; Added timetracker hooks by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/74
  • pyproject.toml rather than setup.py by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/75
  • Rm CodeQL & twitter by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/76
  • Update code for NIH-OCC's newly updated format for their citation data by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/77

Full Changelog: https://github.com/dvklopfenstein/pmidcite/compare/v0.0.49...v0.1.2

- Python
Published by dvklopfenstein 7 months ago

pmidcite - v0.0.49

What's Changed

  • Make accessing paper authors better; Changed NIHiCiteEntry data access; get_downloader(...) params; Plumbing; by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/70
  • Update version .48 info by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/72
  • Use pyproject.toml & minor updates by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/73

Full Changelog: https://github.com/dvklopfenstein/pmidcite/compare/v0.0.48...v0.0.49

- Python
Published by dvklopfenstein 10 months ago

pmidcite - v0.0.48

What's Changed

  • v0.0.47 by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/62
  • v0.0.47 by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/63
  • v0.0.47 by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/64
  • updates by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/65
  • Update apikey; If rsp is not json, text, or asn.1, return dict from xml format by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/68
  • Update version to 2024-02-05 v0.0.48 by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/69

Full Changelog: https://github.com/dvklopfenstein/pmidcite/compare/v0.0.47...v0.0.48

- Python
Published by dvklopfenstein about 2 years ago

pmidcite - v0.0.47

What's Changed

  • Update codeql-analysis.yml by @manodeep in https://github.com/dvklopfenstein/pmidcite/pull/54
  • GNU Affero General Public License v3.0 (GNU AGPLv3) & more Copyrights by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/56
  • Pytest; getindexs fnc; summarizepapers; Copyright cleanup; Add QUERY to summary prints by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/59
  • author tidy; new v0.0.47 by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/61
  • Run workflow by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/60

New Contributors

  • @manodeep made their first contribution in https://github.com/dvklopfenstein/pmidcite/pull/54

Full Changelog: https://github.com/dvklopfenstein/pmidcite/compare/v0.0.43...v0.0.47

- Python
Published by dvklopfenstein over 2 years ago

pmidcite - v0.0.46

What's Changed

  • Update codeql-analysis.yml by @manodeep in https://github.com/dvklopfenstein/pmidcite/pull/54
  • GNU Affero General Public License v3.0 (GNU AGPLv3) & more Copyrights by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/56
  • Pytest; getindexs fnc; summarizepapers; Copyright cleanup; Add QUERY to summary prints by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/59
  • Run workflow by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/60

New Contributors

  • @manodeep made their first contribution in https://github.com/dvklopfenstein/pmidcite/pull/54

Full Changelog: https://github.com/dvklopfenstein/pmidcite/compare/v0.0.43...v0.0.46

- Python
Published by dvklopfenstein over 2 years ago

pmidcite - v0.0.43 Improve 'icite --print_keys' documentation

What's Changed

  • renamed x, y, z in YEAR/citations/references section #51 by @scbarrera in https://github.com/dvklopfenstein/pmidcite/pull/52
  • Approved @scbarrera's PR by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/53

New Contributors

  • @scbarrera made their first contribution in https://github.com/dvklopfenstein/pmidcite/pull/52

Thank you so much @scbarrera for your PR.
Thank you @Raefcon for opening issue https://github.com/dvklopfenstein/pmidcite/issues/50 to begin working on a new PR.

Full Changelog: https://github.com/dvklopfenstein/pmidcite/compare/v0.0.42...v0.0.43

- Python
Published by dvklopfenstein about 3 years ago

pmidcite - v0.0.42

What's Changed

  • added aummarize script by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/48
  • Summarize NIH citation data for a set of PMIDs by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/49
  • Added Python package, requests, as a pre-requisite
  • Change API to NCBI E-utils such that a missing Local ID (LID) is ignored

Full Changelog: https://github.com/dvklopfenstein/pmidcite/compare/v0.0.41...v0.0.42

- Python
Published by dvklopfenstein about 3 years ago

pmidcite - v0.0.41

What's Changed

  • Move script modules into new pmidcite.script by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/46
  • v0.0.41 contains latest setup.py for local install make target by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/47

Thanks to @KuechlerO for his time in opening issues #42 & #43 and for confirming the fix

Full Changelog: https://github.com/dvklopfenstein/pmidcite/compare/v0.0.40...v0.0.41

- Python
Published by dvklopfenstein about 3 years ago

pmidcite - icite script available (as well as legacy icite.py)

Placed icite script internals in new module, pmidcite.scripts.icte, for easier access from setup.py consolescripts entrypoints.

Thank you to @KuechlerO for taking the time to open issues #42 and #43.

This release is intended to address #42 and #43

Full Changelog: https://github.com/dvklopfenstein/pmidcite/compare/v0.0.38...v0.0.40

- Python
Published by dvklopfenstein about 3 years ago

pmidcite - v0.0.38 Installation script, icite; First make target is local installation

What's Changed

  • v0.0.38 Move install to first make target; Add icite to console scripts by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/44

Full Changelog: https://github.com/dvklopfenstein/pmidcite/compare/v0.0.37...v0.0.38

- Python
Published by dvklopfenstein about 3 years ago

pmidcite - v0.0.37 Removed package in setup which is not implemented

What's Changed

  • v0.0.37 Removed package in setup which is not implemented by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/41

Full Changelog: https://github.com/dvklopfenstein/pmidcite/compare/v0.0.36...v0.0.37

- Python
Published by dvklopfenstein over 3 years ago

pmidcite - Change citation number on GitHub repo card

- Python
Published by dvklopfenstein over 3 years ago

pmidcite - Add more detail to visual abstract

What's Changed

  • Added more details to pmidcite project visual abstract by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/30
  • Added more detail to visual abstract by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/31

Full Changelog: https://github.com/dvklopfenstein/pmidcite/compare/v0.0.33...v0.0.35

- Python
Published by dvklopfenstein almost 4 years ago

pmidcite - Turbocharge your PubMed literature search

What's Changed

  • Augment->Turbocharge in README.md and GitHub page by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/29

Full Changelog: https://github.com/dvklopfenstein/pmidcite/compare/v0.0.32...v0.0.33

- Python
Published by dvklopfenstein almost 4 years ago

pmidcite - Update peer-review paper info README and GitHub pages

What's Changed

  • Updated peer-reviewed paper in README by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/26
  • Version 32 by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/27

Full Changelog: https://github.com/dvklopfenstein/pmidcite/compare/v0.0.30...v0.0.31

- Python
Published by dvklopfenstein almost 4 years ago

pmidcite - v0.0.30

What's Changed

  • print api error messages, if exist by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/13
  • NIH -> National Institutes of Health by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/14
  • Differentiate between NIH and NIH-OCC by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/15
  • Link fmt in README.md by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/16-21
  • What is pmid2cite doing with your data? by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/22-23
  • Readme intro paragraph formatting for search engine summaries by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/24
  • v0031 by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/25

Full Changelog: https://github.com/dvklopfenstein/pmidcite/compare/v0.0.29...v0.0.30

- Python
Published by dvklopfenstein almost 4 years ago

pmidcite - v0.0.29

What's Changed

  • Capitalize keywords in index file; Report 2nd author if present by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/7
  • Dvk by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/8
  • Group 4 (top group) color like in gaussian curve plot by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/9
  • Add contact by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/10
  • Format README (minor) by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/11
  • version 0.0.29 by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/12

Full Changelog: https://github.com/dvklopfenstein/pmidcite/compare/v0.0.21...v0.0.29

- Python
Published by dvklopfenstein about 4 years ago

pmidcite - v0.0.21

What's Changed

  • William -> Will in pdfs by @dvklopfenstein in https://github.com/dvklopfenstein/pmidcite/pull/6

New Contributors

  • @dvklopfenstein made their first contribution in https://github.com/dvklopfenstein/pmidcite/pull/6

Full Changelog: https://github.com/dvklopfenstein/pmidcite/compare/v0.0.20...v0.0.21

- Python
Published by dvklopfenstein over 4 years ago

pmidcite - Download PMIDs from PubMed query FAST

- Python
Published by dvklopfenstein over 4 years ago

pmidcite - Added CITATION.cff and Google Search Console tag

- Python
Published by dvklopfenstein over 4 years ago

pmidcite - 4x speed improvement when downloading papers plus citations and references

- Python
Published by dvklopfenstein over 4 years ago

pmidcite - Added "online-always" mode to quickly download the latest NIH citation data 

Added an "online-always" mode to always download the latest NIH citation data,
tripling the speed of the software by not writing data to temporary working files
for later offline use.

The default mode is now: "online-always."
The current "online/offline" mode is now made an option.

- Python
Published by dvklopfenstein over 4 years ago

pmidcite - Fixed download issue for PMIDs w/no NIH citation data

- Python
Published by dvklopfenstein over 4 years ago

pmidcite - Simplify code by instantiating NIHiCiteDownloader directly

- Python
Published by dvklopfenstein over 4 years ago

pmidcite - TBD: Switch to setup.py: console_scripts in the future

- Python
Published by dvklopfenstein over 4 years ago

pmidcite - Updated notebooks w/new grouping customizability

- Python
Published by dvklopfenstein over 4 years ago

pmidcite - Improve configuration file documentation

- Python
Published by dvklopfenstein over 4 years ago

pmidcite - icite line report's 1st citation count includes cited_by_clin

- Python
Published by dvklopfenstein about 5 years ago

pmidcite - Added paper links to README. Added researcher get functions.

1. Main README: Added links to research paper references. Added to and improved documentation

2. Added notes regarding external pmid2cite Web Application It is unclear who is running it and what they are doing with the data it collects

3. Added getter functions for sleeker library experience

- Python
Published by dvklopfenstein about 5 years ago

pmidcite - Published: 10.1002/jrsm.1456 and 10.1002/jrsm.1457

Code and documentation updates post publication on Friday, October 9, 2020 of two papers:

  1. Commentary to Gusenbauer and Haddaway 2020: Evaluating Retrieval Qualities of PubMed and Google Scholar
    Klopfenstein DV and Dampier W
    2020 | Research Synthesis Methods | PMID: 33031632 | DOI: 10.1002/jrsm.1456

  2. The response to our commentary:
    What every Researcher should know about Searching – Clarified Concepts, Search Advice, and an Agenda to improve Finding in Academia
    Gusenbauer M and Haddaway N
    2020 | Research Synthesis Methods | PMID: 33031639 | DOI: 10.1002/jrsm.1457

- Python
Published by dvklopfenstein over 5 years ago

pmidcite - Initial PyPI package release

- Python
Published by dvklopfenstein over 5 years ago

pmidcite - Pre-launch

The peer-reviewed paper has been accepted and will soon be published

- Python
Published by dvklopfenstein over 5 years ago