awesome-virome - Monthly Changelog: August 2025 - September 2025

Changelog for Monthly Changelog: August 2025 - September 2025

Added Tools

No new tools added during this period.

Updated Tools

• CheckV
• VirMatcher
• VirSorter2
• AMRFinder
• AlphaFold-Multimer
• Amplicon
• Ancient
• Antimicrobial
• BACPHLIP
• BERTax
• BLAST+DIAMOND
• BVBRC
• BacteriophageHostPrediction
• CHARMM-GUI
• CHERRY-models - Updated to version 3.41.2
• CHERRY - Updated to version 3.41.2
• CHVD
• COBRA
• CRISPR
• Cenote-Taker
• Cenote-Taker
• CheckV
• Classiphages
• CliqueSNV
• CloVR-Microbe
• Cloud-based
• CoCoNet - Updated to version 3.37.3
• CovidMD
• CrisprOpenDB - Updated to version 3.37.3
• Cyberinfrastructure
• DBSCAN-SWA - Updated to version 3.41.2
• DRAD
• DRAMv
• Dark
• DarkVirome
• Databases
• DePP
• DePhT
• DeePaC-Live
• DeePaC
• Deep6
• DeepHost
• DeepVHPPI
• DeepVirFinder-models
• DeepVirFinder
• EVE - Updated to version 3.41.0
• Earth
• EpiDOCK
• Evolutionary
• FAVITES-Lite
• FAVITES
• FDA
• FastViromeExplorer
• Functional
• GLIMMER
• GOV-RNA
• GOV2.0
• GPDB
• GVD
• Gene
• GeneMarkS-2
• GeneMarkS
• Genome
• Genome
• Genome
• Genome
• Genome
• Genome
• GenomePeek
• GlyConnect
• GlycoProtViz
• GraViTy
• HNADOCK
• HOPS
• HoloVir
• Host
• HostG
• HostPhinder
• I-TASSER - Updated to version 3.37.3
• ICTV
• IDseq - Updated to version 3.41.2
• IEDB-tools
• INFH-VH
• INHERIT
• INSaFLU-TELEVIR
• Integrated
• Interaction
• Jaeger
• Jovian
• KEGG
• LazyPipe
• Lifestyle
• LysoPhD
• MARVEL
• MAVERIC
• MVP
• MaGplotR
• Machine
• MetaCerberus
• MetaPhinder
• MetaPhlAn
• MetaProdigal
• Metagenome
• Multiple
• NAMD-VIRAL
• NCBI
• NCBI
• NetMHCpan
• NetNGlyc
• OLGenie - Updated to version 3.41.2
• Other
• PB-LKS
• PHACTS
• PHAMB
• PHANOTATE-AMR
• PHANOTATE
• PHASTER - Updated to version 3.41.0
• PHERI - Updated to version 3.37.3
• PHIAF
• PHISDetector
• PHIST
• PHP
• PHPGCA
• PHRED
• PHROGs
• PIGv
• PPR-Meta
• Paleovirology
• PastML
• PhANNs - Updated to version 3.37.3
• PhaBox
• PhaGCN - Updated to version 3.37.3
• PhaTYP-models
• Phables
• Phage
• Phage-specific
• PhageAI
• PhageBoost
• PhageClouds
• PhageDPO
• PhageHostLearn
• PhagePromoter
• PhageRBPdetect
• PhageTB
• PhageTerm - Updated to version 3.37.3
• PhageWeb
• PhagesDB
• Phanotate
• Phanta - Updated to version 3.37.3
• Pharokka - Updated to version 3.41.2
• PhiSpy
• Phigaro - Updated to version 3.37.3
• Plaque
• PlaqueSizeTool
• PlaqueSizeTool
• PredPHI
• Prodigal
• Prophage
• Prophet
• Prophinder
• QuRe
• Quality
• RNA
• RNA-Virus-Flow
• RaFaH
• RdRp-scan
• Recentrifuge
• Reference
• Reference
• ResFinder
• SIB
• SNPGenie
• Seeker
• Sequence
• Sequence
• Sequence
• Serratus
• ShoRAH
• Simulation
• SpacePHARER
• Sphae
• SpikeHunter
• Structural
• Taxonomy
• TepiTool
• TrIdent
• Transduction
• UniProt
• V-pipe
• VAPiD
• VCFgenie
• VEGA
• VFM
• VGAS - Updated to version 3.37.3
• VIBRANT
• VICTOR
• VIDHOP
• VIGA - Updated to version 3.37.3
• VIGOR
• VIP
• VIPERA - Updated to version 1.2.0
• VIPERdb
• VIPtree
• VIRALpro - Updated to version 3.37.3
• VIRIDIC - Updated to version 3.37.3
• VIRMOTIF - Updated to version 3.37.3
• VIRify
• VMD-Viral
• VPF
• VStrains
• ViQuaS
• VirAMR
• VirFinder
• VirHostMatcher-Net
• VirHostMatcher
• VirMatcher
• VirMet
• VirMine-RNA
• VirMine
• VirNet
• VirSorter-DarkMatter
• VirSorter
• VirSorter2
• ViraMiner-models
• Viral
• Viral
• Viral
• Viral
• Viral
• Viral
• Viral
• Viral
• Viral
• Viral-NGS
• Viral-Track
• ViralCC
• ViralConsensus
• ViralMSA
• ViralWasm
• Virhunter
• Virion
• ViroProfiler - Updated to version 3.41.2
• ViromeDB
• ViromeQC
• Virosaurus
• Virtifier
• Virtus
• ViruSpy
• Virus
• Virus
• Virus
• Virus
• VirusSeeker
• VirusTAP
• VirusTaxo - Updated to version 3.37.3
• Viruses.String
• Visualization
• VogDB
• WIsH
• Whatthephage - Updated to version 3.41.2
• academic_impact - Updated to version 3.41.2
• coronaSPAdes
• crassus
• efam
• geNomad
• hafeZ - Updated to version 3.37.3
• hecatomb
• iPHoP
• iVirus
• isling
• mMGE
• metaPhage - Updated to version 3.41.2
• metaviralSPAdes-RNA
• metaviralSPAdes
• mulitPHATE
• pGlyco - Updated to version 3.37.3
• pVOGs
• palmID
• phaMers
• phage_finder
• phageboost
• pygenetic_code
• rdrpsearch
• scVIRseq
• scViroCap
• summary
• vAMPirus
• vConTACT
• vConTACT2.0
• vHulk - Updated to version 3.40.5
• vRhyme
• virAnnot - Updated to version 3.37.3
• virMiner
• viraMiner
• viralComplete
• viralMetagenomicsPipeline
• viralVerify
• viralintegration
• virus_prediction
• AMRFinder
• AlphaFold-Multimer
• Amplicon
• Ancient
• Antimicrobial
• BACPHLIP
• BERTax
• BLAST+DIAMOND
• BVBRC
• BacteriophageHostPrediction
• CHARMM-GUI
• CHERRY-models
• CHERRY
• CHVD
• COBRA
• CRISPR
• Cenote-Taker
• Cenote-Taker
• CheckV
• Classiphages
• CliqueSNV
• CloVR-Microbe
• Cloud-based
• CoCoNet
• CovidMD
• CrisprOpenDB
• Cyberinfrastructure
• DBSCAN-SWA
• DRAD
• DRAMv
• Dark
• DarkVirome
• Databases
• DePP
• DePhT
• DeePaC-Live
• DeePaC
• Deep6
• DeepHost
• DeepVHPPI
• DeepVirFinder-models
• DeepVirFinder
• EVE
• Earth
• EpiDOCK
• Evolutionary
• FAVITES-Lite
• FAVITES
• FDA
• FastViromeExplorer
• Functional
• GLIMMER
• GOV-RNA
• GOV2.0
• GPDB
• GVD
• Gene
• GeneMarkS-2
• GeneMarkS
• Genome
• Genome
• Genome
• Genome
• Genome
• Genome
• GenomePeek
• GlyConnect
• GlycoProtViz
• GraViTy
• HNADOCK
• HOPS
• HoloVir
• Host
• HostG
• HostPhinder
• I-TASSER
• ICTV
• IDseq
• IEDB-tools
• INFH-VH
• INHERIT
• INSaFLU-TELEVIR
• Integrated
• Interaction
• Jaeger
• Jovian
• KEGG
• LazyPipe
• Lifestyle
• LysoPhD
• MARVEL
• MAVERIC
• MVP
• MaGplotR
• Machine
• MetaCerberus
• MetaPhinder
• MetaPhlAn
• MetaProdigal
• Metagenome
• Multiple
• NAMD-VIRAL
• NCBI
• NCBI
• NetMHCpan
• NetNGlyc
• OLGenie
• Other
• PB-LKS
• PHACTS
• PHAMB
• PHANOTATE-AMR
• PHANOTATE
• PHASTER
• PHERI
• PHIAF
• PHISDetector
• PHIST
• PHP
• PHPGCA
• PHRED
• PHROGs
• PIGv
• PPR-Meta
• Paleovirology
• PastML
• PhANNs
• PhaBox
• PhaGCN
• PhaTYP-models
• Phables
• Phage
• Phage-specific
• PhageAI
• PhageBoost
• PhageClouds
• PhageDPO
• PhageHostLearn
• PhagePromoter
• PhageRBPdetect
• PhageTB
• PhageTerm
• PhageWeb
• PhagesDB
• Phanotate
• Phanta
• Pharokka
• PhiSpy
• Phigaro
• Plaque
• PlaqueSizeTool
• PlaqueSizeTool
• PredPHI
• Prodigal
• Prophage
• Prophet
• Prophinder
• QuRe
• Quality
• RNA
• RNA-Virus-Flow
• RaFaH
• RdRp-scan
• Recentrifuge
• Reference
• Reference
• ResFinder
• SIB
• SNPGenie
• Seeker
• Sequence
• Sequence
• Sequence
• Serratus
• ShoRAH
• Simulation
• SpacePHARER
• Sphae
• SpikeHunter
• Structural
• Taxonomy
• TepiTool
• TrIdent
• Transduction
• UniProt
• V-pipe
• VAPiD
• VCFgenie
• VEGA
• VFM
• VGAS
• VIBRANT
• VICTOR
• VIDHOP
• VIGA
• VIGOR
• VIP
• VIPERA
• VIPERdb
• VIPtree
• VIRALpro
• VIRIDIC
• VIRMOTIF
• VIRify
• VMD-Viral
• VPF
• VStrains
• ViQuaS
• VirAMR
• VirFinder
• VirHostMatcher-Net
• VirHostMatcher
• VirMatcher
• VirMet
• VirMine-RNA
• VirMine
• VirNet
• VirSorter-DarkMatter
• VirSorter
• VirSorter2
• ViraMiner-models
• Viral
• Viral
• Viral
• Viral
• Viral
• Viral
• Viral
• Viral
• Viral
• Viral-NGS
• Viral-Track
• ViralCC
• ViralConsensus
• ViralMSA
• ViralWasm
• Virhunter
• Virion
• ViroProfiler
• ViromeDB
• ViromeQC
• Virosaurus
• Virtifier
• Virtus
• ViruSpy
• Virus
• Virus
• Virus
• Virus
• VirusSeeker
• VirusTAP
• VirusTaxo
• Viruses.String
• Visualization
• VogDB
• WIsH
• Whatthephage
• coronaSPAdes
• crassus
• efam
• geNomad
• hafeZ
• hecatomb
• iPHoP
• iVirus
• isling
• mMGE
• metaPhage
• metaviralSPAdes-RNA
• metaviralSPAdes
• mulitPHATE
• pGlyco
• pVOGs
• palmID
• phaMers
• phage_finder
• phageboost
• pygenetic_code
• rdrpsearch
• scVIRseq
• scViroCap
• statistics
• summary
• vAMPirus
• vConTACT
• vConTACT2.0
• vHulk
• vRhyme
• virAnnot
• virMiner
• viraMiner
• viralComplete
• viralMetagenomicsPipeline
• viralVerify
• viralintegration
• virus_prediction
• https__bitbucket.orgsrouxjgiiphopsrcmain
• iPHoP
• AMRFinder
• AlphaFold-Multimer
• BACPHLIP
• BERTax
• BLAST_DIAMOND
• BVBRC
• BacteriophageHostPrediction
• CHARMM-GUI
• CHERRY-models
• CHERRY
• CHVD
• COBRA
• Cenote-Taker_2 - Updated to version 3.41.2
• Cenote-Taker_3
• CheckV
• Classiphages_2.0
• CliqueSNV
• CloVR-Microbe
• CoCoNet
• CovidMD
• CrisprOpenDB
• DBSCAN-SWA
• DRAD
• DRAMv
• DarkVirome
• DePP
• DePhT
• DeePaC-Live
• DeePaC
• Deep6
• DeepHost
• DeepVHPPI
• DeepVirFinder-models
• DeepVirFinder
• EVE
• Earth_Virome
• EpiDOCK
• FAVITES-Lite
• FAVITES
• FDA_ARGOS
• FastViromeExplorer
• GLIMMER
• GOV-RNA
• GOV2.0
• GPDB
• GVD
• GeneMarkS-2
• GeneMarkS
• GenomePeek
• GlyConnect
• GlycoProtViz
• GraViTy
• HNADOCK
• HOPS
• HoloVir
• HostG
• HostPhinder
• I-TASSER
• ICTVVirusMetadataResourceVMR
• IDseq
• IEDB-tools
• INFH-VH
• INHERIT
• INSaFLU-TELEVIR
• Jaeger
• Jovian
• KEGG_Virus
• LazyPipe
• LysoPhD
• MARVEL
• MAVERIC
• MVP
• MaGplotR
• MetaCerberus
• MetaPhinder
• MetaPhlAn_4.1.0
• MetaProdigal
• NAMD-VIRAL
• NCBI_GenBank
• NCBI_RefSeq
• NetMHCpan
• NetNGlyc
• OLGenie
• PB-LKS
• PHACTS
• PHAMB
• PHANOTATE-AMR
• PHANOTATE
• PHASTER
• PHERI
• PHIAF
• PHISDetector
• PHIST
• PHP
• PHPGCA
• PHRED
• PHROGs
• PIGv
• PPR-Meta
• Paleovirology
• PastML
• PhANNs
• PhaBox
• PhaGCN
• PhaTYP-models
• Phables
• PhageAI
• PhageBoost
• PhageClouds
• PhageDPO
• PhageHostLearn
• PhagePromoter
• PhageRBPdetect
• PhageTB
• PhageTerm
• PhageWeb
• Phage_tools
• PhagesDB
• Phanotate
• Phanta - Updated to version 3.37.3
• Pharokka - Updated to version 3.41.2
• PhiSpy
• Phigaro
• PlaqueSizeTool
• PlaqueSizeTool_colab
• PredPHI
• Prodigal
• Prophage_Tracer
• Prophet
• Prophinder
• QuRe
• RNA-Virus-Flow
• RaFaH
• RdRp-scan
• Recentrifuge
• ReferenceViralDataBaseRVDBnucleicversion
• ReferenceViralDataBaseRVDBproteinversion
• ResFinder
• SIBViralreference_sequences
• SNPGenie
• Seeker
• Serratus
• ShoRAH
• SpacePHARER
• Sphae
• SpikeHunter
• TepiTool
• TrIdent
• UniProtVirusproteomes
• V-pipe
• VAPiD
• VCFgenie
• VEGA
• VFM
• VGAS
• VIBRANT
• VICTOR
• VIDHOP
• VIGA
• VIGOR
• VIP
• VIPERA
• VIPERdb
• VIPtree
• VIRALpro
• VIRIDIC
• VIRMOTIF
• VIRify
• VMD-Viral
• VPF_Tools
• VStrains
• ViQuaS
• VirAMR
• VirFinder
• VirHostMatcher-Net
• VirHostMatcher
• VirMatcher
• VirMet
• VirMine-RNA
• VirMine
• VirNet
• VirSorter-DarkMatter
• VirSorter
• VirSorter2
• ViraMiner-models
• Viral-NGS
• Viral-Track
• ViralCC
• ViralConsensus
• ViralMSA
• ViralWasm
• Viral_Beacon
• Virhunter
• Virion
• ViroProfiler
• ViromeDB
• ViromeQC
• Virosaurus
• Virtifier
• Virtus
• ViruSpy
• VirusSeeker
• VirusTAP
• VirusTaxo - Updated to version 3.37.3
• VirusHostDB
• VirusHostPredict
• VirusPathogenResource_ViPR
• Viruses.String
• VogDB
• WIsH
• Whatthephage
• coronaSPAdes
• crassus
• efam
• geNomad
• hafeZ - Updated to version 3.37.3
• hecatomb
• iPHoP
• iVirus_2.0
• isling
• mMGE
• metaPhage
• metaviralSPAdes-RNA
• metaviralSPAdes
• mulitPHATE
• pGlyco
• pVOGs
• palmID
• phaMers
• phage_finder
• phageboost
• pubmed_citations - Updated to version 3.41.2
• pygenetic_code
• rdrpsearch
• scVIRseq
• scViroCap
• summary
• vAMPirus
• vConTACT
• vConTACT2.0
• vHulk
• vRhyme
• virAnnot
• virMiner
• viraMiner
• viralComplete
• viralMetagenomicsPipeline
• viralVerify
• viralintegration
• virus_prediction
• summary
• vConTACT
• vConTACT2.0

Removed Tools

No tools removed during this period.

Citation Updates

Citation data was updated for the following tools: - AMRFinder - 0 total citations - AlphaFold-Multimer - 0 total citations - Amplicon - Ancient - Antimicrobial - BACPHLIP - BERTax - 0 total citations - BLAST+DIAMOND - 0 total citations - BVBRC - BacteriophageHostPrediction - CHARMM-GUI - CHERRY-models - 0 total citations - CHERRY - 0 total citations - CHVD - COBRA - 0 total citations - CRISPR - Cenote-Taker - Cenote-Taker - CheckV - Classiphages - CliqueSNV - CloVR-Microbe - Cloud-based - CoCoNet - 18 total citations - CovidMD - 0 total citations - CrisprOpenDB - 89 total citations - Cyberinfrastructure - 0 total citations - DBSCAN-SWA - 0 total citations - DRAD - DRAMv - Dark - DarkVirome - Databases - 0 total citations - DePP - 0 total citations - DePhT - 0 total citations - DeePaC-Live - DeePaC - Deep6 - DeepHost - DeepVHPPI - DeepVirFinder-models - DeepVirFinder - EVE - 0 total citations - Earth - EpiDOCK - 55 total citations - Evolutionary - FAVITES-Lite - 0 total citations - FAVITES - 0 total citations - FDA - FastViromeExplorer - 0 total citations - Functional - GLIMMER - GOV-RNA - GOV2.0 - GPDB - 0 total citations - GVD - 0 total citations - Gene - GeneMarkS-2 - GeneMarkS - Genome - Genome - Genome - Genome - Genome - Genome - GenomePeek - 0 total citations - GlyConnect - GlycoProtViz - GraViTy - 0 total citations - HNADOCK - HOPS - 0 total citations - HoloVir - 0 total citations - Host - HostG - HostPhinder - 0 total citations - I-TASSER - 0 total citations - ICTV - IDseq - 0 total citations - IEDB-tools - INFH-VH - INHERIT - 0 total citations - INSaFLU-TELEVIR - 0 total citations - Integrated - Interaction - Jaeger - Jovian - 0 total citations - KEGG - LazyPipe - Lifestyle - LysoPhD - MARVEL - MAVERIC - MVP - 0 total citations - MaGplotR - 0 total citations - Machine - MetaCerberus - 0 total citations - MetaPhinder - MetaPhlAn - MetaProdigal - Metagenome - Multiple - NAMD-VIRAL - NCBI - NCBI - NetMHCpan - NetNGlyc - OLGenie - 0 total citations - Other - PB-LKS - PHACTS - 0 total citations - PHAMB - PHANOTATE-AMR - PHANOTATE - PHASTER - 168 total citations - PHERI - 0 total citations - PHIAF - PHISDetector - 39 total citations - PHIST - PHP - 0 total citations - PHPGCA - PHRED - 0 total citations - PHROGs - PIGv - PPR-Meta - 0 total citations - Paleovirology - 0 total citations - PastML - 0 total citations - PhANNs - 0 total citations - PhaBox - PhaGCN - 88 total citations - PhaTYP-models - Phables - 0 total citations - Phage - Phage-specific - PhageAI - PhageBoost - PhageClouds - PhageDPO - PhageHostLearn - 0 total citations - PhagePromoter - PhageRBPdetect - PhageTB - PhageTerm - 0 total citations - PhageWeb - PhagesDB - Phanotate - Phanta - 0 total citations - Pharokka - 0 total citations - PhiSpy - 0 total citations - Phigaro - 108 total citations - Plaque - PlaqueSizeTool - PlaqueSizeTool - 0 total citations - PredPHI - Prodigal - Prophage - Prophet - 0 total citations - Prophinder - 209 total citations - QuRe - 0 total citations - Quality - RNA - RNA-Virus-Flow - RaFaH - RdRp-scan - Recentrifuge - 0 total citations - Reference - Reference - ResFinder - 5 total citations - SIB - SNPGenie - Seeker - 0 total citations - Sequence - Sequence - Sequence - Serratus - ShoRAH - Simulation - 0 total citations - SpacePHARER - 0 total citations - Sphae - 0 total citations - SpikeHunter - Structural - Taxonomy - 0 total citations - TepiTool - 0 total citations - TrIdent - 14 total citations - Transduction - 0 total citations - UniProt - V-pipe - 0 total citations - VAPiD - 0 total citations - VCFgenie - VEGA - 0 total citations - VFM - 0 total citations - VGAS - 0 total citations - VIBRANT - 0 total citations - VICTOR - VIDHOP - 0 total citations - VIGA - 1 total citations - VIGOR - 0 total citations - VIP - 0 total citations - VIPERA - 0 total citations - VIPERdb - 0 total citations - VIPtree - 0 total citations - VIRALpro - 0 total citations - VIRIDIC - 0 total citations - VIRMOTIF - 22 total citations - VIRify - 0 total citations - VMD-Viral - VPF - VStrains - ViQuaS - 37 total citations - VirAMR - VirFinder - 0 total citations - VirHostMatcher-Net - VirHostMatcher - 0 total citations - VirMatcher - VirMet - VirMine-RNA - VirMine - 0 total citations - VirNet - VirSorter-DarkMatter - 0 total citations - VirSorter - 0 total citations - VirSorter2 - ViraMiner-models - Viral - Viral - Viral - Viral - Viral - Viral - Viral - Viral - Viral - Viral-NGS - 0 total citations - Viral-Track - ViralCC - ViralConsensus - 0 total citations - ViralMSA - 0 total citations - ViralWasm - Virhunter - Virion - 0 total citations - ViroProfiler - 0 total citations - ViromeDB - ViromeQC - Virosaurus - Virtifier - Virtus - 0 total citations - ViruSpy - Virus - Virus - Virus - Virus - VirusSeeker - 112 total citations - VirusTAP - 0 total citations - VirusTaxo - 16 total citations - Viruses.String - Visualization - VogDB - WIsH - 0 total citations - Whatthephage - 29 total citations - academic_impact - 0 total citations - coronaSPAdes - crassus - efam - geNomad - 0 total citations - hafeZ - 0 total citations - hecatomb - 0 total citations - iPHoP - iVirus - isling - mMGE - metaPhage - 0 total citations - metaviralSPAdes-RNA - metaviralSPAdes - mulitPHATE - 0 total citations - pGlyco - 0 total citations - pVOGs - palmID - phaMers - phage_finder - phageboost - pygenetic_code - rdrpsearch - scVIRseq - scViroCap - summary - 1018 total citations - vAMPirus - 0 total citations - vConTACT - 0 total citations - vConTACT2.0 - vHulk - 0 total citations - vRhyme - virAnnot - 0 total citations - virMiner - viraMiner - viralComplete - viralMetagenomicsPipeline - viralVerify - viralintegration - 0 total citations - virus_prediction

Repository Improvements

• Documentation improvements: 1 files changed

- HTML
Published by github-actions[bot] 6 months ago

awesome-virome - Monthly Changelog: July 2025 - August 2025

Changelog for Monthly Changelog: July 2025 - August 2025

Added Tools

No new tools added during this period.

Updated Tools

• AMRFinder
• AlphaFold-Multimer
• BACPHLIP
• BERTax
• BLAST_DIAMOND
• BVBRC
• BacteriophageHostPrediction
• CHARMM-GUI
• CHERRY-models
• CHERRY
• CHVD
• COBRA
• Cenote-Taker_2
• Cenote-Taker_3
• CheckV
• Classiphages_2.0
• CliqueSNV
• CloVR-Microbe
• CoCoNet
• CovidMD
• CrisprOpenDB
• DBSCAN-SWA
• DRAD
• DRAMv
• DarkVirome
• DePP
• DePhT
• DeePaC-Live
• DeePaC
• Deep6
• DeepHost
• DeepVHPPI
• DeepVirFinder-models
• DeepVirFinder
• EVE
• Earth_Virome
• EpiDOCK
• FAVITES-Lite
• FAVITES
• FDA_ARGOS
• FastViromeExplorer
• GLIMMER
• GOV-RNA
• GOV2.0
• GPDB
• GVD
• GeneMarkS-2
• GeneMarkS
• GenomePeek
• GlyConnect
• GlycoProtViz
• GraViTy
• HNADOCK
• HOPS
• HoloVir
• HostG
• HostPhinder
• I-TASSER
• ICTVVirusMetadataResourceVMR
• IDseq
• IEDB-tools
• INFH-VH
• INHERIT
• INSaFLU-TELEVIR
• Jaeger
• Jovian
• KEGG_Virus
• LazyPipe
• LysoPhD
• MARVEL
• MAVERIC
• MVP
• MaGplotR
• MetaCerberus
• MetaPhinder
• MetaPhlAn_4.1.0
• MetaProdigal
• NAMD-VIRAL
• NCBI_GenBank
• NCBI_RefSeq
• NetMHCpan
• NetNGlyc
• OLGenie
• PB-LKS
• PHACTS
• PHAMB
• PHANOTATE-AMR
• PHANOTATE
• PHASTER
• PHERI
• PHIAF
• PHISDetector
• PHIST
• PHP
• PHPGCA
• PHRED
• PHROGs
• PIGv
• PPR-Meta
• Paleovirology
• PastML
• PhANNs
• PhaBox
• PhaGCN
• PhaTYP-models
• Phables
• PhageAI
• PhageBoost
• PhageClouds
• PhageDPO
• PhageHostLearn
• PhagePromoter
• PhageRBPdetect
• PhageTB
• PhageTerm
• PhageWeb
• Phage_tools
• PhagesDB
• Phanotate
• Phanta
• Pharokka
• PhiSpy
• Phigaro
• PlaqueSizeTool
• PlaqueSizeTool_colab
• PredPHI
• Prodigal
• Prophage_Tracer
• Prophet
• Prophinder
• QuRe
• RNA-Virus-Flow
• RaFaH
• RdRp-scan
• Recentrifuge
• ReferenceViralDataBaseRVDBnucleicversion
• ReferenceViralDataBaseRVDBproteinversion
• ResFinder
• SIBViralreference_sequences
• SNPGenie
• Seeker
• Serratus
• ShoRAH
• SpacePHARER
• Sphae
• SpikeHunter
• TepiTool
• TrIdent
• UniProtVirusproteomes
• V-pipe
• VAPiD
• VCFgenie
• VEGA
• VFM
• VGAS
• VIBRANT
• VICTOR
• VIDHOP
• VIGA
• VIGOR
• VIP
• VIPERA
• VIPERdb
• VIPtree
• VIRALpro
• VIRIDIC
• VIRMOTIF
• VIRify
• VMD-Viral
• VPF_Tools
• VStrains
• ViQuaS
• VirAMR
• VirFinder
• VirHostMatcher-Net
• VirHostMatcher
• VirMatcher
• VirMet
• VirMine-RNA
• VirMine
• VirNet
• VirSorter-DarkMatter
• VirSorter
• VirSorter2
• ViraMiner-models
• Viral-NGS
• Viral-Track
• ViralCC
• ViralConsensus
• ViralMSA
• ViralWasm
• Viral_Beacon
• Virhunter
• Virion
• ViroProfiler
• ViromeDB
• ViromeQC
• Virosaurus
• Virtifier
• Virtus
• ViruSpy
• VirusSeeker
• VirusTAP
• VirusTaxo
• VirusHostDB
• VirusHostPredict
• VirusPathogenResource_ViPR
• Viruses.String
• VogDB
• WIsH
• Whatthephage
• coronaSPAdes
• crassus
• efam
• geNomad
• hafeZ
• hecatomb
• iPHoP
• iVirus_2.0
• isling
• mMGE
• metaPhage
• metaviralSPAdes-RNA
• metaviralSPAdes
• mulitPHATE
• pGlyco
• pVOGs
• palmID
• phaMers
• phage_finder
• phageboost
• pubmed_citations
• pygenetic_code
• rdrpsearch
• scVIRseq
• scViroCap
• summary
• vAMPirus
• vConTACT
• vConTACT2.0
• vHulk
• vRhyme
• virAnnot
• virMiner
• viraMiner
• viralComplete
• viralMetagenomicsPipeline
• viralVerify
• viralintegration
• virus_prediction

Removed Tools

No tools removed during this period.

Citation Updates

No citation updates during this period.

Repository Improvements

• Documentation improvements: 1 files changed

- HTML
Published by github-actions[bot] 7 months ago

awesome-virome - Monthly Changelog: June 2025 - July 2025

Changelog for Monthly Changelog: June 2025 - July 2025

Added Tools

No new tools added during this period.

Updated Tools

• AMRFinder
• AlphaFold-Multimer
• BACPHLIP
• BERTax
• BLAST_DIAMOND
• BVBRC
• BacteriophageHostPrediction
• CHARMM-GUI
• CHERRY-models
• CHERRY
• CHVD
• COBRA
• Cenote-Taker_2
• Cenote-Taker_3
• CheckV
• Classiphages_2.0
• CliqueSNV
• CloVR-Microbe
• CoCoNet
• CovidMD
• CrisprOpenDB
• DBSCAN-SWA
• DRAD
• DRAMv
• DarkVirome
• DePP
• DePhT
• DeePaC-Live
• DeePaC
• Deep6
• DeepHost
• DeepVHPPI
• DeepVirFinder-models
• DeepVirFinder
• EVE
• Earth_Virome
• EpiDOCK
• FAVITES-Lite
• FAVITES
• FDA_ARGOS
• FastViromeExplorer
• GLIMMER
• GOV-RNA
• GOV2.0
• GPDB
• GVD
• GeneMarkS-2
• GeneMarkS
• GenomePeek
• GlyConnect
• GlycoProtViz
• GraViTy
• HNADOCK
• HOPS
• HoloVir
• HostG
• HostPhinder
• I-TASSER
• ICTVVirusMetadataResourceVMR
• IDseq
• IEDB-tools
• INFH-VH
• INHERIT
• INSaFLU-TELEVIR
• Jaeger
• Jovian
• KEGG_Virus
• LazyPipe
• LysoPhD
• MARVEL
• MAVERIC
• MVP
• MaGplotR
• MetaCerberus
• MetaPhinder
• MetaPhlAn_4.1.0
• MetaProdigal
• NAMD-VIRAL
• NCBI_GenBank
• NCBI_RefSeq
• NetMHCpan
• NetNGlyc
• OLGenie
• PB-LKS
• PHACTS
• PHAMB
• PHANOTATE-AMR
• PHANOTATE
• PHASTER
• PHERI
• PHIAF
• PHISDetector
• PHIST
• PHP
• PHPGCA
• PHRED
• PHROGs
• PIGv
• PPR-Meta
• Paleovirology
• PastML
• PhANNs
• PhaBox
• PhaGCN
• PhaTYP-models
• Phables
• PhageAI
• PhageBoost
• PhageClouds
• PhageDPO
• PhageHostLearn
• PhagePromoter
• PhageRBPdetect
• PhageTB
• PhageTerm
• PhageWeb
• Phage_tools
• PhagesDB
• Phanotate
• Phanta
• Pharokka
• PhiSpy
• Phigaro
• PlaqueSizeTool
• PlaqueSizeTool_colab
• PredPHI
• Prodigal
• Prophage_Tracer
• Prophet
• Prophinder
• QuRe
• RNA-Virus-Flow
• RaFaH
• RdRp-scan
• Recentrifuge
• ReferenceViralDataBaseRVDBnucleicversion
• ReferenceViralDataBaseRVDBproteinversion
• ResFinder
• SIBViralreference_sequences
• SNPGenie
• Seeker
• Serratus
• ShoRAH
• SpacePHARER
• Sphae
• SpikeHunter
• TepiTool
• TrIdent
• UniProtVirusproteomes
• V-pipe
• VAPiD
• VCFgenie
• VEGA
• VFM
• VGAS
• VIBRANT
• VICTOR
• VIDHOP
• VIGA
• VIGOR
• VIP
• VIPERA
• VIPERdb
• VIPtree
• VIRALpro
• VIRIDIC
• VIRMOTIF
• VIRify
• VMD-Viral
• VPF_Tools
• VStrains
• ViQuaS
• VirAMR
• VirFinder
• VirHostMatcher-Net
• VirHostMatcher
• VirMatcher
• VirMet
• VirMine-RNA
• VirMine
• VirNet
• VirSorter-DarkMatter
• VirSorter
• VirSorter2
• ViraMiner-models
• Viral-NGS
• Viral-Track
• ViralCC
• ViralConsensus
• ViralMSA
• ViralWasm
• Viral_Beacon
• Virhunter
• Virion
• ViroProfiler
• ViromeDB
• ViromeQC
• Virosaurus
• Virtifier
• Virtus
• ViruSpy
• VirusSeeker
• VirusTAP
• VirusTaxo
• VirusHostDB
• VirusHostPredict
• VirusPathogenResource_ViPR
• Viruses.String
• VogDB
• WIsH
• Whatthephage
• coronaSPAdes
• crassus
• efam
• geNomad
• hafeZ
• hecatomb
• iPHoP
• iVirus_2.0
• isling
• mMGE
• metaPhage
• metaviralSPAdes-RNA
• metaviralSPAdes
• mulitPHATE
• pGlyco
• pVOGs
• palmID
• phaMers
• phage_finder
• phageboost
• pubmed_citations
• pygenetic_code
• rdrpsearch
• scVIRseq
• scViroCap
• summary
• vAMPirus
• vConTACT
• vConTACT2.0
• vHulk
• vRhyme
• virAnnot
• virMiner
• viraMiner
• viralComplete
• viralMetagenomicsPipeline
• viralVerify
• viralintegration
• virus_prediction

Removed Tools

No tools removed during this period.

Citation Updates

No citation updates during this period.

Repository Improvements

• Documentation improvements: 1 files changed

- HTML
Published by github-actions[bot] 8 months ago

awesome-virome - Monthly Changelog: May 2025 - June 2025

Changelog for Monthly Changelog: May 2025 - June 2025

Added Tools

• AMRFinder
• AlphaFold-Multimer
• BACPHLIP
• BERTax
• BLAST_DIAMOND
• BVBRC
• BacteriophageHostPrediction
• CHARMM-GUI
• CHERRY-models
• CHERRY
• CHVD
• COBRA
• Cenote-Taker_2
• Cenote-Taker_3
• CheckV
• Classiphages_2.0
• CliqueSNV
• CloVR-Microbe
• CoCoNet
• CovidMD
• CrisprOpenDB
• DBSCAN-SWA
• DRAD
• DRAMv
• DarkVirome
• DePP
• DePhT
• DeePaC-Live
• DeePaC
• Deep6
• DeepHost
• DeepVHPPI
• DeepVirFinder-models
• DeepVirFinder
• EVE
• Earth_Virome
• EpiDOCK
• FAVITES-Lite
• FAVITES
• FDA_ARGOS
• FastViromeExplorer
• GLIMMER
• GOV-RNA
• GOV2.0
• GPDB
• GVD
• GeneMarkS-2
• GeneMarkS
• GenomePeek
• GlyConnect
• GlycoProtViz
• GraViTy
• HNADOCK
• HOPS
• HoloVir
• HostG
• HostPhinder
• I-TASSER
• ICTVVirusMetadataResourceVMR
• IDseq
• IEDB-tools
• INFH-VH
• INHERIT
• INSaFLU-TELEVIR
• Jaeger
• Jovian
• KEGG_Virus
• LazyPipe
• LysoPhD
• MARVEL
• MAVERIC
• MVP
• MaGplotR
• MetaCerberus
• MetaPhinder
• MetaPhlAn_4.1.0
• MetaProdigal
• NAMD-VIRAL
• NCBI_GenBank
• NCBI_RefSeq
• NetMHCpan
• NetNGlyc
• OLGenie
• PB-LKS
• PHACTS
• PHAMB
• PHANOTATE-AMR
• PHANOTATE
• PHASTER
• PHERI
• PHIAF
• PHISDetector
• PHIST
• PHP
• PHPGCA
• PHRED
• PHROGs
• PIGv
• PPR-Meta
• Paleovirology
• PastML
• PhANNs
• PhaBox
• PhaGCN
• PhaTYP-models
• Phables
• PhageAI
• PhageBoost
• PhageClouds
• PhageDPO
• PhageHostLearn
• PhagePromoter
• PhageRBPdetect
• PhageTB
• PhageTerm
• PhageWeb
• Phage_tools
• PhagesDB
• Phanotate
• Phanta
• Pharokka
• PhiSpy
• Phigaro
• PlaqueSizeTool
• PlaqueSizeTool_colab
• PredPHI
• Prodigal
• Prophage_Tracer
• Prophet
• Prophinder
• QuRe
• RNA-Virus-Flow
• RaFaH
• RdRp-scan
• Recentrifuge
• ReferenceViralDataBaseRVDBnucleicversion
• ReferenceViralDataBaseRVDBproteinversion
• ResFinder
• SIBViralreference_sequences
• SNPGenie
• Seeker
• Serratus
• ShoRAH
• SpacePHARER
• Sphae
• SpikeHunter
• TepiTool
• TrIdent
• UniProtVirusproteomes
• V-pipe
• VAPiD
• VCFgenie
• VEGA
• VFM
• VGAS
• VIBRANT
• VICTOR
• VIDHOP
• VIGA
• VIGOR
• VIP
• VIPERA
• VIPERdb
• VIPtree
• VIRALpro
• VIRIDIC
• VIRMOTIF
• VIRify
• VMD-Viral
• VPF_Tools
• VStrains
• ViQuaS
• VirAMR
• VirFinder
• VirHostMatcher-Net
• VirHostMatcher
• VirMatcher
• VirMet
• VirMine-RNA
• VirMine
• VirNet
• VirSorter-DarkMatter
• VirSorter
• VirSorter2
• ViraMiner-models
• Viral-NGS
• Viral-Track
• ViralCC
• ViralConsensus
• ViralMSA
• ViralWasm
• Viral_Beacon
• Virhunter
• Virion
• ViroProfiler
• ViromeDB
• ViromeQC
• Virosaurus
• Virtifier
• Virtus
• ViruSpy
• VirusSeeker
• VirusTAP
• VirusTaxo
• VirusHostDB
• VirusHostPredict
• VirusPathogenResource_ViPR
• Viruses.String
• VogDB
• WIsH
• Whatthephage
• coronaSPAdes
• crassus
• efam
• geNomad
• hafeZ
• hecatomb
• iPHoP
• iVirus_2.0
• isling
• mMGE
• metaPhage
• metaviralSPAdes-RNA
• metaviralSPAdes
• mulitPHATE
• pGlyco
• pVOGs
• palmID
• phaMers
• phage_finder
• phageboost
• pubmed_citations
• pygenetic_code
• rdrpsearch
• scVIRseq
• scViroCap
• summary
• vAMPirus
• vConTACT
• vConTACT2.0
• vHulk
• vRhyme
• virAnnot
• virMiner
• viraMiner
• viralComplete
• viralMetagenomicsPipeline
• viralVerify
• viralintegration
• virus_prediction

Updated Tools

• CheckV
• VirMatcher
• VirSorter2
• AMRFinder
• AlphaFold-Multimer
• Amplicon
• Ancient
• Antimicrobial
• BACPHLIP
• BERTax
• BLAST+DIAMOND
• BVBRC
• BacteriophageHostPrediction
• CHARMM-GUI
• CHERRY-models - Updated to version 3.37.3
• CHERRY - Updated to version 3.37.3
• CHVD
• COBRA - Updated to version 3.28.0
• CRISPR
• Cenote-Taker
• Cenote-Taker
• CheckV
• Classiphages
• CliqueSNV
• CloVR-Microbe
• Cloud-based
• CoCoNet - Updated to version 3.37.3
• CovidMD
• CrisprOpenDB
• Cyberinfrastructure
• DBSCAN-SWA - Updated to version 3.37.3
• DRAD
• DRAMv
• Dark
• DarkVirome
• Databases
• DePP
• DePhT
• DeePaC-Live
• DeePaC
• Deep6
• DeepHost
• DeepVHPPI
• DeepVirFinder-models
• DeepVirFinder
• EVE
• Earth
• EpiDOCK
• Evolutionary
• FAVITES-Lite
• FAVITES
• FDA
• FastViromeExplorer
• Functional
• GLIMMER
• GOV-RNA
• GOV2.0
• GPDB
• GVD
• Gene
• GeneMarkS-2
• GeneMarkS
• Genome
• Genome
• Genome
• Genome
• Genome
• Genome
• GenomePeek
• GlyConnect
• GlycoProtViz
• GraViTy
• HNADOCK
• HOPS
• HoloVir - Updated to version 3.37.3
• Host
• HostG
• HostPhinder
• I-TASSER - Updated to version 3.37.3
• ICTV
• IDseq - Updated to version 3.37.3
• IEDB-tools
• INFH-VH
• INHERIT
• INSaFLU-TELEVIR - Updated to version 3.37.3
• Integrated
• Interaction
• Jaeger
• Jovian - Updated to version 3.28.0
• KEGG
• LazyPipe
• Lifestyle
• LysoPhD
• MARVEL
• MAVERIC
• MVP
• MaGplotR - Updated to version 3.37.3
• Machine
• MetaCerberus
• MetaPhinder
• MetaPhlAn
• MetaProdigal
• Metagenome
• Multiple
• NAMD-VIRAL
• NCBI
• NCBI
• NetMHCpan
• NetNGlyc
• OLGenie
• Other
• PB-LKS
• PHACTS
• PHAMB
• PHANOTATE-AMR
• PHANOTATE
• PHASTER - Updated to version 3.37.3
• PHERI - Updated to version 3.37.3
• PHIAF
• PHISDetector - Updated to version 3.37.3
• PHIST
• PHP
• PHPGCA
• PHRED
• PHROGs
• PIGv
• PPR-Meta
• Paleovirology
• PastML
• PhANNs - Updated to version 3.37.3
• PhaBox
• PhaGCN
• PhaTYP-models
• Phables
• Phage
• Phage-specific
• PhageAI
• PhageBoost
• PhageClouds
• PhageDPO
• PhageHostLearn
• PhagePromoter
• PhageRBPdetect
• PhageTB
• PhageTerm - Updated to version 3.37.3
• PhageWeb
• PhagesDB
• Phanotate
• Phanta
• Pharokka
• PhiSpy
• Phigaro
• Plaque
• PlaqueSizeTool
• PlaqueSizeTool
• PredPHI
• Prodigal
• Prophage
• Prophet
• Prophinder
• QuRe
• Quality
• RNA
• RNA-Virus-Flow
• RaFaH
• RdRp-scan
• Recentrifuge
• Reference
• Reference
• ResFinder
• SIB
• SNPGenie
• Seeker
• Sequence
• Sequence
• Sequence
• Serratus
• ShoRAH
• Simulation
• SpacePHARER
• Sphae - Updated to version 3.37.3
• SpikeHunter
• Structural
• Taxonomy - Updated to version 3.40.4
• TepiTool
• TrIdent
• Transduction
• UniProt
• V-pipe
• VAPiD - Updated to version 3.37.3
• VCFgenie
• VEGA
• VFM
• VGAS - Updated to version 3.37.3
• VIBRANT
• VICTOR
• VIDHOP
• VIGA - Updated to version 3.37.3
• VIGOR
• VIP
• VIPERA
• VIPERdb
• VIPtree
• VIRALpro - Updated to version 3.37.3
• VIRIDIC - Updated to version 3.37.3
• VIRMOTIF - Updated to version 3.37.3
• VIRify - Updated to version 3.37.3
• VMD-Viral
• VPF
• VStrains
• ViQuaS
• VirAMR
• VirFinder
• VirHostMatcher-Net
• VirHostMatcher
• VirMatcher
• VirMet
• VirMine-RNA
• VirMine
• VirNet
• VirSorter-DarkMatter
• VirSorter
• VirSorter2
• ViraMiner-models
• Viral
• Viral
• Viral
• Viral
• Viral
• Viral
• Viral
• Viral
• Viral
• Viral-NGS
• Viral-Track
• ViralCC
• ViralConsensus - Updated to version 3.37.3
• ViralMSA
• ViralWasm
• Virhunter
• Virion
• ViroProfiler
• ViromeDB
• ViromeQC
• Virosaurus
• Virtifier
• Virtus - Updated to version 3.37.3
• ViruSpy
• Virus
• Virus
• Virus
• Virus
• VirusSeeker
• VirusTAP
• VirusTaxo
• Viruses.String
• Visualization
• VogDB
• WIsH
• Whatthephage
• academic_impact - Updated to version 3.40.4
• coronaSPAdes
• crassus
• efam
• geNomad
• hafeZ
• hecatomb
• iPHoP
• iVirus
• isling
• mMGE
• metaPhage
• metaviralSPAdes-RNA
• metaviralSPAdes
• mulitPHATE
• pGlyco - Updated to version 3.37.3
• pVOGs
• palmID
• phaMers
• phage_finder
• phageboost
• pygenetic_code
• rdrpsearch
• scVIRseq
• scViroCap
• summary
• vAMPirus
• vConTACT
• vConTACT2.0
• vHulk
• vRhyme
• virAnnot - Updated to version 3.37.3
• virMiner
• viraMiner
• viralComplete
• viralMetagenomicsPipeline
• viralVerify
• viralintegration
• virus_prediction
• AMRFinder
• AlphaFold-Multimer
• Amplicon
• Ancient
• Antimicrobial
• BACPHLIP
• BERTax
• BLAST+DIAMOND
• BVBRC
• BacteriophageHostPrediction
• CHARMM-GUI
• CHERRY-models
• CHERRY
• CHVD
• COBRA
• CRISPR
• Cenote-Taker
• Cenote-Taker
• CheckV
• Classiphages
• CliqueSNV
• CloVR-Microbe
• Cloud-based
• CoCoNet
• CovidMD
• CrisprOpenDB
• Cyberinfrastructure
• DBSCAN-SWA
• DRAD
• DRAMv
• Dark
• DarkVirome
• Databases
• DePP
• DePhT
• DeePaC-Live
• DeePaC
• Deep6
• DeepHost
• DeepVHPPI
• DeepVirFinder-models
• DeepVirFinder
• EVE
• Earth
• EpiDOCK
• Evolutionary
• FAVITES-Lite
• FAVITES
• FDA
• FastViromeExplorer
• Functional
• GLIMMER
• GOV-RNA
• GOV2.0
• GPDB
• GVD
• Gene
• GeneMarkS-2
• GeneMarkS
• Genome
• Genome
• Genome
• Genome
• Genome
• Genome
• GenomePeek
• GlyConnect
• GlycoProtViz
• GraViTy
• HNADOCK
• HOPS
• HoloVir
• Host
• HostG
• HostPhinder
• I-TASSER
• ICTV
• IDseq
• IEDB-tools
• INFH-VH
• INHERIT
• INSaFLU-TELEVIR
• Integrated
• Interaction
• Jaeger
• Jovian
• KEGG
• LazyPipe
• Lifestyle
• LysoPhD
• MARVEL
• MAVERIC
• MVP
• MaGplotR
• Machine
• MetaCerberus
• MetaPhinder
• MetaPhlAn
• MetaProdigal
• Metagenome
• Multiple
• NAMD-VIRAL
• NCBI
• NCBI
• NetMHCpan
• NetNGlyc
• OLGenie
• Other
• PB-LKS
• PHACTS
• PHAMB
• PHANOTATE-AMR
• PHANOTATE
• PHASTER
• PHERI
• PHIAF
• PHISDetector
• PHIST
• PHP
• PHPGCA
• PHRED
• PHROGs
• PIGv
• PPR-Meta
• Paleovirology
• PastML
• PhANNs
• PhaBox
• PhaGCN
• PhaTYP-models
• Phables
• Phage
• Phage-specific
• PhageAI
• PhageBoost
• PhageClouds
• PhageDPO
• PhageHostLearn
• PhagePromoter
• PhageRBPdetect
• PhageTB
• PhageTerm
• PhageWeb
• PhagesDB
• Phanotate
• Phanta
• Pharokka
• PhiSpy
• Phigaro
• Plaque
• PlaqueSizeTool
• PlaqueSizeTool
• PredPHI
• Prodigal
• Prophage
• Prophet
• Prophinder
• QuRe
• Quality
• RNA
• RNA-Virus-Flow
• RaFaH
• RdRp-scan
• Recentrifuge
• Reference
• Reference
• ResFinder
• SIB
• SNPGenie
• Seeker
• Sequence
• Sequence
• Sequence
• Serratus
• ShoRAH
• Simulation
• SpacePHARER
• Sphae
• SpikeHunter
• Structural
• Taxonomy
• TepiTool
• TrIdent
• Transduction
• UniProt
• V-pipe
• VAPiD
• VCFgenie
• VEGA
• VFM
• VGAS
• VIBRANT
• VICTOR
• VIDHOP
• VIGA
• VIGOR
• VIP
• VIPERA
• VIPERdb
• VIPtree
• VIRALpro
• VIRIDIC
• VIRMOTIF
• VIRify
• VMD-Viral
• VPF
• VStrains
• ViQuaS
• VirAMR
• VirFinder
• VirHostMatcher-Net
• VirHostMatcher
• VirMatcher
• VirMet
• VirMine-RNA
• VirMine
• VirNet
• VirSorter-DarkMatter
• VirSorter
• VirSorter2
• ViraMiner-models
• Viral
• Viral
• Viral
• Viral
• Viral
• Viral
• Viral
• Viral
• Viral
• Viral-NGS
• Viral-Track
• ViralCC
• ViralConsensus
• ViralMSA
• ViralWasm
• Virhunter
• Virion
• ViroProfiler
• ViromeDB
• ViromeQC
• Virosaurus
• Virtifier
• Virtus
• ViruSpy
• Virus
• Virus
• Virus
• Virus
• VirusSeeker
• VirusTAP
• VirusTaxo
• Viruses.String
• Visualization
• VogDB
• WIsH
• Whatthephage
• coronaSPAdes
• crassus
• efam
• geNomad
• hafeZ
• hecatomb
• iPHoP
• iVirus
• isling
• mMGE
• metaPhage
• metaviralSPAdes-RNA
• metaviralSPAdes
• mulitPHATE
• pGlyco
• pVOGs
• palmID
• phaMers
• phage_finder
• phageboost
• pygenetic_code
• rdrpsearch
• scVIRseq
• scViroCap
• statistics
• summary
• vAMPirus
• vConTACT
• vConTACT2.0
• vHulk
• vRhyme
• virAnnot
• virMiner
• viraMiner
• viralComplete
• viralMetagenomicsPipeline
• viralVerify
• viralintegration
• virus_prediction
• https__bitbucket.orgsrouxjgiiphopsrcmain
• iPHoP
• summary
• vConTACT
• vConTACT2.0

Removed Tools

No tools removed during this period.

Citation Updates

Citation data was updated for the following tools: - AMRFinder - 0 total citations - AlphaFold-Multimer - Amplicon - Ancient - Antimicrobial - BACPHLIP - BERTax - BLAST+DIAMOND - 0 total citations - BVBRC - BacteriophageHostPrediction - CHARMM-GUI - CHERRY-models - 43 total citations - CHERRY - 43 total citations - CHVD - COBRA - 0 total citations - CRISPR - Cenote-Taker - Cenote-Taker - CheckV - Classiphages - CliqueSNV - CloVR-Microbe - Cloud-based - CoCoNet - 0 total citations - CovidMD - 0 total citations - CrisprOpenDB - Cyberinfrastructure - 0 total citations - DBSCAN-SWA - 0 total citations - DRAD - DRAMv - Dark - DarkVirome - Databases - 0 total citations - DePP - 0 total citations - DePhT - DeePaC-Live - DeePaC - Deep6 - DeepHost - DeepVHPPI - DeepVirFinder-models - DeepVirFinder - EVE - 8 total citations - Earth - EpiDOCK - 54 total citations - Evolutionary - FAVITES-Lite - FAVITES - FDA - FastViromeExplorer - 0 total citations - Functional - GLIMMER - GOV-RNA - GOV2.0 - GPDB - 0 total citations - GVD - 0 total citations - Gene - GeneMarkS-2 - GeneMarkS - Genome - Genome - Genome - Genome - Genome - Genome - GenomePeek - 0 total citations - GlyConnect - GlycoProtViz - GraViTy - 0 total citations - HNADOCK - HOPS - 0 total citations - HoloVir - 0 total citations - Host - HostG - HostPhinder - 0 total citations - I-TASSER - 0 total citations - ICTV - IDseq - 0 total citations - IEDB-tools - INFH-VH - INHERIT - 0 total citations - INSaFLU-TELEVIR - 0 total citations - Integrated - Interaction - Jaeger - Jovian - 0 total citations - KEGG - LazyPipe - Lifestyle - LysoPhD - MARVEL - MAVERIC - MVP - 0 total citations - MaGplotR - 0 total citations - Machine - MetaCerberus - MetaPhinder - MetaPhlAn - MetaProdigal - Metagenome - Multiple - NAMD-VIRAL - NCBI - NCBI - NetMHCpan - NetNGlyc - OLGenie - 0 total citations - Other - PB-LKS - PHACTS - 0 total citations - PHAMB - PHANOTATE-AMR - PHANOTATE - PHASTER - 0 total citations - PHERI - 0 total citations - PHIAF - PHISDetector - 0 total citations - PHIST - PHP - 0 total citations - PHPGCA - PHRED - 0 total citations - PHROGs - PIGv - PPR-Meta - Paleovirology - 0 total citations - PastML - 0 total citations - PhANNs - 0 total citations - PhaBox - PhaGCN - PhaTYP-models - Phables - 0 total citations - Phage - Phage-specific - PhageAI - PhageBoost - PhageClouds - PhageDPO - PhageHostLearn - 0 total citations - PhagePromoter - PhageRBPdetect - PhageTB - PhageTerm - 0 total citations - PhageWeb - PhagesDB - Phanotate - Phanta - 0 total citations - Pharokka - 0 total citations - PhiSpy - 0 total citations - Phigaro - Plaque - PlaqueSizeTool - PlaqueSizeTool - PredPHI - Prodigal - Prophage - Prophet - 0 total citations - Prophinder - 0 total citations - QuRe - 146 total citations - Quality - RNA - RNA-Virus-Flow - RaFaH - RdRp-scan - Recentrifuge - 0 total citations - Reference - Reference - ResFinder - 0 total citations - SIB - SNPGenie - Seeker - 0 total citations - Sequence - Sequence - Sequence - Serratus - ShoRAH - Simulation - 0 total citations - SpacePHARER - Sphae - 0 total citations - SpikeHunter - Structural - Taxonomy - 0 total citations - TepiTool - 0 total citations - TrIdent - 0 total citations - Transduction - 0 total citations - UniProt - V-pipe - 0 total citations - VAPiD - 0 total citations - VCFgenie - VEGA - 0 total citations - VFM - 0 total citations - VGAS - 0 total citations - VIBRANT - 0 total citations - VICTOR - VIDHOP - VIGA - 0 total citations - VIGOR - 0 total citations - VIP - 0 total citations - VIPERA - VIPERdb - 0 total citations - VIPtree - VIRALpro - 0 total citations - VIRIDIC - 0 total citations - VIRMOTIF - 0 total citations - VIRify - 0 total citations - VMD-Viral - VPF - VStrains - ViQuaS - 37 total citations - VirAMR - VirFinder - 0 total citations - VirHostMatcher-Net - VirHostMatcher - 0 total citations - VirMatcher - VirMet - VirMine-RNA - VirMine - 0 total citations - VirNet - VirSorter-DarkMatter - 0 total citations - VirSorter - 0 total citations - VirSorter2 - ViraMiner-models - Viral - Viral - Viral - Viral - Viral - Viral - Viral - Viral - Viral - Viral-NGS - 0 total citations - Viral-Track - ViralCC - ViralConsensus - 0 total citations - ViralMSA - ViralWasm - Virhunter - Virion - 0 total citations - ViroProfiler - 0 total citations - ViromeDB - ViromeQC - Virosaurus - Virtifier - Virtus - 0 total citations - ViruSpy - Virus - Virus - Virus - Virus - VirusSeeker - 0 total citations - VirusTAP - 57 total citations - VirusTaxo - Viruses.String - Visualization - VogDB - WIsH - 0 total citations - Whatthephage - academic_impact - 0 total citations - coronaSPAdes - crassus - efam - geNomad - 0 total citations - hafeZ - hecatomb - 0 total citations - iPHoP - iVirus - isling - mMGE - metaPhage - 0 total citations - metaviralSPAdes-RNA - metaviralSPAdes - mulitPHATE - pGlyco - 118 total citations - pVOGs - palmID - phaMers - phage_finder - phageboost - pygenetic_code - rdrpsearch - scVIRseq - scViroCap - summary - 506 total citations - vAMPirus - 0 total citations - vConTACT - 0 total citations - vConTACT2.0 - vHulk - 0 total citations - vRhyme - virAnnot - 0 total citations - virMiner - viraMiner - viralComplete - viralMetagenomicsPipeline - viralVerify - viralintegration - 0 total citations - virus_prediction

Repository Improvements

• Workflow improvements: 28 files changed
• Script improvements: 84 files changed
• Documentation improvements: 29 files changed

- HTML
Published by github-actions[bot] 9 months ago

awesome-virome - Monthly Changelog: April 2025 - May 2025

Changelog for Monthly Changelog: April 2025 - May 2025

Added Tools

No new tools added during this period.

Updated Tools

• CheckV
• Phanotate
• VirMatcher
• VirSorter2
• AMRFinder
• AlphaFold-Multimer
• Amplicon
• Ancient
• Antimicrobial
• BACPHLIP
• BERTax
• BLAST+DIAMOND
• BVBRC
• BacteriophageHostPrediction
• CHARMM-GUI
• CHERRY-models - Updated to version 3.37.3
• CHERRY - Updated to version 3.37.3
• CHVD
• COBRA - Updated to version 3.28.0
• CRISPR
• Cenote-Taker
• Cenote-Taker
• CheckV
• Classiphages
• CliqueSNV
• CloVR-Microbe
• Cloud-based
• CoCoNet - Updated to version 3.37.3
• CovidMD
• CrisprOpenDB
• Cyberinfrastructure
• DBSCAN-SWA - Updated to version 3.37.3
• DRAD
• DRAMv
• Dark
• DarkVirome
• Databases
• DePP
• DePhT
• DeePaC-Live
• DeePaC
• Deep6
• DeepHost
• DeepVHPPI
• DeepVirFinder-models
• DeepVirFinder
• EVE
• Earth
• EpiDOCK
• Evolutionary
• FAVITES-Lite
• FAVITES
• FDA
• FastViromeExplorer
• Functional
• GLIMMER
• GOV-RNA
• GOV2.0
• GPDB
• GVD
• Gene
• GeneMarkS-2
• GeneMarkS
• Genome
• Genome
• Genome
• Genome
• Genome
• Genome
• GenomePeek
• GlyConnect
• GlycoProtViz
• GraViTy
• HNADOCK
• HOPS
• HoloVir - Updated to version 3.37.3
• Host
• HostG
• HostPhinder
• I-TASSER - Updated to version 3.37.3
• ICTV
• IDseq - Updated to version 3.37.3
• IEDB-tools
• INFH-VH
• INHERIT
• INSaFLU-TELEVIR - Updated to version 3.37.3
• Integrated
• Interaction
• Jaeger
• Jovian - Updated to version 3.28.0
• KEGG
• LazyPipe
• Lifestyle
• LysoPhD
• MARVEL
• MAVERIC
• MVP
• MaGplotR - Updated to version 3.37.3
• Machine
• MetaCerberus
• MetaPhinder
• MetaPhlAn
• MetaProdigal
• Metagenome
• Multiple
• NAMD-VIRAL
• NCBI
• NCBI
• NetMHCpan
• NetNGlyc
• OLGenie
• Other
• PB-LKS
• PHACTS
• PHAMB
• PHANOTATE-AMR
• PHANOTATE
• PHASTER - Updated to version 3.37.3
• PHERI - Updated to version 3.37.3
• PHIAF
• PHISDetector - Updated to version 3.37.3
• PHIST
• PHP
• PHPGCA
• PHRED
• PHROGs
• PIGv
• PPR-Meta
• Paleovirology
• PastML
• PhANNs - Updated to version 3.37.3
• PhaBox
• PhaGCN
• PhaTYP-models
• Phables
• Phage
• Phage-specific
• PhageAI
• PhageBoost
• PhageClouds
• PhageDPO
• PhageHostLearn
• PhagePromoter
• PhageRBPdetect
• PhageTB
• PhageTerm - Updated to version 3.37.3
• PhageWeb
• PhagesDB
• Phanotate
• Phanta
• Pharokka
• PhiSpy
• Phigaro
• Plaque
• PlaqueSizeTool
• PlaqueSizeTool
• PredPHI
• Prodigal
• Prophage
• Prophet
• Prophinder
• QuRe
• Quality
• RNA
• RNA-Virus-Flow
• RaFaH
• RdRp-scan
• Recentrifuge
• Reference
• Reference
• ResFinder
• SIB
• SNPGenie
• Seeker
• Sequence
• Sequence
• Sequence
• Serratus
• ShoRAH
• Simulation
• SpacePHARER
• Sphae - Updated to version 3.37.3
• SpikeHunter
• Structural
• Taxonomy - Updated to version 3.40.4
• TepiTool
• TrIdent
• Transduction
• UniProt
• V-pipe
• VAPiD - Updated to version 3.37.3
• VCFgenie
• VEGA
• VFM
• VGAS - Updated to version 3.37.3
• VIBRANT
• VICTOR
• VIDHOP
• VIGA - Updated to version 3.37.3
• VIGOR
• VIP
• VIPERA
• VIPERdb
• VIPtree
• VIRALpro - Updated to version 3.37.3
• VIRIDIC - Updated to version 3.37.3
• VIRMOTIF - Updated to version 3.37.3
• VIRify - Updated to version 3.37.3
• VMD-Viral
• VPF
• VStrains
• ViQuaS
• VirAMR
• VirFinder
• VirHostMatcher-Net
• VirHostMatcher
• VirMatcher
• VirMet
• VirMine-RNA
• VirMine
• VirNet
• VirSorter-DarkMatter
• VirSorter
• VirSorter2
• ViraMiner-models
• Viral
• Viral
• Viral
• Viral
• Viral
• Viral
• Viral
• Viral
• Viral
• Viral-NGS
• Viral-Track
• ViralCC
• ViralConsensus - Updated to version 3.37.3
• ViralMSA
• ViralWasm
• Virhunter
• Virion
• ViroProfiler
• ViromeDB
• ViromeQC
• Virosaurus
• Virtifier
• Virtus - Updated to version 3.37.3
• ViruSpy
• Virus
• Virus
• Virus
• Virus
• VirusSeeker
• VirusTAP
• VirusTaxo
• Viruses.String
• Visualization
• VogDB
• WIsH
• Whatthephage
• academic_impact - Updated to version 3.40.4
• coronaSPAdes
• crassus
• efam
• geNomad
• hafeZ
• hecatomb
• iPHoP
• iVirus
• isling
• mMGE
• metaPhage
• metaviralSPAdes-RNA
• metaviralSPAdes
• mulitPHATE
• pGlyco - Updated to version 3.37.3
• pVOGs
• palmID
• phaMers
• phage_finder
• phageboost
• pygenetic_code
• rdrpsearch
• scVIRseq
• scViroCap
• summary
• vAMPirus
• vConTACT
• vConTACT2.0
• vHulk
• vRhyme
• virAnnot - Updated to version 3.37.3
• virMiner
• viraMiner
• viralComplete
• viralMetagenomicsPipeline
• viralVerify
• viralintegration
• virus_prediction
• AMRFinder
• AlphaFold-Multimer
• Amplicon
• Ancient
• Antimicrobial
• BACPHLIP
• BERTax
• BLAST+DIAMOND
• BVBRC
• BacteriophageHostPrediction
• CHARMM-GUI
• CHERRY-models
• CHERRY
• CHVD
• COBRA
• CRISPR
• Cenote-Taker
• Cenote-Taker
• CheckV
• Classiphages
• CliqueSNV
• CloVR-Microbe
• Cloud-based
• CoCoNet
• CovidMD
• CrisprOpenDB
• Cyberinfrastructure
• DBSCAN-SWA
• DRAD
• DRAMv
• Dark
• DarkVirome
• Databases
• DePP
• DePhT
• DeePaC-Live
• DeePaC
• Deep6
• DeepHost
• DeepVHPPI
• DeepVirFinder-models
• DeepVirFinder
• EVE
• Earth
• EpiDOCK
• Evolutionary
• FAVITES-Lite
• FAVITES
• FDA
• FastViromeExplorer
• Functional
• GLIMMER
• GOV-RNA
• GOV2.0
• GPDB
• GVD
• Gene
• GeneMarkS-2
• GeneMarkS
• Genome
• Genome
• Genome
• Genome
• Genome
• GenomePeek
• GlyConnect
• GlycoProtViz
• GraViTy
• HNADOCK
• HOPS
• HoloVir
• Host
• HostG
• HostPhinder
• I-TASSER
• ICTV
• IDseq
• IEDB-tools
• INFH-VH
• INHERIT
• INSaFLU-TELEVIR
• Integrated
• Interaction
• Jaeger
• Jovian
• KEGG
• LazyPipe
• Lifestyle
• LysoPhD
• MARVEL
• MAVERIC
• MVP
• MaGplotR
• Machine
• MetaCerberus
• MetaPhinder
• MetaPhlAn
• MetaProdigal
• Metagenome
• Multiple
• NAMD-VIRAL
• NCBI
• NCBI
• NetMHCpan
• NetNGlyc
• OLGenie
• Other
• PB-LKS
• PHACTS
• PHAMB
• PHANOTATE-AMR
• PHANOTATE
• PHASTER
• PHERI
• PHIAF
• PHISDetector
• PHIST
• PHP
• PHPGCA
• PHRED
• PHROGs
• PIGv
• PPR-Meta
• Paleovirology
• PastML
• PhANNs
• PhaBox
• PhaGCN
• PhaTYP-models
• Phables
• Phage
• Phage-specific
• PhageAI
• PhageBoost
• PhageClouds
• PhageDPO
• PhageHostLearn
• PhagePromoter
• PhageRBPdetect
• PhageTB
• PhageTerm
• PhageWeb
• PhagesDB
• Phanotate
• Phanta
• Pharokka
• PhiSpy
• Phigaro
• Plaque
• PlaqueSizeTool
• PlaqueSizeTool
• PredPHI
• Prodigal
• Prophage
• Prophet
• Prophinder
• QuRe
• Quality
• RNA
• RNA-Virus-Flow
• RaFaH
• RdRp-scan
• Recentrifuge
• Reference
• Reference
• ResFinder
• SIB
• SNPGenie
• Seeker
• Sequence
• Sequence
• Sequence
• Serratus
• ShoRAH
• Simulation
• SpacePHARER
• SpikeHunter
• Structural
• Taxonomy
• TepiTool
• TrIdent
• Transduction
• UniProt
• V-pipe
• VAPiD
• VCFgenie
• VEGA
• VFM
• VGAS
• VIBRANT
• VICTOR
• VIDHOP
• VIGA
• VIGOR
• VIP
• VIPERA
• VIPERdb
• VIPtree
• VIRALpro
• VIRIDIC
• VIRMOTIF
• VIRify
• VMD-Viral
• VPF
• VStrains
• ViQuaS
• VirAMR
• VirFinder
• VirHostMatcher-Net
• VirHostMatcher
• VirMatcher
• VirMet
• VirMine-RNA
• VirMine
• VirNet
• VirSorter-DarkMatter
• VirSorter
• VirSorter2
• ViraMiner-models
• Viral
• Viral
• Viral
• Viral
• Viral
• Viral
• Viral
• Viral
• Viral
• Viral-NGS
• Viral-Track
• ViralCC
• ViralConsensus
• ViralMSA
• ViralWasm
• Virhunter
• Virion
• ViroProfiler
• ViromeDB
• ViromeQC
• Virosaurus
• Virtifier
• Virtus
• ViruSpy
• Virus
• Virus
• Virus
• Virus
• VirusSeeker
• VirusTAP
• VirusTaxo
• Viruses.String
• Visualization
• VogDB
• WIsH
• Whatthephage
• coronaSPAdes
• crassus
• efam
• geNomad
• hafeZ
• hecatomb
• iPHoP
• iVirus
• isling
• mMGE
• metaPhage
• metaviralSPAdes-RNA
• metaviralSPAdes
• mulitPHATE
• pGlyco
• pVOGs
• palmID
• phaMers
• phage_finder
• phageboost
• pygenetic_code
• rdrpsearch
• scVIRseq
• scViroCap
• statistics
• summary
• vAMPirus
• vConTACT
• vConTACT2.0
• vHulk
• vRhyme
• virAnnot
• virMiner
• viraMiner
• viralComplete
• viralMetagenomicsPipeline
• viralVerify
• viralintegration
• virus_prediction
• https__bitbucket.orgsrouxjgiiphopsrcmain
• iPHoP
• summary
• vConTACT
• vConTACT2.0

Removed Tools

No tools removed during this period.

Citation Updates

Citation data was updated for the following tools: - AMRFinder - 0 total citations - AlphaFold-Multimer - Amplicon - Ancient - Antimicrobial - BACPHLIP - BERTax - BLAST+DIAMOND - 0 total citations - BVBRC - BacteriophageHostPrediction - CHARMM-GUI - CHERRY-models - 43 total citations - CHERRY - 43 total citations - CHVD - COBRA - 0 total citations - CRISPR - Cenote-Taker - Cenote-Taker - CheckV - Classiphages - CliqueSNV - CloVR-Microbe - Cloud-based - CoCoNet - 0 total citations - CovidMD - 0 total citations - CrisprOpenDB - Cyberinfrastructure - 0 total citations - DBSCAN-SWA - 0 total citations - DRAD - DRAMv - Dark - DarkVirome - Databases - 0 total citations - DePP - 0 total citations - DePhT - DeePaC-Live - DeePaC - Deep6 - DeepHost - DeepVHPPI - DeepVirFinder-models - DeepVirFinder - EVE - 8 total citations - Earth - EpiDOCK - 54 total citations - Evolutionary - FAVITES-Lite - FAVITES - FDA - FastViromeExplorer - 0 total citations - Functional - GLIMMER - GOV-RNA - GOV2.0 - GPDB - 0 total citations - GVD - 0 total citations - Gene - GeneMarkS-2 - GeneMarkS - Genome - Genome - Genome - Genome - Genome - Genome - GenomePeek - 0 total citations - GlyConnect - GlycoProtViz - GraViTy - 0 total citations - HNADOCK - HOPS - 0 total citations - HoloVir - 0 total citations - Host - HostG - HostPhinder - 0 total citations - I-TASSER - 0 total citations - ICTV - IDseq - 0 total citations - IEDB-tools - INFH-VH - INHERIT - 0 total citations - INSaFLU-TELEVIR - 0 total citations - Integrated - Interaction - Jaeger - Jovian - 0 total citations - KEGG - LazyPipe - Lifestyle - LysoPhD - MARVEL - MAVERIC - MVP - 0 total citations - MaGplotR - 0 total citations - Machine - MetaCerberus - MetaPhinder - MetaPhlAn - MetaProdigal - Metagenome - Multiple - NAMD-VIRAL - NCBI - NCBI - NetMHCpan - NetNGlyc - OLGenie - 0 total citations - Other - PB-LKS - PHACTS - 0 total citations - PHAMB - PHANOTATE-AMR - PHANOTATE - PHASTER - 0 total citations - PHERI - 0 total citations - PHIAF - PHISDetector - 0 total citations - PHIST - PHP - 0 total citations - PHPGCA - PHRED - 0 total citations - PHROGs - PIGv - PPR-Meta - Paleovirology - 0 total citations - PastML - 0 total citations - PhANNs - 0 total citations - PhaBox - PhaGCN - PhaTYP-models - Phables - 0 total citations - Phage - Phage-specific - PhageAI - PhageBoost - PhageClouds - PhageDPO - PhageHostLearn - 0 total citations - PhagePromoter - PhageRBPdetect - PhageTB - PhageTerm - 0 total citations - PhageWeb - PhagesDB - Phanotate - Phanta - 0 total citations - Pharokka - 0 total citations - PhiSpy - 0 total citations - Phigaro - Plaque - PlaqueSizeTool - PlaqueSizeTool - PredPHI - Prodigal - Prophage - Prophet - 0 total citations - Prophinder - 0 total citations - QuRe - 146 total citations - Quality - RNA - RNA-Virus-Flow - RaFaH - RdRp-scan - Recentrifuge - 0 total citations - Reference - Reference - ResFinder - 0 total citations - SIB - SNPGenie - Seeker - 0 total citations - Sequence - Sequence - Sequence - Serratus - ShoRAH - Simulation - 0 total citations - SpacePHARER - Sphae - 0 total citations - SpikeHunter - Structural - Taxonomy - 0 total citations - TepiTool - 0 total citations - TrIdent - 0 total citations - Transduction - 0 total citations - UniProt - V-pipe - 0 total citations - VAPiD - 0 total citations - VCFgenie - VEGA - 0 total citations - VFM - 0 total citations - VGAS - 0 total citations - VIBRANT - 0 total citations - VICTOR - VIDHOP - VIGA - 0 total citations - VIGOR - 0 total citations - VIP - 0 total citations - VIPERA - VIPERdb - 0 total citations - VIPtree - VIRALpro - 0 total citations - VIRIDIC - 0 total citations - VIRMOTIF - 0 total citations - VIRify - 0 total citations - VMD-Viral - VPF - VStrains - ViQuaS - 37 total citations - VirAMR - VirFinder - 0 total citations - VirHostMatcher-Net - VirHostMatcher - 0 total citations - VirMatcher - VirMet - VirMine-RNA - VirMine - 0 total citations - VirNet - VirSorter-DarkMatter - 0 total citations - VirSorter - 0 total citations - VirSorter2 - ViraMiner-models - Viral - Viral - Viral - Viral - Viral - Viral - Viral - Viral - Viral - Viral-NGS - 0 total citations - Viral-Track - ViralCC - ViralConsensus - 0 total citations - ViralMSA - ViralWasm - Virhunter - Virion - 0 total citations - ViroProfiler - 0 total citations - ViromeDB - ViromeQC - Virosaurus - Virtifier - Virtus - 0 total citations - ViruSpy - Virus - Virus - Virus - Virus - VirusSeeker - 0 total citations - VirusTAP - 57 total citations - VirusTaxo - Viruses.String - Visualization - VogDB - WIsH - 0 total citations - Whatthephage - academic_impact - 0 total citations - coronaSPAdes - crassus - efam - geNomad - 0 total citations - hafeZ - hecatomb - 0 total citations - iPHoP - iVirus - isling - mMGE - metaPhage - 0 total citations - metaviralSPAdes-RNA - metaviralSPAdes - mulitPHATE - pGlyco - 118 total citations - pVOGs - palmID - phaMers - phage_finder - phageboost - pygenetic_code - rdrpsearch - scVIRseq - scViroCap - summary - 506 total citations - vAMPirus - 0 total citations - vConTACT - 0 total citations - vConTACT2.0 - vHulk - 0 total citations - vRhyme - virAnnot - 0 total citations - virMiner - viraMiner - viralComplete - viralMetagenomicsPipeline - viralVerify - viralintegration - 0 total citations - virus_prediction

Repository Improvements

• Workflow improvements: 9 files changed
• Script improvements: 11 files changed
• Documentation improvements: 9 files changed

- HTML
Published by github-actions[bot] 10 months ago