Recent Releases of interpolar
interpolar - CDS tool chain v1.1.1
Allgemein
- Bugfixes
- Behebung von Fehler bei der Ansicht im REDCap, bei dem bei Patienten mit min. 2 IP-Fällen immer der nur der erste Fall in REDCap aktualisiert wurde und die Altdaten im REDCap überschrieben wurden.
- Behandlung von NA-Werten für Gültigkeitsdauer und Enddatum korrigiert bei der MRP-Berechnung.
What's Changed
- 891 enable full integration tests with generated redcap data by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/892
- 893 fix redcap repeat instance in fall fe table by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/894
- Develop by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/895
- Release by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/896
Full Changelog: https://github.com/medizininformatik-initiative/INTERPOLAR/compare/v1.1.0...v1.1.1
- PLpgSQL
Published by Flow191 11 months ago
interpolar - CDS tool chain v1.1.0
Allgemein
- Implementierung von DrugDrug und DrugDrugGroup MRP-Berechnungen
Skripte zur MRP-Berechnungen werden nur ausgeführt, wenn min. eine Station in "PhaseB" oder "PhaseBTest" gesetzt ist.
Bugfixes
- Verlegung von Patienten wird in REDCap korrekt angezeigt.
- REDCap interne fehlerhafte Dateninterpretation wird umgangen (doppelte Anführungszeichen (") in Textfeldern).
- Es werden nur noch vom Dataprocessor veränderte Tabellen zurück ins REDCap geschrieben.
- Medikationsresourcen (Request, Administration, Statement) ohne Referenz zu einer Medikation werden ignoriert.
Hinweise
- :warning: Migration von DB erforderlich.
- :warning: Aktualisierung vom INTERPOLAR-WP7 Projekt erforderlich.
What's Changed
- 825 <- main by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/854
- 825 GitHub pages mit GitHub actions erzeugen 1 by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/855
- Update _config.yml by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/856
- Main -> Release by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/858
- main<-release by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/861
- develop<-main by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/862
- 863 old encounter mixed with new encounter by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/866
- Fix different encounters with same redcaprepeatinstance by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/867
- 869 frontend encounters are not updated to finished by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/870
- 872 station wird in redcap nicht korrekt angezeigt by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/874
- 819 calculate drug drug mrps by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/875
- Hanlde NA values in Medication References by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/879
- 880 prevent mrp calculation if all wards are in study phase a by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/881
- 873 db2frontend unrecognized or bad http content or transfer encoding error while processing content unencoding incorrect header check by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/882
- Fix forgotten renamed variable by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/883
- Remove browser by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/884
- 819 calculate drug drug and drug drug group mrps by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/885
- Develop -> Release by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/886
- Release by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/887
Full Changelog: https://github.com/medizininformatik-initiative/INTERPOLAR/compare/v1.0.1...v1.1.0
- PLpgSQL
Published by Flow191 11 months ago
interpolar - CDS tool chain v1.0.1
Allgemein
- Bugfixes
- Gelöschte REDCap-Felder wieder in REDCap und Datenbank eingefügt.
- Berichtigung eines Typos im Spaltennamen "retbewerter2pipeline".
Hinweise
- :warning: Bitte eine Migration des INTERPOLAR REDCap Projektes durchführen. Dazu das neue (REDCap Projekt und DataDictionary v1.0.1 im MII SharePoint) verwenden.
- :warning: Migration von DB erforderlich.
What's Changed
- 825 GitHub pages mit GitHub actions erzeugen 1 by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/830
- main -> develop by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/842
- 841 ingnore non ip ward encounters in db mrp calculations table by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/843
- 847 fix frontend table description by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/848
- Develop by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/849
- Release by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/850
Full Changelog: https://github.com/medizininformatik-initiative/INTERPOLAR/compare/v1.0.0...v1.0.1
- PLpgSQL
Published by Flow191 12 months ago
interpolar - CDS tool chain v1.0.0
Allgemein
- Zuordnung von Station zu Studienphase
- Berechnung von Drug-Disease MRPs in Studienphasen "PhaseB" und "PhaseBTest" und Anzeige im Frontend
- Optimierungen der DB
- Anpassungen am Frontend
Hinweise
- ⚠️ Frontend/REDCap: Die Änderungen können manuell im bestehenden REDCap-Projekt durchgeführt werden, siehe die beiden mit Version "1.0.0" markierten Zeilen in der Changelog-Tabelle. Alternativ kann eine Migration des INTERPOLAR REDCap Projektes durchgeführt werden (REDCap Projekt und DataDictionary v1.0.0 im MII SharePoint).
- :warning: Migration von DB erforderlich
- :warning: Bitte Checkliste zur Aktivierung der MRP-Berechnung beachten.
- :warning: Das INTERPOLAR-WP7 Git-Repository mit den MRP-Listen muss manuell in die CDS-Toolchain eingebunden werden eingebunden werden, siehe Anleitung.
What's Changed
- 437 prepare scripts for mrp calculation by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/552
- 575 inhalt und metadaten von wp7 listen in db speichern by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/759
- Quit processes on error with return value 1 by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/764
- 765 fix changed redcap list values delimiter in csv export by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/766
- 177 berechnung drug disease mrps by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/769
- 575 inhalt und metadaten von wp7 listen in db speichern by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/771
- Enable adding columns per extension file in frontend DB tables by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/774
- 646 citationcff hinzufuegen by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/799
- 177 berechnung drug disease mrps by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/806
- 787 index verbessern und in migration integrieren by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/807
- 177 berechnung drug disease mrps by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/808
- 177 berechnung drug disease mrps by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/809
- 793 handlungsanweisung für test ip 1b by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/815
- Develop by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/816
- Release by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/817
- Fix brackets in sql query by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/823
- 836 anbindung wp7 ordner git submodule entfernen und docker composeyml anpassen by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/837
- Release by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/838
Full Changelog: https://github.com/medizininformatik-initiative/INTERPOLAR/compare/v0.2.11...v1.0.0
- PLpgSQL
Published by SebStaeubert 12 months ago
interpolar - v0.2.11
Allgemein
- Hotfixes
- CDS-Toolchain Performance erhöht.
- Unterteilung der DB2Frontend Aufrufe: erfolgt jetzt in 2 Schritten, damit im kompletten Durchlauf die aktuellen Daten aus dem Frontend berücksichtigt werden.
- Bugfixes
- Eine Datenbank-View kann ggf. Patienten mehrfach angezeigt haben (Verlegung zwischen IP-Stationen).
- Verhindern eines Abbruchs der Toolchain bei nicht KDS-konformen Encountern (wenn Startdatum fehlt).
- FHIR-Search-Timeout lässt sich zuverlässig auf mehr als 10 Minuten stellen.
Hinweise
- Es wurden keine Änderungen an den config-toml-Dateien vorgenommen.
- Die Datenbank muss migriert werden, siehe #749
What's Changed
- V0.2.10 hotfix by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/782
- Release by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/783
Full Changelog: https://github.com/medizininformatik-initiative/INTERPOLAR/compare/v0.2.10...v0.2.11
- PLpgSQL
Published by SebStaeubert about 1 year ago
interpolar - CDS tool chain v0.2.10
Allgemein
- Filterung nach Stationen (REDCap Data Access Groups - DAG), Beschreibung siehe R-cds2db/cds2db_config.toml
- DB:
- Migration Skripte entwickelt
- Logging von Änderungen an der DB-Struktur
- REDCap Anpassungen, siehe IP-Wiki
- Fall: Layout
- Fall: Benennung Felder bzgl. Größe und Gewicht korrigiert
- REDCap Migration, siehe Discussion #737
- Update R-Version
- Fehlerbehandlung verbessert
- Lizenz hinzugefügt (Apache-2.0)
- Performance-Optimierungen
- Bugfixes, u.a.
- Vorkommen von Patienten auf mehreren Stationen
- Fehler bei der Anzeige von Fall und Zimmernummer
- curl-Timeouts werden berücksichtigt
- abgebrochene DB-Verbindungen wiederherstellen
Hinweise
Nach der Installation sind die folgenden Schritte erforderlich: - DB-Migration, siehe Discussion #749 - REDCap-Migration, siehe Discussion #737
What's Changed
- 668 erkennen wenn patienten im frontend geändert aus fhir kommen by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/669
- Sql scriptgenerierung erweitern by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/671
- Create and Update Data Access Groups in Redcap by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/676
- Create LICENSE by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/675
- Update FrontendTableDescription and dictionary by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/677
- 661 typo in tabledescriptiondefinition medreq intend statt intent by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/678
- 666 fix fhir resource download by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/679
- 665 dokumentation änderung der datenbankstruktur by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/681
- Add deceasedDateTime in Table_Description and SQL scrips by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/682
- 670 fall fe tabelle je eine spalte für encid und encidentifier2 by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/683
- 644 retry bei fhir search abfragen by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/684
- 667 fhir metadatum update separat behandeln by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/689
- 644 retry bei fhir search abfragen by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/691
- Fix missing grant in SQL script for last import view by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/692
- Fix query for pidsperward_last by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/693
- 667 fhir metadatum update separat behandeln by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/694
- DB - Correct code typo Refs #667 by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/698
- Add parameter to download FHIR resources by subject= again by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/704
- 686 cds2db auslastung auf die vm by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/702
- 703 patienten ohne vornamen by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/709
- disable multiple encounter in pidsperward by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/710
- 711 fhir search min patient age can be null by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/713
- 703 patienten ohne vornamen2 by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/712
- 715 reactivate fhircrackr installation from cran in dockerfile r by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/716
- 714 fix filter for multiple encounters per patient by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/717
- Enable run cron job function from R code by DB toml parameter by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/719
- 720 fix git not found error in docker run by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/721
- 722 optimize database calls for observations by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/723
- 724 validate encounter subject references by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/725
- 462 data access groups im importskript berücksichtigen by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/726
- Retrieve git informations by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/728
- 729 update r version on docker1 by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/730
- 732 update redcap version and db scripts by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/733
- 674 zimmernummerbett in fall fe by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/735
- Develop by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/736
- 727 no patient ref found in pids per ward after check patients on multiple wards by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/738
- 685 umschreiben der sql createskripte so das diese auch als migrationsskripte verwendbar sind by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/742
- 743 reopen closed database connection by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/744
- Add missing new line in log message by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/747
- Develop -> Release 0.2.10 by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/748
- Release v0.2.10 by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/751
Full Changelog: https://github.com/medizininformatik-initiative/INTERPOLAR/compare/v0.2.9...v0.2.10
- PLpgSQL
Published by SebStaeubert about 1 year ago
interpolar - CDS tool chain v0.2.9
Allgemein
- Optimierungen DB + Verarbeitung (Performance)
- Aktualisierung REDCap Formulare (Stand 24.03.2025)
- Testdaten (dynamisch) und Tests
- Logging und Debugging Verbesserungen
- Aufruf aller CDS tool chain Module über ein Script (R-cdstoolchain/StartCDSToolChain.R)
Hinweise
- REDCap: Felder mit dynamischen SQL müssen manuell mit REDCap Admin-Rechten angepasst werden, siehe Q&A Eintrag #656
- REDCap: Dashboard Filter können fehlerhaft sein, siehe Q&A Eintrag #657
- DB2Frontend: Die Instrumenten "Risikofaktoren" und "Trigger" werden aktuell von der CDS tool chain ignoriert, d.h. Sie werden nicht angelegt und bereits angelegte nicht in die CDSHUBDB übernommen.
What's Changed
- Release by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/596
- 602 entlassene patienten als solche erkennen by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/604
- 499 optimierung des sql codes um die ausführungszeit zu verbessern by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/605
- 607 prepare release 029 by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/608
- Revert changes in getActiveEncounterPIDsFromDB query by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/610
- 607 prepare release 029 by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/611
- 607 prepare release 029 -> develop by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/632
- Fix DEBUG_DAY implementation by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/633
- Update docker-compose.yml by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/648
- 631 redcap items aus spalten in der frontend table description extrahieren by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/650
- 607 prepare release 029 by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/651
- Fix dbGetStatus() function by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/652
- Develop by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/658
- Release v0.2.9 by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/659
Full Changelog: https://github.com/medizininformatik-initiative/INTERPOLAR/compare/v0.2.8...v0.2.9
- PLpgSQL
Published by SebStaeubert about 1 year ago
interpolar - CDS tool chain v0.2.8
Allgemein
- Bug Fixes:
- Bett und Zimmer werden angezeigt, wenn vorhanden
- Typo in Spaltennamen gefixt
- Spalten für FHIR Metadata in CDS-DB hinzugefügt
- Fallnummern offener Fälle werden in dataprocessorout.vpidsperward Tabelle eingefügt
Hinweise
- Achtung: Es wurden Änderungen an der Datenbank vorgenommen (Spaltennamen korrigiert, FHIR Metadata). Sind noch keine Daten in der Datenbank bzw. Frontend, bitte redcap-DB und CDS-DB Volumes löschen. Anschließend auf dieses Release aktualisieren (git pull) und mit docker compose up --build starten. \ Befinden sich bereits Daten in der INTERPOLAR Datenbank (CDS-DB) und/oder im Frontend (REDCap), melden Sie sich bitte beim IP-IT Team.
What's Changed
- 449 meta information aller resourcen mit ausleiten by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/591
- 590 fix room and bed display by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/592
- Develop v0.2.8 by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/593
- Release v0.2.8 by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/594
Full Changelog: https://github.com/medizininformatik-initiative/INTERPOLAR/compare/v0.2.7...v0.2.8
- PLpgSQL
Published by SebStaeubert over 1 year ago
interpolar - CDS tool chain v0.2.7
Allgemein - Encounter-Filter gegen Überschneidungen auf mehreren Stationen abgesichert - Anzeige von Zimmer- und Bettnummer in RedCap - Dokumentation ergänzt - Bugfixes - Zeitzonenprobleme - Probleme beim Schreiben von Zeitangaben in die Datenbank
What's Changed
- 555 db2dataprocessor out views auf alle tabellen geben sowie zeitstempel anpassen by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/556
- 528 zeitzonenproblem bei patientengeburtstag in frontend2db by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/557
- 522 größe wird in einigen fällen nicht nach redcap übertragen by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/562
- 551 es werden nur daten von neuen patienten geladen by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/564
- 566 cds2db error bei medicationrequestdoseageinstructiontimingrepeattimeofday beim schreiben in datenbank by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/569
- develop -> release by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/570
- Validate pidsperward by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/571
- develop -> release by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/572
- 576 fix function test examples by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/577
- Develop -> Release by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/578
- 517 anzeige vom bett in redcap funktioniert nicht by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/579
- Add the term "module" to the description by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/580
- Develop by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/581
- Release v0.2.7 by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/582
Full Changelog: https://github.com/medizininformatik-initiative/INTERPOLAR/compare/v0.2.6...v0.2.7
- PLpgSQL
Published by Flow191 over 1 year ago
interpolar - CDS tool chain v0.2.6
Allgemein
- Logging verbessert
- Dokumentation ergänzt
- Bugfixes
What's Changed
- remove mcrypt from REDCap-app/Dockerfile, refs #515 by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/516
- Fix Encounter Location FHIR path by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/519
- Write patient identifier value in fall_fe by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/520
- 503 unify database scripts in all r modules by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/524
- Set timezone explicitly to Europe/Berlin by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/529
- 506 db statusanzeige erweitern des verarbeitungsprozesses by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/521
- Fix missing patient height and weight in frontend tables by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/533
- 506 db statusanzeige erweitern des verarbeitungsprozesses by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/530
- Update module Rproj files to new R-Studio file format by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/536
- Fix debug observation table extention by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/538
- Update sql generation for definition lists by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/539
- DB - Change the function to show the status of the semaphore - only s… by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/540
- Add full toolchain description by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/542
- Develop v0.2.5 -> v0.2.6 by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/543
- Release v0.2.5 -> v0.2.6 by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/544
Full Changelog: https://github.com/medizininformatik-initiative/INTERPOLAR/compare/v0.2.5...v0.2.6
- PLpgSQL
Published by Flow191 over 1 year ago
interpolar - CDS tool chain v0.2.5
CDS2DB: - Performance Optimierung des Imports und der Verarbeitung der FHIR Ressourcen - Überarbeitung der R-cds2db/cds2dbconfig.toml inkl. Einführung neuer und Entfernen von bisherigen Parameter - Achtung: Die bestehende R-cds2db/cds2dbconfig.toml kann nicht weiterverwendet werden! Bitte die in diesem Release zur Verfügung gestellten Datei anpassen und verwenden! Vgl. R-cds2db/cds2dbconfigexample.toml
DataProcessor: - verbesserte Filtermöglichkeiten für die Übertragung relevanter Fälle (Encounter) zum Frontend
CDSDB / DB-Jobs: - Implementierung Datensatzüberwachung (Datensatzzählung) und Report - Erweiterung der Datensatzmarkierung um zeitliche Zuordnung zu ermöglichen (Last Processing Number) - Semaphore zur Steuerung der DB-internen Funktionen zur Sicherstellung der Datenkonsistenz - Einführung detailierte Fehlererkennung und Dokumentation - Optimierung der Code-Ausführung der Überführungsfunktion - Einführung von Parametern zur standortbezogenen Konfiguration - Verwendung von pgbackground zur parallelen Ausführung von DB-Funktionen - Referenzen in den Spalten-Namen der IP-DB wurden umbenannt von _id zu _ref
Allgemein - Logging verbessert - Dokumentation ergänzt - Bugfixes
What's Changed
- 432 add debug tests for toml parameters for cds2db by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/433
- Update cds2db config toml by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/435
- 431 restructure scrips in modul db2frontend by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/436
- Improve logging for Debug Test Errors by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/439
- Fix syntax error in cds2db toml and example toml by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/440
- Expand logging informations in case of empty lastprocessingnr by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/446
- Fix wrong timezone on backlog filenames by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/452
- 454 fhir search debug parameter erweitern by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/458
- 457 add relevant changesfrom v030 develop in develop by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/464
- 441 melting dauert zu lange by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/465
- Add filter for Frontend displayed Encounter class in dataprocessor by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/469
- added pg_background install to cds-hub postgres DB, refs #474 by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/475
- 404 fhir endpunkt curl parameter debug doku zertifikate mounten by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/477
- Configure Renovate by @renovate in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/470
- 453 referenzen in den spalten namen der ip db nicht mehr id sondern ref nennen by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/489
- 479 correct sql query for getting pids from v encounter by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/490
- 484 fix db error handling by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/491
- Fix error for Encounter Class Code FHIR Path in TableDescription by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/496
- 494 semaphore um modulname erweitern by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/502
- Update example toml data by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/505
- 508 parameter bei fehlender partof referenz einfügen by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/509
- Develop->Release v0.2.5 by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/510
- Release->Main v0.2.5 by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/511
New Contributors
- @renovate made their first contribution in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/470
Full Changelog: https://github.com/medizininformatik-initiative/INTERPOLAR/compare/v0.2.4...v0.2.5
- PLpgSQL
Published by SebStaeubert over 1 year ago
interpolar - CDS tool chain v0.2.4
Zusammenfassung
- Frontend: finalen Stand IP-1a implementiert
- Verbessertes Debugging
- Verbessertes Logging
- Docker / Docker-Compose optimiert
- Bugfixes
What's Changed
- Release by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/376
- 375 doku um hinweise twendt ergänzen bzw hinweise umsetzen by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/377
- Add descriptive header to generated SQL files by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/381
- Updating the frontend tables to the current status of the redcap project by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/384
- add necessary redcap columns also for non-repeating instruments - mus… by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/386
- 390 bereinigung globaler variablen by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/391
- Fix wrong DB tables names if no resources loaded from FHIR server by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/393
- 394 erweiterung der config toml debugparmeter by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/398
- Fix upper/lower case and add table description seperator by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/399
- 400 fix debug config toml comments by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/401
- Expand parameter logging functionality by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/407
- Fix redcaprepeatinstrument contains instrument name and not label by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/411
- 408 finale frontend struktur vom 04092024 umsetzen by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/412
- DB fix bug at default values current timestamp data hist by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/415
- Optimization of the timestamp in all tables by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/417
- Add current on current_timestamp by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/418
- Fix error if debug start and end date are set in cds2db.toml by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/422
- 419 debug filter in cds2dbtoml erzeugen nur warnung wenn indizes nicht zur ergebnismenge passen by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/420
- Authorization to access the sequence is passed directly when the func… by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/424
- 403 r env debug tools einfügen by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/425
- Develop by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/426
- Release by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/427
Full Changelog: https://github.com/medizininformatik-initiative/INTERPOLAR/compare/v0.2.3...v0.2.4
- PLpgSQL
Published by SebStaeubert over 1 year ago
interpolar - CDS tool chain v0.2.3
Zusammenfassung
- Aktualisierung R-Umgebung, REDCap
- Anpassungen WP7 -> Frontend (REDCap)
- Aktualisierung / Synchronisierung FHIR-Daten / Frontend
- Bug fixes.
- Doku aktualisiert
What's Changed
- Update Dockerfile_R by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/325
- 290 checkerror wrong arguments for subsetting an environment by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/327
- Add reference to Dataflow.md in README.md by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/328
- 331 aus den fhir daten den kis pid statt die fhir id im frontend anzeigen im dp und db hinzufügen by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/333
- Update docker-compose.yml by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/338
- 326 fhir id in redcap by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/340
- Fill column redcaprepeatinstrument and redcaprepeatinstance by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/341
- 200 code umstrukturieren by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/342
- 334 error beim ausführen des befehls docker compose run rm no deps r env rscript r db2frontendstartdb2frontendr by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/343
- 339 daten aller patienten mit nicht abgeschlossenen faellen immer laden by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/347
- 355 unify r code in module db2frontend by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/356
- 352 filter auf encounter daten umstellen by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/358
- Update Readme.md by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/357
- 362 install anleitung schritt redcap token einfügen by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/363
- 335 datenbankscripte für geänderte takeover funktonen generieren by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/364
- 365 fix commit in cron job block by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/366
- Remove fill redcaprepeat columns in patientfe from dataprpcessor by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/368
- Extend the waiting time for cron jobs by 10 seconds by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/371
- 372 set error to warning if pids per ward table is empty for dataprocessor by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/373
- Release by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/374
Full Changelog: https://github.com/medizininformatik-initiative/INTERPOLAR/compare/v0.2.2...v0.2.3
- PLpgSQL
Published by SebStaeubert almost 2 years ago
interpolar - CDS tool chain (v0.2.2)
Changes: - Bug fixes - improved documentation - changed timezone for REDCap PHP-Environment - removed env-file for REDCap-db -> moved env-Vars in docker-compose.yml
Known bugs: - unwanted birthdate changes in db2frontend, refs #318 - error executing redcaprepeatinstance and redcaprepeatinstrument #308 (dataprocessor)
What's Changed
- 247 dokumentation von modul cds2db und dataprocessor by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/301
- 211 dokumentation db tabellen schemata by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/303
- DB fix of the frontend tables for reimporting the frontend data in or… by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/305
- 302 datenflussbeschreibung verlinken und workflow nummern architektur grafik verwenden by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/310
- 306 modul erfolgreich durchgelaufen meldung am ende ausgeben by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/311
- 222 empfehlung für dimensionierung anforderungen der vmcontainer cpu ram storage erstellen by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/316
- Fix MRP table with adaptation to changed frontend by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/315
- 318 frontend verändert gebutrstadatum by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/319
- Release by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/320
Full Changelog: https://github.com/medizininformatik-initiative/INTERPOLAR/compare/v0.2.1...v0.2.2
- PLpgSQL
Published by SebStaeubert about 2 years ago
interpolar - KDS Pipeline (v0.2.1)
Fehlerkorrektur.
What's Changed
- 294 fix logging by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/295
- Release by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/296
Full Changelog: https://github.com/medizininformatik-initiative/INTERPOLAR/compare/v0.2.0...v0.2.1
- PLpgSQL
Published by SebStaeubert about 2 years ago
interpolar - CDS tool chain ("IP 1-a", v0.2.0)
Fokus: Start von IP-1a (01.07.2024)
- Die für 1-a benötigten KDS Daten werden in die DB geschrieben (cds2db, cds_hub)
- Tabelle mit typisierten FHIR Daten erstellen https://github.com/medizininformatik-initiative/INTERPOLAR/issues/199, https://github.com/medizininformatik-initiative/INTERPOLAR/issues/206, https://github.com/medizininformatik-initiative/INTERPOLAR/issues/207 [done] und befüllen https://github.com/medizininformatik-initiative/INTERPOLAR/issues/173, https://github.com/medizininformatik-initiative/INTERPOLAR/issues/201
- DataProcessor: typisierte Daten in Frontend-Tabelle transformieren und übertragen
- Tabelle für db2frontend https://github.com/medizininformatik-initiative/INTERPOLAR/issues/180
- Frontend: Formulare für 1-a entwerfen (inkl. Data Dictionary) https://github.com/medizininformatik-initiative/INTERPOLAR/issues/217
- Anschließend werden sie von dort in die Formulare im Frontend übertragen (db2frontend) https://github.com/medizininformatik-initiative/INTERPOLAR/issues/180
- Rückmeldungen aus den Formularen können in der DB gespeichert werden https://github.com/medizininformatik-initiative/INTERPOLAR/issues/214
- Tests (Pre-Release)
- Dokumentation
- DB-Tabellen / Schemata https://github.com/medizininformatik-initiative/INTERPOLAR/issues/211
- Installationsanleitung https://github.com/medizininformatik-initiative/INTERPOLAR/issues/212
- Ressourcen-Anforderungen https://github.com/medizininformatik-initiative/INTERPOLAR/issues/222
Siehe Milestone Release v0.2.0
What's Changed
- Documentation by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/146
- Restructure scripts for text colorization by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/151
- 152 logging fehler beheben by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/156
- substitute ${PWD} with ".", refs #158 by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/160
- 159 konvertierung der datumsangaben by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/164
- 165 string längen überprüfen vor eintrag in der db by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/166
- 150 anlegen von ordner und skripten vom dataprocessor by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/170
- 171 fix patientenunabhängigen resourcendownload by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/175
- U Rename some functions by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/176
- Rename sample resource functions by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/178
- U rename functions and restructure R files by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/179
- 182 hotfixes by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/183
- 177 berechnung drug disease mrps by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/184
- Update from Release by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/190
- 185 verbesserung des loggings von requests und fehlerbehebung in log datei by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/191
- 154 modellierung it architektur by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/192
- Documentation by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/193
- 189 umbenennung kds cds by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/195
- DB - check skripts by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/197
- 199 datenbank sql scripte automatisch generieren by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/205
- 155 pgadmin konfiguration aus den umgebungsvariablen docker compose env erzeugen by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/208
- 204 docker compose version entfernen by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/209
- 157 dockerredcap verschiedene redcap downloads bzw versionen testen und ggf bugfix by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/210
- 199 datenbank sql scripte automatisch generieren by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/215
- Add missing variable in DB generating R script by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/216
- 207 fix raw tabellen in die datenbank schreiben by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/218
- Fix Database credentials for dataprocessor by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/220
- 221 typisierte Tabellen fuer Dataprocessor bereitstellen by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/223
- 224 aktualisierung der tabellen des frontends by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/225
- Fix wron comments in DB script 46 by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/226
- Customized tables for frontend and direct access for frontend to FHIR… by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/228
- 229 fix missing raw ids in database log tables by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/231
- 230 fix functions for convert column types by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/232
- 229 fix missing raw ids in database log tables by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/234
- DB 1. Frontend data structures updated (40) and updated in the login are… by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/235
- pgadmin auf neues image und neuste Version aktualisiert. refs #236 by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/237
- 180 anzuzeigene daten für das frontend version 1a erzeugen by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/238
- 200 code umstrukturieren by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/239
- 229 fix missing raw ids in database log tables by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/241
- Ip 1a db2 red cap by @mayadogh in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/242
- Remove unused files in version 0.2.0 by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/244
- Remove unused functions in 0.2.0 by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/248
- Data source for frontend switched from temporary solution to DB core.… by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/252
- R-dataprocessor hinzugefügt, refs #250 by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/253
- 247 dokumentation von modul cds2db und dataprocessor by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/254
- Fix DEBUGCURRENTDATETIME in dataprocessor by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/255
- Umgebungsvar TZ gesetzt. refs #256 by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/258
- 257 fix encounter frontend table by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/259
- Added 'recordid','redcaprepeatinstrument','redcaprepeat_instance' by @mayadogh in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/262
- 261 datenbankverbindungen wieder schließen by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/263
- 251 fix dataviews for frontend by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/264
- 251 fix dataviews for frontend by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/265
- 267 fuellen der neu dazugekommenen id spalten fuer patient fe und fall fe by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/269
- Split SQL R-Code to get data for each REDCap form separately. by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/272
- 251 fix dataviews for frontend by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/275
- 274 bogenstatus setzen by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/277
- 276 dbdp mitfuehren der getypten daten id im dataprocessor by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/278
- Documentation by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/280
- 279 vereinfachen der view zum melten by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/281
- DB Testdatasets by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/282
- Release 0.2.0 by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/283
Full Changelog: https://github.com/medizininformatik-initiative/INTERPOLAR/compare/v0.1.0-alpha...v0.2.0
- PLpgSQL
Published by SebStaeubert about 2 years ago
interpolar - CDS tool chain (GMDS 2024)
This release represents the state of development at the time of submission of the conference paper to GMDS 2024.
What's Changed
- Documentation by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/146
- Restructure scripts for text colorization by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/151
- 152 logging fehler beheben by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/156
- substitute ${PWD} with ".", refs #158 by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/160
- 159 konvertierung der datumsangaben by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/164
- 165 string längen überprüfen vor eintrag in der db by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/166
- 150 anlegen von ordner und skripten vom dataprocessor by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/170
- 171 fix patientenunabhängigen resourcendownload by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/175
- U Rename some functions by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/176
- Rename sample resource functions by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/178
- U rename functions and restructure R files by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/179
- 182 hotfixes by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/183
- 177 berechnung drug disease mrps by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/184
- Update from Release by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/190
- 185 verbesserung des loggings von requests und fehlerbehebung in log datei by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/191
- 154 modellierung it architektur by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/192
- Documentation by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/193
- 189 umbenennung kds cds by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/195
- DB - check skripts by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/197
Full Changelog: https://github.com/medizininformatik-initiative/INTERPOLAR/compare/v0.1.0-alpha...v0.1.0-gmds
- PLpgSQL
Published by SebStaeubert about 2 years ago
interpolar - AMTS-Cockpit
- Entwicklungsumgebung verfügbar
- Zugriffe für die Entwickler eingerichtet (VPN, Public-Keys, etc.)
- Docker-Umgebung Entwickler-VM einreichtet
- initiales docker-compose Setup erstellt ((opt: FHIR-Server), R-Umgebung, AMTS-Datenbank, Redcap+DB)
- Zugriff auf FHIR-Server mit Testdaten (MII FHIR Server mit Testdaten)
- R-kds2db Projekt inkl. Dokumentation aufgesetzt (roxygen)
- ETL (Stage 0 (temp.), Stage 1 (pers.), Rohdaten): FHIR-Ressourcen werden in tabellarische Daten konvertiert und in der AMTS-DB abgelegt #53
- Redcap: IP-Projekt aufgesetzt und exportiert
- Aufbereitung/Harmonisierung (Stage 2 (in Rel. 0.1.0: SQL; später Scripte/R), 'für IP nutzbare Daten') #55
- Redcap: Stage-2 Daten in Redcap-Formularen anzeigbar (Nachweis der technischen Machbarkeit), R-db2frontend #54
- Doku #58
- Markdown-Dateien
- github-Pages aktiviert
- Tests / QS
- docker-compose
- R-Scripte
- DB
What's Changed
- 46 fhir2sql initiale r projektstruktur anlegen by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/49
- 50 add retrieval functions from template by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/56
New Contributors
- @astruebi made their first contribution in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/49
Full Changelog: https://github.com/medizininformatik-initiative/INTERPOLAR/commits/v0.1.0-alpha
What's Changed
- 46 fhir2sql initiale r projektstruktur anlegen by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/49
- 50 add retrieval functions from template by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/56
- 53 fhir2sql überführung der ressourcentabellen in ip datenbank by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/62
- 63 release vorbereitung für fhir2db by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/65
- 64 kds2db datenbankzugriffsdaten für alle module in eine separate db configtoml verschieben by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/66
- 69 db benennung initialer commit by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/70
- Rename mrputils -> etlutils by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/72
- 73 initiale einrichtung docker auf der vm by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/74
- 79 finale anpassungen für release v01 im modul kds2db by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/80
- 77 finalisierende arbeiten docker compose setup by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/78
- 29 skript zum daten in redcap schicken by @mayadogh in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/82
- 81 initiale db skripte hinzufügen by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/83
- 85 kds2db definition der table description erleichtern by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/87
- 88 kds2db update table description by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/89
- 92 kds2db fehlerbehebung beim logging und in der table description by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/95
- Release by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/96
- 84 redcap deploy variante 1 ip redcap from redcap plain download by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/97
- Change build of R environment from multiple Dockerfiles to a single D… by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/99
- Release by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/100
- kds2db korrektes arbeitsverzeichnis setzen by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/104
- 105 kds2db pfade für toml dateien korrigieren by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/106
- 84 redcap deploy variante 1 ip redcap from redcap plain download by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/107
- Release by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/108
- 106 db2frontend pfade für toml dateien korrigieren by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/110
- DB update init script with new tables by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/111
- U Fix missing URLPORTSPEC variable by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/113
- DB fix script by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/115
- 112 ksd2db verbesserung des loggings by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/116
- DB change itemnames by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/117
- DB change call to select by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/118
- DB bigger medcodesystem varchar by @reuschem in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/119
- P Create initial DataProcessor project by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/122
- Create README.md by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/123
- 120 redcap api token und url in db2frontend configtoml by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/125
- Release by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/127
- 124 kds2db update table description by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/128
- 126 kds2db kleine anpassungen für release v01 by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/129
- 130 add pids per ward in table description by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/131
- 132 kds2db automatische generierung des initialen sql skriptes by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/133
- 84 redcap deploy variante 1 ip redcap from redcap plain download by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/134
- 135 kds2db letzte fehlerbehebungen vor release v01 by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/136
- K + DB Move template SQL Scripts to subfolder 'template' by @astruebi in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/139
- 141 hotfix fuer release v01 by @Flow191 in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/142
- Release v0.1 by @SebStaeubert in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/144
New Contributors
- @Flow191 made their first contribution in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/65
- @SebStaeubert made their first contribution in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/70
- @mayadogh made their first contribution in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/82
- @reuschem made their first contribution in https://github.com/medizininformatik-initiative/INTERPOLAR/pull/83
Full Changelog: https://github.com/medizininformatik-initiative/INTERPOLAR/commits/v0.1.0-alpha
- PLpgSQL
Published by SebStaeubert over 2 years ago