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Recent Releases of brainrender

brainrender - v2.1.17

What's Changed

  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainrender/pull/401
  • Unpin vtk by @IgorTatarnikov in https://github.com/brainglobe/brainrender/pull/402
  • Replaced NIU upload action with separate steps by @IgorTatarnikov in https://github.com/brainglobe/brainrender/pull/405
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainrender/pull/406
  • update tests and pyproject to latest vedo by @alessandrofelder in https://github.com/brainglobe/brainrender/pull/407
  • Use pypa/gh-action-pypi-publish stable release v1 by @lochhh in https://github.com/brainglobe/brainrender/pull/408
  • Update Python versions to adhere to SPEC 0 and remove Intel testing on macOS by @adamltyson in https://github.com/brainglobe/brainrender/pull/411

New Contributors

  • @lochhh made their first contribution in https://github.com/brainglobe/brainrender/pull/408

Full Changelog: https://github.com/brainglobe/brainrender/compare/v2.1.16...v2.1.17

- Python
Published by adamltyson 10 months ago

brainrender - v2.1.16

What's Changed

  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainrender/pull/393
  • Notify slack on scheduled test failure by @IgorTatarnikov in https://github.com/brainglobe/brainrender/pull/394
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainrender/pull/398
  • Pin vtk by @IgorTatarnikov in https://github.com/brainglobe/brainrender/pull/397
  • Expose check_latest in the atlas constructor by @IgorTatarnikov in https://github.com/brainglobe/brainrender/pull/396
  • Expose check latest in Scene constructor by @IgorTatarnikov in https://github.com/brainglobe/brainrender/pull/400

Full Changelog: https://github.com/brainglobe/brainrender/compare/v2.1.15...v2.1.16

- Python
Published by IgorTatarnikov about 1 year ago

brainrender - v2.1.15

What's Changed

  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainrender/pull/388
  • Exposed the invert_dim parameter by @IgorTatarnikov in https://github.com/brainglobe/brainrender/pull/391
  • Add function to mirror the mesh of an actor by @IgorTatarnikov in https://github.com/brainglobe/brainrender/pull/392

Full Changelog: https://github.com/brainglobe/brainrender/compare/v2.1.14...v2.1.15

- Python
Published by IgorTatarnikov about 1 year ago

brainrender - v2.1.14

What's Changed

  • Schedule weekly tests by @IgorTatarnikov in https://github.com/brainglobe/brainrender/pull/387
  • Expose resetcam parameter by @IgorTatarnikov in https://github.com/brainglobe/brainrender/pull/386

Full Changelog: https://github.com/brainglobe/brainrender/compare/v2.1.13...v2.1.14

- Python
Published by IgorTatarnikov over 1 year ago

brainrender - v2.1.13

What's Changed

  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainrender/pull/380
  • Add a new example visualising brainmapper cells in specific brain regions. by @adamltyson in https://github.com/brainglobe/brainrender/pull/382
  • Add example showing plotting brain regions in a single hemisphere by @adamltyson in https://github.com/brainglobe/brainrender/pull/383
  • remove imio from dependencies by @alessandrofelder in https://github.com/brainglobe/brainrender/pull/385

Full Changelog: https://github.com/brainglobe/brainrender/compare/v2.1.12...v2.1.13

- Python
Published by alessandrofelder over 1 year ago

brainrender - v2.1.12

What's Changed

  • Added an example to dynamically alter the scene in each frame by @IgorTatarnikov in https://github.com/brainglobe/brainrender/pull/376

Full Changelog: https://github.com/brainglobe/brainrender/compare/v2.1.11...v2.1.12

- Python
Published by IgorTatarnikov over 1 year ago

brainrender - v2.1.11

What's Changed

  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainrender/pull/370
  • Standardise contact information in readme by @adamltyson in https://github.com/brainglobe/brainrender/pull/371
  • Remove duplicated help information by @adamltyson in https://github.com/brainglobe/brainrender/pull/372
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainrender/pull/373
  • Update hemisphere slicing by @IgorTatarnikov in https://github.com/brainglobe/brainrender/pull/375

Full Changelog: https://github.com/brainglobe/brainrender/compare/v2.1.10...v2.1.11

- Python
Published by adamltyson over 1 year ago

brainrender - v2.1.10

What's Changed

  • Move resources to top level by @adamltyson in https://github.com/brainglobe/brainrender/pull/345
  • Remove the markers to disable specific slowly running tests by @adamltyson in https://github.com/brainglobe/brainrender/pull/348
  • Update caching by @adamltyson in https://github.com/brainglobe/brainrender/pull/356
  • Add screenshot tests by @adamltyson in https://github.com/brainglobe/brainrender/pull/351
  • Add brainmapper example script by @adamltyson in https://github.com/brainglobe/brainrender/pull/359
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainrender/pull/362
  • Fix camera position setting by @IgorTatarnikov in https://github.com/brainglobe/brainrender/pull/364
  • Remove unused camera printing code and make camera parameters consistent by @adamltyson in https://github.com/brainglobe/brainrender/pull/365
  • Allow examples/neurons.py to run successfully when neuromorpho is down by @IgorTatarnikov in https://github.com/brainglobe/brainrender/pull/366
  • Mark tests that are expected to fail with xfail rather than just not running them by @adamltyson in https://github.com/brainglobe/brainrender/pull/367
  • Update supported Python versions by @adamltyson in https://github.com/brainglobe/brainrender/pull/363
  • add kwargs params to Render.screenshot() and Render.export() by @carlocastoldi in https://github.com/brainglobe/brainrender/pull/368
  • Enforce latest vedo version by @adamltyson in https://github.com/brainglobe/brainrender/pull/369

Full Changelog: https://github.com/brainglobe/brainrender/compare/v2.1.9...v2.1.10

- Python
Published by adamltyson over 1 year ago

brainrender - v2.1.9

What's Changed

  • CI for both Mac architectures by @alessandrofelder in https://github.com/brainglobe/brainrender/pull/342
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainrender/pull/343
  • Fix formatting issue with name by @adamltyson in https://github.com/brainglobe/brainrender/pull/344
  • Change default shader style to plastic by @adamltyson in https://github.com/brainglobe/brainrender/pull/350
  • Save all data to .brainglobe/brainrender by @adamltyson in https://github.com/brainglobe/brainrender/pull/349
  • Fix jagged renderings in cartoon mode and restore default shader style by @adamltyson in https://github.com/brainglobe/brainrender/pull/352
  • Update from imio to brainglobe_utils.IO.image by @adamltyson in https://github.com/brainglobe/brainrender/pull/346

Full Changelog: https://github.com/brainglobe/brainrender/compare/v2.1.8...v2.1.9

- Python
Published by alessandrofelder over 1 year ago

brainrender - v2.1.8

What's Changed

  • add codecov token by @K-Meech in https://github.com/brainglobe/brainrender/pull/336
  • Readme Overhaul by @paulbrodersen in https://github.com/brainglobe/brainrender/pull/337
  • Added support for multiple screenshot file formats by @IgorTatarnikov in https://github.com/brainglobe/brainrender/pull/341

New Contributors

  • @K-Meech made their first contribution in https://github.com/brainglobe/brainrender/pull/336

Full Changelog: https://github.com/brainglobe/brainrender/compare/v2.1.7...v2.1.8

- Python
Published by adamltyson over 1 year ago

brainrender - v2.1.7

New line actor, thanks to @paulbrodersen!

See the example for details.

What's Changed

  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainrender/pull/333
  • Add line actor by @paulbrodersen in https://github.com/brainglobe/brainrender/pull/334

Full Changelog: https://github.com/brainglobe/brainrender/compare/v2.1.6...v2.1.7

- Python
Published by adamltyson over 1 year ago

brainrender - v2.1.6

brainglobe-atlasapi replaces bg-atlasapi

bg-atlasapi has been renamed, and thus we now depend on the new brainglobe-atlasapi package.

Other minor developer tool updates are included in this update.

What's Changed

  • User-specified colormap in PointsDensity by @GuillaumeLeGoc in https://github.com/brainglobe/brainrender/pull/325
  • Use the updated upload_pypi action by @IgorTatarnikov in https://github.com/brainglobe/brainrender/pull/326
  • Add check manifest to ci by @willGraham01 in https://github.com/brainglobe/brainrender/pull/329
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainrender/pull/328
  • Create CITATION.cff by @willGraham01 in https://github.com/brainglobe/brainrender/pull/324
  • update to latest vedo release by @alessandrofelder in https://github.com/brainglobe/brainrender/pull/331
  • bg-atlasapi to brainglobe-atlasapi by @willGraham01 in https://github.com/brainglobe/brainrender/pull/332

New Contributors

  • @GuillaumeLeGoc made their first contribution in https://github.com/brainglobe/brainrender/pull/325

Full Changelog: https://github.com/brainglobe/brainrender/compare/v2.1.5...v2.1.6

- Python
Published by willGraham01 almost 2 years ago

brainrender - v2.1.5

Bump to brainglobe-space dependency

Bumps the bg-space dependency to its replacement: brainglobe-space.

What's Changed

  • Add simple web export example by @adamltyson in https://github.com/brainglobe/brainrender/pull/319
  • Add explicit brainglobe-space dependency by @willGraham01 in https://github.com/brainglobe/brainrender/pull/320

New Contributors

  • @willGraham01 made their first contribution in https://github.com/brainglobe/brainrender/pull/320

Full Changelog: https://github.com/brainglobe/brainrender/compare/v2.1.4...v2.1.5

- Python
Published by willGraham01 almost 2 years ago

brainrender - v2.1.4

What's Changed

  • Remove GUI by @adamltyson in https://github.com/brainglobe/brainrender/pull/307
  • Save animation example to cwd by @adamltyson in https://github.com/brainglobe/brainrender/pull/308
  • Update message warning about lack of allensdk by @adamltyson in https://github.com/brainglobe/brainrender/pull/309
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainrender/pull/310
  • Update example notebook by @adamltyson in https://github.com/brainglobe/brainrender/pull/311
  • Update notebook example by @adamltyson in https://github.com/brainglobe/brainrender/pull/312
  • example to show probe tracks by @jingjie-li in https://github.com/brainglobe/brainrender/pull/313
  • Update readme images to use full URL by @adamltyson in https://github.com/brainglobe/brainrender/pull/317
  • Fix rotation bug when exproting to html by @IgorTatarnikov in https://github.com/brainglobe/brainrender/pull/318

New Contributors

  • @jingjie-li made their first contribution in https://github.com/brainglobe/brainrender/pull/313

Full Changelog: https://github.com/brainglobe/brainrender/compare/v2.1.3...v2.1.4

- Python
Published by adamltyson almost 2 years ago

brainrender - v2.1.3

What's Changed

  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainrender/pull/300
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainrender/pull/303
  • Update pre-commit monthly by @adamltyson in https://github.com/brainglobe/brainrender/pull/301
  • fix some vedo function calls still using lowerCamelCase instead of snake_case by @carlocastoldi in https://github.com/brainglobe/brainrender/pull/304
  • Simplify repo structure by @adamltyson in https://github.com/brainglobe/brainrender/pull/306

Full Changelog: https://github.com/brainglobe/brainrender/compare/v2.1.2...v2.1.3

- Python
Published by adamltyson about 2 years ago

brainrender - v2.1.2

What's Changed

  • Unpinned h5py version by @IgorTatarnikov in https://github.com/brainglobe/brainrender/pull/299

Full Changelog: https://github.com/brainglobe/brainrender/compare/v2.1.1...v2.1.2

- Python
Published by IgorTatarnikov about 2 years ago

brainrender - v2.1.1

What's Changed

  • various (small) improvements by @marcomusy in https://github.com/brainglobe/brainrender/pull/291
  • Fixed bug related to issue #293, amended tests to check in the future by @IgorTatarnikov in https://github.com/brainglobe/brainrender/pull/296
  • Update test badge by @alessandrofelder in https://github.com/brainglobe/brainrender/pull/298
  • deep copy the volume transform by @alessandrofelder in https://github.com/brainglobe/brainrender/pull/297

Full Changelog: https://github.com/brainglobe/brainrender/compare/v2.1.0...v2.1.1

- Python
Published by IgorTatarnikov about 2 years ago

brainrender - v2.1.0

What's Changed

  • Revisions by @FedeClaudi in https://github.com/brainglobe/brainrender/pull/147
  • Revisions by @FedeClaudi in https://github.com/brainglobe/brainrender/pull/148
  • Update getting_started.ipynb by @seblammers in https://github.com/brainglobe/brainrender/pull/163
  • Dev2 by @FedeClaudi in https://github.com/brainglobe/brainrender/pull/167
  • fix label and label's dot position by @RobertoDF in https://github.com/brainglobe/brainrender/pull/177
  • bug fix remove region in gui by @RobertoDF in https://github.com/brainglobe/brainrender/pull/184
  • fix for pointdensity by @FedeClaudi in https://github.com/brainglobe/brainrender/pull/182
  • Hetamap visualization by @FedeClaudi in https://github.com/brainglobe/brainrender/pull/186
  • Solve transparency bug in linux by @RobertoDF in https://github.com/brainglobe/brainrender/pull/185
  • Docstring changes and some suggestions by @seankmartin in https://github.com/brainglobe/brainrender/pull/191
  • Points density by @FedeClaudi in https://github.com/brainglobe/brainrender/pull/194
  • Vtk9 by @FedeClaudi in https://github.com/brainglobe/brainrender/pull/195
  • Add invert param to slice method of Scene by @RobertoDF in https://github.com/brainglobe/brainrender/pull/201
  • invert parameter missing by @RobertoDF in https://github.com/brainglobe/brainrender/pull/211
  • Add link to contributing guide by @adamltyson in https://github.com/brainglobe/brainrender/pull/212
  • Changed 'lexer_name' param to 'lexer' for rich update by @rcpeene in https://github.com/brainglobe/brainrender/pull/223
  • Update links in readme by @adamltyson in https://github.com/brainglobe/brainrender/pull/232
  • fix: retrieving meshes for a region present in the onthology but absent in the annotation atlas by @carlocastoldi in https://github.com/brainglobe/brainrender/pull/246
  • Add notice about lack of support by @adamltyson in https://github.com/brainglobe/brainrender/pull/248
  • minor installation/test running fixing by @alessandrofelder in https://github.com/brainglobe/brainrender/pull/254
  • pass DISPLAY env var to tox by @alessandrofelder in https://github.com/brainglobe/brainrender/pull/260
  • Potential fix for testrulerfrom_surface, removed transformation by @IgorTatarnikov in https://github.com/brainglobe/brainrender/pull/262
  • Fix windows install by @alessandrofelder in https://github.com/brainglobe/brainrender/pull/263
  • Install HDF5 for mac CI by @alessandrofelder in https://github.com/brainglobe/brainrender/pull/265
  • Standardise issue templates by @adamltyson in https://github.com/brainglobe/brainrender/pull/267
  • use pyvista action for headless display in tox by @alessandrofelder in https://github.com/brainglobe/brainrender/pull/273
  • Fix test_export_html and run it on CI by @alessandrofelder in https://github.com/brainglobe/brainrender/pull/275
  • Compatibility with vedo 2023.5.0 by @IgorTatarnikov in https://github.com/brainglobe/brainrender/pull/277
  • Fix video test by @alessandrofelder in https://github.com/brainglobe/brainrender/pull/276
  • All examples rendering correctly with vedo 2023.5.0 by @IgorTatarnikov in https://github.com/brainglobe/brainrender/pull/281
  • Remove setting of user-dependent FXAA vedo setting by @alessandrofelder in https://github.com/brainglobe/brainrender/pull/283
  • Tiny improvement to contributing guide by @alessandrofelder in https://github.com/brainglobe/brainrender/pull/284
  • Switch PySide2 for PyQt5 by @IgorTatarnikov in https://github.com/brainglobe/brainrender/pull/287
  • Mega fix of brainrender by @alessandrofelder in https://github.com/brainglobe/brainrender/pull/250

New Contributors

  • @seblammers made their first contribution in https://github.com/brainglobe/brainrender/pull/163
  • @RobertoDF made their first contribution in https://github.com/brainglobe/brainrender/pull/177
  • @seankmartin made their first contribution in https://github.com/brainglobe/brainrender/pull/191
  • @rcpeene made their first contribution in https://github.com/brainglobe/brainrender/pull/223
  • @carlocastoldi made their first contribution in https://github.com/brainglobe/brainrender/pull/246
  • @alessandrofelder made their first contribution in https://github.com/brainglobe/brainrender/pull/254
  • @IgorTatarnikov made their first contribution in https://github.com/brainglobe/brainrender/pull/262

Full Changelog: https://github.com/brainglobe/brainrender/compare/v2.0.0.0...v2.1.0

- Python
Published by alessandrofelder about 2 years ago

brainrender - v2.0.0.0

Major changes, check the docs for details: https://docs.brainrender.info/usage/overview/v1-greater-than-v2

- Python
Published by FedeClaudi about 5 years ago

brainrender - v1.1.0.0

New: - added a new Actor class which makes it easier to manage how Render transforms actors at render time. Actor also create's labels and can be printed to get more details about a specific mehs - exposed scale for screenshots (thanks @vigji )

Bug fixes: - multiple calls to render now transform neurons correctly - scene.add_brain_regions now returns colored brain regions when only an hemisphere's mesh is requested

- Python
Published by FedeClaudi about 5 years ago

brainrender - Released v1.0.1.0

change log - Fish neurons API - compatible with python 3.7 - allensdk optional - new axes look - fixed axes origin

small stuff - improved camera stuff - new scene special attributes - scene.list_actors

- Python
Published by FedeClaudi about 5 years ago