snpr

The sources of the openSNP website

https://github.com/opensnp/snpr

Science Score: 41.0%

This score indicates how likely this project is to be science-related based on various indicators:

✓
CITATION.cff file
Found CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
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.zenodo.json file
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DOI references
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Academic publication links
✓
Committers with academic emails
1 of 22 committers (4.5%) from academic institutions
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Institutional organization owner
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (10.5%) to scientific vocabulary

Keywords

bioinformatics open-science opensnp rails

Scientific Fields

Computer Science Computer Science - 84% confidence

Last synced: 6 months ago · JSON representation ·

Repository

The sources of the openSNP website

Basic Info

Host: GitHub
Owner: openSNP
License: mit
Language: HTML
Default Branch: master
Homepage: http://opensnp.org
Size: 21.8 MB

Statistics

Stars: 177
Watchers: 20
Forks: 56
Open Issues: 33
Releases: 0

Topics

bioinformatics open-science opensnp rails

Created over 14 years ago · Last pushed 11 months ago

Metadata Files

Readme Contributing License Code of conduct Citation Roadmap

openSNP

Note: We have decided to shut down openSNP. Read about the reasons here.

Hello! openSNP.org is a repository to which users can upload their SNP-sets (and exome-VCFs) from 23andme, deCODEme, FamilyTreeDNA, AncestryDNA and IYG-format (for participants of EBI genotyping). On upload, SNPs are annotated using the PLoS and Mendeley-APIs to show users the newest scientific research results on their SNPs. Each SNP is also linked to the relevant page on SNPedia. SNPs are ranked according to how many results could be gathered for SNPedia, PLoS and Mendeley (in that order). Users can send each other private messages as well as comment on SNPs and Phenotypes.

Installing openSNP

Please see INSTALL.md for more detailed instructions on how to run and setup openSNP.

Contributing to openSNP

Thanks for your interest in helping us out! You are awesome! Please see CONTRIBUTING.md for more detailed instructions on how to contribute. We also have a ROADMAP.md, containing our idea of where the project should head.

The project has a Code of Conduct in order to make this a safe and inclusive space for everyone.

Thanks go to everyone who has contributed so far. May you be celebrated, inside our humans.txt and outside of it!

Getting in contact

You can always open an issue for specific problems, or send a mail to snpr-development@googlegroups.com if you want to discuss something or if you have any questions or need help with something. There's also info@opensnp.org if something broke on the site itself.

We're also available on Twitter:

@gedankenstuecke @helgerausch @philippbayer

You can also join us on Gitter.

Owner

Name: openSNP
Login: openSNP
Kind: organization
Email: info@opensnp.org

Website: https://opensnp.org
Repositories: 10
Profile: https://github.com/openSNP

Putting Genetic Data into the Public Domain

Citation (CITATION.md)

# openSNP: The paper! 

Our work with *openSNP* [has been published in *PLOS ONE* in 2014](http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0089204). If you are re-using code or use data from *openSNP* it would be great if you could cite the paper, so we also see where people are putting the project to good use. 

If you're using *bibtex* you can use the following code: 

```
@article{greshake2014opensnp,
title={OpenSNP-a crowdsourced web resource for personal genomics},
author={Greshake, Bastian and Bayer, Philipp E and Rausch, Helge and Reda, Julia},
journal={PLOS ONE},
volume={9},
number={3},
pages={e89204},
year={2014},
doi={10.1371/journal.pone.0089204}
url={http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0089204}
publisher={Public Library of Science}
}
```

GitHub Events

Total

Watch event: 4
Delete event: 3
Push event: 6
Pull request review event: 1
Pull request event: 4
Fork event: 10
Create event: 3

Last Year

Watch event: 4
Delete event: 3
Push event: 6
Pull request review event: 1
Pull request event: 4
Fork event: 10
Create event: 3

Committers

Last synced: almost 3 years ago

All Time

Total Commits: 1,828
Total Committers: 22
Avg Commits per committer: 83.091
Development Distribution Score (DDS): 0.728

Top Committers

Name	Email	Commits
Bastian Greshake	b**e@g**m	497
Philipp Bayer	P**y@g**m	484
Helge Rausch	h**e@r**o	432
Philipp Bayer	p**y@g**m	358
dependabot[bot]	4**]@u**m	12
Austin Richardson	h**a@g**m	9
Calvyn82	c**r@g**m	8
djab	b**u@g**m	5
Philipp Bayer	d**s@l**n	4
Vivek Rai	v**p@g**m	4
SXibolet	g**2@i**u	3
amiefairs	a**s@g**m	2
Abigail Cabunoc Mayes	a**c@g**m	1
7yl4r	m**r@g**m	1
Andrew Riha	a**a@g**m	1
Stephanie Smith-Unna	s**a@g**m	1
Katrin Leinweber	9**r@u**m	1
Bastian Greshake	g**e@p**x	1
The Gitter Badger	b**r@g**m	1
brent verpaalen	b**5@h**m	1
alphaCTzo7G	d**p@g**m	1
Andrea Bedini	a**i@u**m	1

Committer Domains (Top 20 + Academic)

gitter.im: 1 phix174.fritz.box: 1 illinois.edu: 1 localhost.localdomain: 1 rausch.io: 1

Dependencies

Gemfile rubygems

capistrano ~> 2.0 development
capybara >= 0 development
database_cleaner >= 0 development
factory_bot_rails >= 0 development
guard-rspec >= 0 development
launchy >= 0 development
minitest >= 0 development
mocha >= 0 development
poltergeist >= 0 development
rspec-rails >= 0 development
rvm-capistrano = 1.4.4 development
shoulda-context >= 0 development
simplecov >= 0 development
spring >= 0 development
spring-commands-rspec >= 0 development
test-unit >= 0 development
timecop >= 0 development
uuidtools >= 0 development
vcr >= 0 development
webmock >= 0 development
activerecord-import >= 0.4.0
attr_encrypted >= 0
authlogic >= 0
bcrypt-ruby >= 0
composite_primary_keys ~> 8.0
dotenv-rails >= 0
dynamic_form >= 0
execjs >= 0
friendly_id >= 0
i18n >= 0.6.6
jquery-rails >= 0
jquery-ui-rails ~> 4.2.1
json >= 0
lograge >= 0
mediawiki-gateway >= 0
mendeley >= 0
nested_form >= 0
paperclip >= 0
pg < 1
pg_search >= 0
plos >= 0
rails ~> 4.2
rails3-generators >= 0
recaptcha >= 0
recommendify >= 0
rubyzip >= 0
sanitize >= 0
sass-rails >= 0
sentry-raven >= 0
sidekiq >= 0
sidekiq-limit_fetch >= 0
sinatra >= 0
slim ~> 1.3.8
slop >= 0
therubyracer >= 0
uglifier >= 0
whenever >= 0
will_paginate >= 0
will_paginate-bootstrap >= 0

Gemfile.lock rubygems

160 dependencies

.github/workflows/build.yml actions

actions/checkout v2 composite
ruby/setup-ruby v1 composite
postgres 9.5 docker
redis * docker

ecosyste.ms

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