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Recent Releases of baselinenowcast

baselinenowcast - Function name and argument updates

What's Changed

  • Hot fix: run CI on PRs to all branches not just main by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/212
  • Issue 167: Move to action oriented function naming by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/204
  • Issue 196: Align maths in package with supplement by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/209
  • Issue 143: change argument names by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/205
  • Hot fix vignette by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/215
  • Hot fix: using wrong arg for estimate uncertainty by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/221
  • Issue 217: Fix the check for the number of horizons in the estimate_uncertainty() function by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/220
  • Update codemeta.json by @github-actions[bot] in https://github.com/epinowcast/baselinenowcast/pull/226
  • Issue 222: upload fixed vignette and delete separate build action by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/224
  • Issue 218: fix truncate triangles default by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/225

Full Changelog: https://github.com/epinowcast/baselinenowcast/compare/v0.1.1-beta...v0.1.2-beta

- R
Published by kaitejohnson 7 months ago

baselinenowcast - v0.1.1-beta

What's Changed

  • Add skeleton from primary censored by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/1
  • Update codemeta.json by @github-actions[bot] in https://github.com/epinowcast/baselinenowcast/pull/7
  • 8: add allcontributors to render readme action by @sbfnk in https://github.com/epinowcast/baselinenowcast/pull/9
  • Update README by @github-actions[bot] in https://github.com/epinowcast/baselinenowcast/pull/10
  • Update README by @github-actions[bot] in https://github.com/epinowcast/baselinenowcast/pull/11
  • Issue #4: Setup vignette by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/5
  • Update codemeta.json by @github-actions[bot] in https://github.com/epinowcast/baselinenowcast/pull/13
  • Issue 21: fix typo in theme, add nav bar structure by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/22
  • Update codemeta.json by @github-actions[bot] in https://github.com/epinowcast/baselinenowcast/pull/27
  • Issue 24: update to 4.1.0 by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/28
  • Update codemeta.json by @github-actions[bot] in https://github.com/epinowcast/baselinenowcast/pull/29
  • Hot fix: change KJ to reviewer for codemeta by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/30
  • Issue 14: Add function to generate point nowcast from delay by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/15
  • Update codemeta.json by @github-actions[bot] in https://github.com/epinowcast/baselinenowcast/pull/31
  • Issue 16: Estimate uncertainty by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/18
  • Update codemeta.json by @github-actions[bot] in https://github.com/epinowcast/baselinenowcast/pull/36
  • Hot fix: fix left nav bar by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/32
  • Issue 26: add job to post website as a PR comment by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/34
  • Issue 35: Draft of methods by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/37
  • Update spelling.R by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/42
  • Issue 43: Write function to generate retrospective data from reporting triangle by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/44
  • Issue 49: write function to estimate dispersion parameters by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/50
  • Issue 53: write add_obs_errors_to_nowcast function by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/54
  • Issue 51: Add observation error to a point nowcast by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/52
  • Issue 57: add full stops everywhere by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/61
  • Update README by @github-actions[bot] in https://github.com/epinowcast/baselinenowcast/pull/64
  • Issue 59: implement zero handling method for iteratively applying the delay by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/60
  • Issue 55: generate_prob_nowcast_df() by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/56
  • Update codemeta.json by @github-actions[bot] in https://github.com/epinowcast/baselinenowcast/pull/72
  • Issue 66: enable estimate of delay from complete or partial reporting triangle by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/67
  • Update codemeta.json by @github-actions[bot] in https://github.com/epinowcast/baselinenowcast/pull/73
  • Issue 62: write function to summarise by reference time by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/63
  • Hot fix: don't assume R adds a V to column names by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/77
  • Issue 46: refactor model definition by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/69
  • Update README by @github-actions[bot] in https://github.com/epinowcast/baselinenowcast/pull/78
  • Update codemeta.json by @github-actions[bot] in https://github.com/epinowcast/baselinenowcast/pull/79
  • Issue 75: Fix bug where last row is Inf by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/76
  • Issue 75 follow-up: fix error message suggestion by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/88
  • Issue 74: standardise naming by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/84
  • Issue 93: ragged reporting support by @seabbs in https://github.com/epinowcast/baselinenowcast/pull/99
  • Update README by @github-actions[bot] in https://github.com/epinowcast/baselinenowcast/pull/116
  • Update codemeta.json by @github-actions[bot] in https://github.com/epinowcast/baselinenowcast/pull/117
  • Update README by @github-actions[bot] in https://github.com/epinowcast/baselinenowcast/pull/118
  • Fix: Rendering of math and referencing of image by @TimTaylor in https://github.com/epinowcast/baselinenowcast/pull/87
  • Don't mandate that elements of triangle are integers by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/122
  • Issue 103: Implement dispersion by horizon applied to aggregate nowcasts by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/104
  • Fix generate_pt_nowcast_mat/_list by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/119
  • Issue 109: nomenclature adjustment by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/123
  • Suggested DESCRIPTION tweaks by @seabbs in https://github.com/epinowcast/baselinenowcast/pull/127
  • Issue 120: Improve description and update readme by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/126
  • Update README by @github-actions[bot] in https://github.com/epinowcast/baselinenowcast/pull/128
  • Update codemeta.json by @github-actions[bot] in https://github.com/epinowcast/baselinenowcast/pull/129
  • Issue 108: depreciate replace lower right w NA by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/130
  • Issue 132: fix caption by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/135
  • Hot fix: Move from error to warning in estimate_dispersion() by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/137
  • Issue 133: Use defaults in vignette by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/136
  • Refine tools for draws and usage in vignette by @seabbs in https://github.com/epinowcast/baselinenowcast/pull/142
  • Issue #112: Add support for ragged triangles to esimate dispersion by @seabbs in https://github.com/epinowcast/baselinenowcast/pull/140
  • Update codemeta.json by @github-actions[bot] in https://github.com/epinowcast/baselinenowcast/pull/149
  • Issue 114: add safe iterator for generate pt nowcast matrix list by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/124
  • Issue #147: Make badge experimental and drop (in development) from title by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/150
  • Update README by @github-actions[bot] in https://github.com/epinowcast/baselinenowcast/pull/152
  • Update README by @github-actions[bot] in https://github.com/epinowcast/baselinenowcast/pull/151
  • Issue 138: Tighten language around data usage by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/141
  • Issue 107: add support for passing in (a restricted set) of functions for dispersion estimate by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/131
  • Issue #145: Fix bug in apply_delay() for structure = 2 ragged triangles by @seabbs in https://github.com/epinowcast/baselinenowcast/pull/155
  • Update codemeta.json by @github-actions[bot] in https://github.com/epinowcast/baselinenowcast/pull/156
  • Issue 157: enable observations to be aggregated by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/158
  • Hot fix: right alignment by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/160
  • Issue #159: Fix bugs in dispersion estimate by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/161
  • Issue 162: add a test for returning the dispersion parameters by horizon by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/163
  • Update README by @github-actions[bot] in https://github.com/epinowcast/baselinenowcast/pull/165
  • Issue # 164: distinguish between the delays in delay pmf by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/166
  • Issue 173: Structure requirements are too strict by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/174
  • Issue 176: Change requirements on number of rows in generate_pt_nowcast_mat() by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/177
  • Hot fix: get_delay_estimate() needs warnings if trying to estimate without a complete row by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/178
  • Issue 101: move nomenclature table and abbreviations to separate vignette by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/189
  • Issue 180: add tests and checks for proper ensuring not all 0s on LHS by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/181
  • Issue 191: add a test to make sure the first NA in the last row is not at index 1 by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/192
  • Issue 33 - Hex logo by @jamesmbaazam in https://github.com/epinowcast/baselinenowcast/pull/168
  • Issue 194: fix logo by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/195
  • Update README by @github-actions[bot] in https://github.com/epinowcast/baselinenowcast/pull/198
  • Issue 185: clean up vignette, literate code, remove some text and point to docs by @kaitejohnson in https://github.com/epinowcast/baselinenowcast/pull/190
  • Update baselinenowcast vignette by @github-actions[bot] in https://github.com/epinowcast/baselinenowcast/pull/202

New Contributors

  • @kaitejohnson made their first contribution in https://github.com/epinowcast/baselinenowcast/pull/1
  • @github-actions[bot] made their first contribution in https://github.com/epinowcast/baselinenowcast/pull/7
  • @sbfnk made their first contribution in https://github.com/epinowcast/baselinenowcast/pull/9
  • @seabbs made their first contribution in https://github.com/epinowcast/baselinenowcast/pull/99
  • @TimTaylor made their first contribution in https://github.com/epinowcast/baselinenowcast/pull/87
  • @jamesmbaazam made their first contribution in https://github.com/epinowcast/baselinenowcast/pull/168

Full Changelog: https://github.com/epinowcast/baselinenowcast/commits/v0.1.1-beta

- R
Published by kaitejohnson 7 months ago